/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package test; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.util.ArrayList; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.callbacks.H5O_iterate_cb; import hdf.hdf5lib.callbacks.H5O_iterate_t; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5O_info_t; import org.junit.After; import org.junit.Before; import org.junit.Rule; import org.junit.Test; import org.junit.rules.TestName; public class TestH5Obasic { @Rule public TestName testname = new TestName(); private static final String H5_FILE = "h5ex_g_iterate.hdf"; private static long H5la_ds1 = -1; private static long H5la_l1 = -1; private static long H5la_dt1 = -1; private static long H5la_g1 = -1; long H5fid = -1; @Before public void openH5file() throws HDF5LibraryException, NullPointerException { assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); System.out.print(testname.getMethodName()); try { H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Fopen: openH5file: " + err); } } @After public void closeH5file() throws HDF5LibraryException { if (H5fid > 0) { try {H5.H5Fclose(H5fid);} catch (Exception ex) {} } System.out.println(); } @Test(expected = HDF5LibraryException.class) public void testH5Oopen_not_exists() throws Throwable { long oid = -1; oid = H5.H5Oopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT); try {H5.H5Oclose(oid);} catch (Exception ex) {} } @Test public void testH5Oget_info_dataset() { long oid = -1; H5O_info_t obj_info = null; try { oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } assertFalse("H5Oget_info ",obj_info==null); assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); try {H5.H5Oclose(oid);} catch (Exception ex) {} } @Test public void testH5Oget_info_hardlink() { long oid = -1; H5O_info_t obj_info = null; try { oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } assertFalse("H5Oget_info ",obj_info==null); assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); try {H5.H5Oclose(oid);} catch (Exception ex) {} } @Test public void testH5Oget_info_group() { long oid = -1; H5O_info_t obj_info = null; try { oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } assertFalse("H5Oget_info ",obj_info==null); assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_GROUP); try {H5.H5Oclose(oid);} catch (Exception ex) {} } @Test public void testH5Oget_info_datatype() { long oid = -1; H5O_info_t obj_info = null; try { oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } assertFalse("H5Oget_info ",obj_info==null); assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE); try {H5.H5Oclose(oid);} catch (Exception ex) {} } @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_by_name_not_exist_name() throws Throwable { H5.H5Oget_info_by_name(H5fid, "None", HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_by_name_not_exists() throws Throwable { H5.H5Oget_info_by_name(H5fid, "Bogus", HDF5Constants.H5P_DEFAULT); } @Test public void testH5Oget_info_by_name_dataset() { H5O_info_t obj_info = null; try { obj_info = H5.H5Oget_info_by_name(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } assertFalse("H5Oget_info ",obj_info==null); assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); } @Test public void testH5Oget_info_by_name_hardlink() { H5O_info_t obj_info = null; try { obj_info = H5.H5Oget_info_by_name(H5fid, "L1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } assertFalse("H5Oget_info ",obj_info==null); assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); } @Test public void testH5Oget_info_by_name_group() { H5O_info_t obj_info = null; try { obj_info = H5.H5Oget_info_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } assertFalse("H5Oget_info ",obj_info==null); assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_GROUP); } @Test public void testH5Oget_info_by_name_datatype() { H5O_info_t obj_info = null; try { obj_info = H5.H5Oget_info_by_name(H5fid, "DT1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oget_info: " + err); } assertFalse("H5Oget_info ",obj_info==null); assertTrue("H5Oget_info object type",obj_info.type==HDF5Constants.H5O_TYPE_NAMED_DATATYPE); } @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_by_idx_name_not_exist_name() throws Throwable { H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_by_idx_name_not_exist_create() throws Throwable { H5.H5Oget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_by_idx_not_exist_name() throws Throwable { H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Oget_info_by_idx_not_exist_create() throws Throwable { H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); } @Test public void testH5Oget_info_by_idx_n0() { long oid = -1; H5O_info_t obj_info = null; try { oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oget_info_by_idx_n0:H5.H5Oget_info: " + err); } H5la_ds1 = obj_info.addr; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oget_info_by_idx_n0:H5.H5Oget_info_by_idx: " + err); } assertFalse("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx ",obj_info==null); assertTrue("testH5Oget_info_by_idx_n0:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oget_info_by_idx_n0:Link Address ",obj_info.addr==H5la_ds1); } @Test public void testH5Oget_info_by_idx_n3() { long oid = -1; H5O_info_t obj_info = null; try { oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oget_info_by_idx_n3:H5.H5Oget_info: " + err); } H5la_l1 = obj_info.addr; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { obj_info = H5.H5Oget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oget_info_by_idx_n3:H5.H5Oget_info_by_idx: " + err); } assertFalse("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx ",obj_info==null); assertTrue("testH5Oget_info_by_idx_n3:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oget_info_by_idx_n3:Link Address ",obj_info.addr==H5la_l1); } @Test public void testH5Ovisit() { class idata { public String link_name = null; public int link_type = -1; idata(String name, int type) { this.link_name = name; this.link_type = type; } } class H5O_iter_data implements H5O_iterate_t { public ArrayList iterdata = new ArrayList(); } H5O_iterate_t iter_data = new H5O_iter_data(); class H5O_iter_callback implements H5O_iterate_cb { public int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data) { idata id = new idata(name, info.type); ((H5O_iter_data)op_data).iterdata.add(id); return 0; } } H5O_iterate_cb iter_cb = new H5O_iter_callback(); try { H5.H5Ovisit(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Ovisit: " + err); } assertFalse("H5Ovisit ",((H5O_iter_data)iter_data).iterdata.isEmpty()); assertTrue("H5Ovisit "+((H5O_iter_data)iter_data).iterdata.size(),((H5O_iter_data)iter_data).iterdata.size()==5); assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(0)).link_name,(((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".")==0); assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(1)).link_name,(((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS1")==0); assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(2)).link_name,(((H5O_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("DT1")==0); assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(3)).link_name,(((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1")==0); assertTrue("H5Ovisit "+(((H5O_iter_data)iter_data).iterdata.get(4)).link_name,(((H5O_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("G1/DS2")==0); // assertTrue("H5Ovisit "+((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name,((idata)((H5O_iter_data)iter_data).iterdata.get(5)).link_name.compareToIgnoreCase("L1")==0); } @Test public void testH5Ovisit_by_name() { class idata { public String link_name = null; public int link_type = -1; idata(String name, int type) { this.link_name = name; this.link_type = type; } } class H5O_iter_data implements H5O_iterate_t { public ArrayList iterdata = new ArrayList(); } H5O_iterate_t iter_data = new H5O_iter_data(); class H5O_iter_callback implements H5O_iterate_cb { public int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data) { idata id = new idata(name, info.type); ((H5O_iter_data)op_data).iterdata.add(id); return 0; } } H5O_iterate_cb iter_cb = new H5O_iter_callback(); try { H5.H5Ovisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Ovisit_by_name: " + err); } assertFalse("H5Ovisit_by_name ",((H5O_iter_data)iter_data).iterdata.isEmpty()); assertTrue("H5Ovisit_by_name "+((H5O_iter_data)iter_data).iterdata.size(),((H5O_iter_data)iter_data).iterdata.size()==2); assertTrue("H5Ovisit_by_name "+(((H5O_iter_data)iter_data).iterdata.get(0)).link_name,(((H5O_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase(".")==0); assertTrue("H5Ovisit_by_name "+(((H5O_iter_data)iter_data).iterdata.get(1)).link_name,(((H5O_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DS2")==0); } @Test public void testH5Oexists_by_name() { boolean name_exists = false; try { name_exists = H5.H5Oexists_by_name(H5fid, "G1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Oexists_by_name: " + err); } assertTrue("H5Oexists_by_name ", name_exists); //TODO get dangling link result } @Test public void testH5Oopen_by_addr() { long oid = -1; H5O_info_t obj_info = null; try { try { oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_addr: H5.H5Oget_info: " + err); } H5la_ds1 = obj_info.addr; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { oid = H5.H5Oopen_by_addr(H5fid, H5la_ds1); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_addr: H5.H5Oopen_by_addr: " + err); } try { obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_addr: H5.H5Oget_info: " + err); } assertFalse("testH5Oopen_by_addr: H5Oget_info ",obj_info==null); assertTrue("testH5Oopen_by_addr: H5Oget_info link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oopen_by_addr: Link Address ",obj_info.addr==H5la_ds1); } finally { try{H5.H5Oclose(oid);} catch (Exception ex) {} } } @Test public void testH5Oopen_by_idx_n0() { long oid = -1; H5O_info_t obj_info = null; try { try { oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_idx_n0: H5.H5Oget_info: " + err); } H5la_ds1 = obj_info.addr; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_addr: H5.H5Oopen_by_addr: " + err); } try { obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_idx_n0: H5.H5Oget_info_by_idx: " + err); } assertFalse("testH5Oopen_by_idx_n0: H5Oget_info_by_idx ",obj_info==null); assertTrue("testH5Oopen_by_idx_n0: H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oopen_by_idx_n0: Link Address ",obj_info.addr==H5la_ds1); } finally { try{H5.H5Oclose(oid);} catch (Exception ex) {} } } @Test public void testH5Oopen_by_idx_n3() { long oid = -1; H5O_info_t obj_info = null; try { try { oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT); obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_idx_n3:H5.H5Oget_info: " + err); } H5la_l1 = obj_info.addr; try {H5.H5Oclose(oid);} catch (Exception ex) {} try { oid = H5.H5Oopen_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_addr: H5.H5Oopen_by_addr: " + err); } try { obj_info = H5.H5Oget_info(oid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Oopen_by_idx_n3:H5.H5Oget_info_by_idx: " + err); } assertFalse("testH5Oopen_by_idx_n3:H5Oget_info_by_idx ",obj_info==null); assertTrue("testH5Oopen_by_idx_n3:H5Oget_info_by_idx link type",obj_info.type==HDF5Constants.H5O_TYPE_DATASET); assertTrue("testH5Oopen_by_idx_n3:Link Address ",obj_info.addr==H5la_l1); } finally { try{H5.H5Oclose(oid);} catch (Exception ex) {} } } }