/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package test; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import java.text.DecimalFormat; import java.text.NumberFormat; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.exceptions.HDF5PropertyListInterfaceException; import hdf.hdf5lib.structs.H5AC_cache_config_t; import org.junit.After; import org.junit.Before; import org.junit.Rule; import org.junit.Test; import org.junit.rules.TestName; public class TestH5Pfapl { @Rule public TestName testname = new TestName(); private static final String H5_FILE = "testPf.h5"; private static final String H5_LOG_FILE = "testPf.log"; private static final String H5_FAMILY_FILE = "testPf%05d"; private static final String H5_MULTI_FILE = "testPfmulti"; private static char MULTI_LETTERS[] = {'X','s','b','r','g','l','o'}; private static final int DIM_X = 4; private static final int DIM_Y = 6; private static final int DIMF_X = 12; private static final int DIMF_Y = 18; long H5fid = HDF5Constants.H5I_INVALID_HID; long H5dsid = HDF5Constants.H5I_INVALID_HID; long H5did = HDF5Constants.H5I_INVALID_HID; long H5Fdsid = HDF5Constants.H5I_INVALID_HID; long H5Fdid = HDF5Constants.H5I_INVALID_HID; long[] H5dims = { DIM_X, DIM_Y }; long fapl_id = HDF5Constants.H5I_INVALID_HID; long plapl_id = HDF5Constants.H5I_INVALID_HID; long dapl_id = HDF5Constants.H5I_INVALID_HID; long plist_id = HDF5Constants.H5I_INVALID_HID; long btplist_id = HDF5Constants.H5I_INVALID_HID; long[] H5Fdims = { DIMF_X, DIMF_Y }; double windchillF[][] = {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0}, {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, -41.0, -47.0, -53.0, -59.0, -66.0, -72.0}, {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, -45.0, -51.0, -58.0, -64.0, -71.0, -77.0}, {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, -48.0, -55.0, -61.0, -68.0, -74.0, -81.0}, {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, -51.0, -58.0, -64.0, -71.0, -78.0, -84.0}, {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, -53.0, -60.0, -67.0, -73.0, -80.0, -87.0}, {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, -55.0, -62.0, -69.0, -76.0, -82.0, -89.0}, {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, -57.0, -64.0, -71.0, -78.0, -84.0, -91.0}, {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, -58.0, -65.0, -72.0, -79.0, -86.0, -93.0}, {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, -60.0, -67.0, -74.0, -81.0, -88.0, -95.0}, {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, -61.0, -68.0, -75.0, -82.0, -89.0, -97.0}, {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, -62.0, -69.0, -76.0, -84.0, -91.0, -98.0} }; private final void _deleteFile(String filename) { File file = null; try { file = new File(filename); } catch (Throwable err) {} if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } } private final void _deleteLogFile() { File file = null; try { file = new File(H5_LOG_FILE); } catch (Throwable err) {} if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } } private final void _deleteFamilyFile() { File file = null; for(int indx = 0; ;indx++) { java.text.DecimalFormat myFormat = new java.text.DecimalFormat("00000"); try { file = new File("test"+myFormat.format(Integer.valueOf(indx))+".h5"); } catch (Throwable err) {} if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } else return; } } private final void _deleteMultiFile() { File file = null; for(int indx = 1;indx<7;indx++) { try { file = new File(H5_MULTI_FILE+"-"+MULTI_LETTERS[indx]+".h5"); } catch (Throwable err) {} if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } } } private final long _createDataset(long fid, long dsid, String name, long dapl) { long did = HDF5Constants.H5I_INVALID_HID; try { did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } assertTrue("TestH5Pfapl._createDataset: ", did > 0); return did; } private final void _createFloatDataset() { try { H5Fdsid = H5.H5Screate_simple(2, H5Fdims, null); H5Fdid = H5.H5Dcreate(H5fid, "dsfloat", HDF5Constants.H5T_NATIVE_FLOAT, H5Fdsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } assertTrue("TestH5Pfapl._createFloatDataset: ", H5Fdid > 0); try { H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } catch (Throwable err) { err.printStackTrace(); } } private final void _createH5multiFileDS() { try { H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Pfapl.createH5file: " + err); } assertTrue("TestH5Pfapl.createH5file: _createDataset: ", H5did > 0); try { H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } catch (Throwable err) { err.printStackTrace(); } } private final void _createH5File(long fapl) { try { H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl); H5dsid = H5.H5Screate_simple(2, H5dims, null); H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Pfapl.createH5file: " + err); } assertTrue("TestH5Pfapl.createH5file: H5.H5Fcreate: ", H5fid > 0); assertTrue("TestH5Pfapl.createH5file: H5.H5Screate_simple: ", H5dsid > 0); assertTrue("TestH5Pfapl.createH5file: _createDataset: ", H5did > 0); try { H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } catch (Throwable err) { err.printStackTrace(); } } private final void _createH5familyFile(long fapl) { try { H5fid = H5.H5Fcreate(H5_FAMILY_FILE+".h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl); H5dsid = H5.H5Screate_simple(2, H5dims, null); H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Pfapl.createH5file: " + err); } assertTrue("TestH5Pfapl.createH5file: H5.H5Fcreate: ", H5fid > 0); assertTrue("TestH5Pfapl.createH5file: H5.H5Screate_simple: ", H5dsid > 0); assertTrue("TestH5Pfapl.createH5file: _createDataset: ", H5did > 0); try { H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } catch (Throwable err) { err.printStackTrace(); } } private final void _createH5multiFile(long fapl) { try { H5fid = H5.H5Fcreate(H5_MULTI_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl); H5dsid = H5.H5Screate_simple(2, H5dims, null); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Pfapl.createH5file: " + err); } assertTrue("TestH5Pfapl.createH5file: H5.H5Fcreate: ", H5fid > 0); assertTrue("TestH5Pfapl.createH5file: H5.H5Screate_simple: ", H5dsid > 0); try { H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } catch (Throwable err) { err.printStackTrace(); } } public void deleteH5file() { _deleteFile(H5_FILE); } public void deleteH5familyfile() { _deleteFamilyFile(); } public void deleteH5multifile() { _deleteMultiFile(); } @Before public void createFileAccess() throws NullPointerException, HDF5Exception { assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); System.out.print(testname.getMethodName()); try { fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Pfapl.createFileAccess: " + err); } assertTrue(fapl_id > 0); try { plapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Pfapl.createFileAccess: " + err); } assertTrue(plapl_id > 0); try { plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); btplist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Pfapl.createFileAccess: " + err); } assertTrue(plist_id > 0); assertTrue(btplist_id > 0); assertTrue(dapl_id > 0); } @After public void deleteFileAccess() throws HDF5LibraryException { if (fapl_id > 0) try {H5.H5Pclose(fapl_id);} catch (Exception ex) {} if (plapl_id > 0) try {H5.H5Pclose(plapl_id);} catch (Exception ex) {} if (dapl_id > 0) try {H5.H5Pclose(dapl_id);} catch (Exception ex) {} if (plist_id > 0) try {H5.H5Pclose(plist_id);} catch (Exception ex) {} if (btplist_id > 0) try {H5.H5Pclose(btplist_id);} catch (Exception ex) {} if (H5Fdsid > 0) try {H5.H5Sclose(H5Fdsid);} catch (Exception ex) {} if (H5Fdid > 0) try {H5.H5Dclose(H5Fdid);} catch (Exception ex) {} if (H5dsid > 0) try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} if (H5did > 0) try {H5.H5Dclose(H5did);} catch (Exception ex) {} if (H5fid > 0) try {H5.H5Fclose(H5fid);} catch (Exception ex) {} System.out.println(); } @Test public void testH5Pget_libver_bounds() { int ret_val = -1; int[] libver = new int[2]; try { ret_val = H5.H5Pget_libver_bounds(fapl_id, libver); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_libver_bounds: " + err); } assertTrue("testH5Pget_libver_bounds", ret_val >= 0); // Check the Earliest Version if the library assertEquals(HDF5Constants.H5F_LIBVER_EARLIEST, libver[0]); // Check the Latest Version if the library assertEquals(HDF5Constants.H5F_LIBVER_LATEST, libver[1]); } @Test public void testH5Pset_libver_bounds() { int ret_val = -1; int low = HDF5Constants.H5F_LIBVER_EARLIEST; int high = HDF5Constants.H5F_LIBVER_LATEST; int[] libver = new int[2]; try { ret_val = H5.H5Pset_libver_bounds(fapl_id, low, high); H5.H5Pget_libver_bounds(fapl_id, libver); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_libver_bounds: " + err); } assertTrue("testH5Pset_libver_bounds", ret_val >= 0); // Check the Earliest Version if the library assertEquals(HDF5Constants.H5F_LIBVER_EARLIEST, libver[0]); // Check the Latest Version if the library assertEquals(HDF5Constants.H5F_LIBVER_LATEST, libver[1]); } @Test(expected = HDF5LibraryException.class) public void testH5Pset_elink_fapl_NegativeID() throws Throwable { H5.H5Pset_elink_fapl(-1, fapl_id ); } @Test public void testH5Pset_elink_fapl() { int ret_val = -1; try { ret_val = H5.H5Pset_elink_fapl(plapl_id, fapl_id ); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_elink_fapl: " + err); } assertTrue("H5Pset_elink_fapl", ret_val >= 0); } @Test public void testH5Pget_elink_fapl() { long ret_val_id = HDF5Constants.H5I_INVALID_HID; try { ret_val_id = H5.H5Pget_elink_fapl(plapl_id); assertTrue("H5Pget_elink_fapl", ret_val_id >= 0); assertEquals(HDF5Constants.H5P_DEFAULT, ret_val_id ); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_elink_fapl: " + err); } finally { if (ret_val_id > 0) try {H5.H5Pclose(ret_val_id);} catch (Exception ex) {} } } @Test public void testH5P_elink_fapl() { long ret_val_id = HDF5Constants.H5I_INVALID_HID; try { H5.H5Pset_elink_fapl(plapl_id, fapl_id ); ret_val_id = H5.H5Pget_elink_fapl(plapl_id); assertTrue("H5P_elink_fapl", ret_val_id >= 0); } catch (Throwable err) { err.printStackTrace(); fail("H5P_elink_fapl: " + err); } finally { if (ret_val_id > 0) try {H5.H5Pclose(ret_val_id);} catch (Exception ex) {} } } @Test public void testH5P_elink_file_cache_size() { long elink_fapl_id = HDF5Constants.H5I_INVALID_HID; int efc_size = 0; try { H5.H5Pset_elink_fapl(plapl_id, fapl_id ); elink_fapl_id = H5.H5Pget_elink_fapl(plapl_id); assertTrue("H5P_elink_file_cache_size", elink_fapl_id >= 0); try { efc_size = H5.H5Pget_elink_file_cache_size(elink_fapl_id); assertTrue("H5P_elink_file_cache_size default", efc_size == 0); } catch (UnsupportedOperationException err) { System.out.println(err.getMessage()); } try { efc_size = 8; H5.H5Pset_elink_file_cache_size(elink_fapl_id, efc_size); efc_size = H5.H5Pget_elink_file_cache_size(elink_fapl_id); assertTrue("H5P_elink_file_cache_size 8", efc_size == 8); } catch (UnsupportedOperationException err) { System.out.println(err.getMessage()); } } catch (Throwable err) { err.printStackTrace(); fail("H5P_elink_file_cache_size: " + err); } finally { if (elink_fapl_id > 0) try {H5.H5Pclose(elink_fapl_id);} catch (Exception ex) {} } } @Test public void testH5P_btree_ratios() { double[] left = {0.1}; double[] middle = {0.5}; double[] right = {0.7}; try { H5.H5Pset_btree_ratios(plist_id, left[0], middle[0], right[0]); H5.H5Pget_btree_ratios(plist_id, left, middle, right); assertTrue("H5P_btree_ratios", left[0] == 0.1); } catch (Throwable err) { err.printStackTrace(); fail("H5P_btree_ratios: " + err); } } @Test public void testH5P_edc_check() { int ret_val_id = -1; try { ret_val_id = H5.H5Pget_edc_check(plist_id); assertTrue("H5P_edc_check", ret_val_id == HDF5Constants.H5Z_ENABLE_EDC); H5.H5Pset_edc_check(plist_id, HDF5Constants.H5Z_DISABLE_EDC); ret_val_id = H5.H5Pget_edc_check(plist_id); assertTrue("H5P_edc_check", ret_val_id == HDF5Constants.H5Z_DISABLE_EDC); } catch (Throwable err) { err.printStackTrace(); fail("H5P_edc_check: " + err); } } @Test public void testH5P_fclose_degree() { int ret_val_id = -1; try { ret_val_id = H5.H5Pget_fclose_degree(fapl_id); assertTrue("H5Pget_fclose_degree default", ret_val_id == HDF5Constants.H5F_CLOSE_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5P_fclose_degree: default " + err); } try { H5.H5Pset_fclose_degree(fapl_id, HDF5Constants.H5F_CLOSE_STRONG); ret_val_id = H5.H5Pget_fclose_degree(fapl_id); assertTrue("H5Pget_fclose_degree", ret_val_id == HDF5Constants.H5F_CLOSE_STRONG); } catch (Throwable err) { err.printStackTrace(); fail("H5P_fclose_degree: H5F_CLOSE_STRONG " + err); } try { H5.H5Pset_fclose_degree(fapl_id, HDF5Constants.H5F_CLOSE_SEMI); ret_val_id = H5.H5Pget_fclose_degree(fapl_id); assertTrue("H5Pget_fclose_degree", ret_val_id == HDF5Constants.H5F_CLOSE_SEMI); } catch (Throwable err) { err.printStackTrace(); fail("H5P_fclose_degree: H5F_CLOSE_SEMI " + err); } } @Test public void testH5P_alignment() { long[] align = {0,0}; try { H5.H5Pget_alignment(fapl_id, align); assertTrue("H5P_alignment threshold default", align[0] == 1); assertTrue("H5P_alignment alignment default", align[1] == 1); } catch (Throwable err) { err.printStackTrace(); fail("H5P_alignment: default " + err); } try { align[0] = 1024; align[1] = 2048; H5.H5Pset_alignment(fapl_id, align[0], align[1]); H5.H5Pget_alignment(fapl_id, align); assertTrue("H5P_alignment threshold", align[0] == 1024); assertTrue("H5P_alignment alignment", align[1] == 2048); } catch (Throwable err) { err.printStackTrace(); fail("H5P_alignment: " + err); } } @Test public void testH5P_meta_block_size() { long meta_size = 0; try { meta_size = H5.H5Pget_meta_block_size(fapl_id); assertTrue("H5P_meta_block_size default", meta_size == 2048); } catch (Throwable err) { err.printStackTrace(); fail("H5P_meta_block_size: default " + err); } try { meta_size = 4096; H5.H5Pset_meta_block_size(fapl_id, meta_size); meta_size = H5.H5Pget_meta_block_size(fapl_id); assertTrue("H5P_meta_block_size 4096", meta_size == 4096); } catch (Throwable err) { err.printStackTrace(); fail("H5P_meta_block_size: " + err); } } @Test public void testH5P_small_data_block_size() { long align = 0; try { align = H5.H5Pget_small_data_block_size(fapl_id); assertTrue("H5P_small_data_block_size default", align == 2048); } catch (Throwable err) { err.printStackTrace(); fail("H5P_small_data_block_size: default " + err); } try { align = 4096; H5.H5Pset_small_data_block_size(fapl_id, align); align = H5.H5Pget_small_data_block_size(fapl_id); assertTrue("H5P_small_data_block_size 4096", align == 4096); } catch (Throwable err) { err.printStackTrace(); fail("H5P_small_data_block_size: " + err); } } @Test public void testH5P_hyper_vector_size() { long[] align = {0}; try { H5.H5Pget_hyper_vector_size(plist_id, align); assertTrue("H5P_hyper_vector_size default", align[0] == 1024); } catch (Throwable err) { err.printStackTrace(); fail("H5P_hyper_vector_size: default " + err); } try { align[0] = 4096; H5.H5Pset_hyper_vector_size(plist_id, align[0]); H5.H5Pget_hyper_vector_size(plist_id, align); assertTrue("H5P_hyper_vector_size 4096", align[0] == 4096); } catch (Throwable err) { err.printStackTrace(); fail("H5P_hyper_vector_size: " + err); } } @Test public void testH5P_cache() { long[] rdcc_nelmts = {0}; long[] rdcc_nbytes = {0}; double[] rdcc_w0 = {0}; try { H5.H5Pget_cache(fapl_id, null, rdcc_nelmts, rdcc_nbytes, rdcc_w0); assertTrue("H5P_cache default", rdcc_nelmts[0] == 521); assertTrue("H5P_cache default", rdcc_nbytes[0] == (1024*1024)); assertTrue("H5P_cache default", rdcc_w0[0] == 0.75); } catch (Throwable err) { err.printStackTrace(); fail("H5P_cache: default " + err); } try { rdcc_nelmts[0] = 4096; H5.H5Pset_cache(fapl_id, 0, rdcc_nelmts[0], rdcc_nbytes[0], rdcc_w0[0]); H5.H5Pget_cache(fapl_id, null, rdcc_nelmts, rdcc_nbytes, rdcc_w0); assertTrue("H5P_cache 4096", rdcc_nelmts[0] == 4096); } catch (Throwable err) { err.printStackTrace(); fail("H5P_cache: " + err); } } @Test public void testH5P_chunk_cache() { long[] rdcc_nslots = {0}; long[] rdcc_nbytes = {0}; double[] rdcc_w0 = {0}; try { H5.H5Pget_chunk_cache(dapl_id, rdcc_nslots, rdcc_nbytes, rdcc_w0); assertTrue("H5P_chunk_cache default", rdcc_nslots[0] == 521); assertTrue("H5P_chunk_cache default", rdcc_nbytes[0] == (1024*1024)); assertTrue("H5P_chunk_cache default", rdcc_w0[0] == 0.75); } catch (Throwable err) { err.printStackTrace(); fail("H5P_chunk_cache: default " + err); } try { rdcc_nslots[0] = 4096; H5.H5Pset_chunk_cache(dapl_id, rdcc_nslots[0], rdcc_nbytes[0], rdcc_w0[0]); H5.H5Pget_chunk_cache(dapl_id, rdcc_nslots, rdcc_nbytes, rdcc_w0); assertTrue("H5P_chunk_cache 4096", rdcc_nslots[0] == 4096); } catch (Throwable err) { err.printStackTrace(); fail("H5P_chunk_cache: " + err); } } @Test public void testH5P_sieve_buf_size() { long buf_size = 0; try { buf_size = H5.H5Pget_sieve_buf_size(fapl_id); assertTrue("H5P_sieve_buf_size default", buf_size == (64*1024)); } catch (Throwable err) { err.printStackTrace(); fail("H5P_sieve_buf_size: default " + err); } try { buf_size = 4096; H5.H5Pset_sieve_buf_size(fapl_id, buf_size); buf_size = H5.H5Pget_sieve_buf_size(fapl_id); assertTrue("H5P_sieve_buf_size 4096", buf_size == 4096); } catch (Throwable err) { err.printStackTrace(); fail("H5P_sieve_buf_size: " + err); } } @Test public void testH5P_gc_references() { boolean ret_val_id = false; try { H5.H5Pset_gc_references(fapl_id, true); ret_val_id = H5.H5Pget_gc_references(fapl_id); assertTrue("H5P_gc_references", ret_val_id); } catch (Throwable err) { err.printStackTrace(); fail("H5P_gc_references: " + err); } } @Test public void testH5Pget_mdc_config() { H5AC_cache_config_t cache_config = null; try { cache_config = H5.H5Pget_mdc_config(fapl_id); assertTrue("H5Pget_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_mdc_config: " + err); } } @Test public void testH5Pset_mdc_config() { H5AC_cache_config_t cache_config = null; try { cache_config = H5.H5Pget_mdc_config(fapl_id); assertTrue("H5Pset_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_mdc_config: " + err); } try { cache_config.decr_mode = HDF5Constants.H5C_decr_off; H5.H5Pset_mdc_config(fapl_id, cache_config); cache_config = H5.H5Pget_mdc_config(fapl_id); assertTrue("H5Pset_mdc_config", cache_config.version==HDF5Constants.H5AC_CURR_CACHE_CONFIG_VERSION); assertTrue("H5Pset_mdc_config", cache_config.decr_mode==HDF5Constants.H5C_decr_off); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_mdc_config: " + err); } } @Test public void testH5P_fapl_core() { if (HDF5Constants.H5FD_CORE < 0) return; try { H5.H5Pset_fapl_core(fapl_id, 4096, false); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: core = "+ driver_type, HDF5Constants.H5FD_CORE==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_core: " + err); } try { long[] increment = {-1}; boolean[] backingstore = {true}; H5.H5Pget_fapl_core(fapl_id, increment, backingstore); assertTrue("H5Pget_fapl_core: increment="+increment[0], increment[0]==4096); assertTrue("H5Pget_fapl_core: backingstore="+backingstore[0], !backingstore[0]); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_fapl_core: " + err); } } @Test public void testH5P_fapl_family() { if (HDF5Constants.H5FD_FAMILY < 0) return; try { H5.H5Pset_fapl_family(fapl_id, 1024, HDF5Constants.H5P_DEFAULT); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: family = "+ driver_type, HDF5Constants.H5FD_FAMILY==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_family: " + err); } try { long[] member_size = {0}; long[] member_fapl = {-1}; H5.H5Pget_fapl_family(fapl_id, member_size, member_fapl); assertTrue("H5Pget_fapl_family: member_size="+member_size[0], member_size[0]==1024); assertTrue("H5Pget_fapl_family: member_fapl ", H5.H5P_equal(member_fapl[0], HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_fapl_family: " + err); } _createH5familyFile(fapl_id); deleteH5familyfile(); } @Test public void testH5P_family_offset() { if (HDF5Constants.H5FD_FAMILY < 0) return; try { H5.H5Pset_fapl_family(fapl_id, 1024, HDF5Constants.H5P_DEFAULT); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: family = "+ driver_type, HDF5Constants.H5FD_FAMILY==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_family: " + err); } _createH5familyFile(fapl_id); long family_offset = 512; try { H5.H5Pset_family_offset(fapl_id, family_offset); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_fapl_family: " + err); } try { long offset = H5.H5Pget_family_offset(fapl_id); assertTrue("H5Pget_fapl_family: offset="+offset, offset==family_offset); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_fapl_family: " + err); } deleteH5familyfile(); } @Test public void testH5Pset_fapl_sec2() { if (HDF5Constants.H5FD_SEC2 < 0) return; try { H5.H5Pset_fapl_sec2(fapl_id); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: sec2 = "+ driver_type, HDF5Constants.H5FD_SEC2==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_sec2: " + err); } _createH5File(fapl_id); deleteH5file(); } @Test public void testH5Pset_fapl_stdio() { if (HDF5Constants.H5FD_STDIO < 0) return; try { H5.H5Pset_fapl_stdio(fapl_id); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: stdio = "+ driver_type, HDF5Constants.H5FD_STDIO==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_stdio: " + err); } _createH5File(fapl_id); deleteH5file(); } @Test public void testH5Pset_fapl_log() { if (HDF5Constants.H5FD_LOG < 0) return; try { long log_flags = HDF5Constants.H5FD_LOG_LOC_IO; H5.H5Pset_fapl_log(fapl_id, H5_LOG_FILE, log_flags, 1024); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: log = "+ driver_type, HDF5Constants.H5FD_LOG==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_log: " + err); } _createH5File(fapl_id); deleteH5file(); _deleteLogFile(); } @Test public void testH5P_fapl_muti_nulls() { if (HDF5Constants.H5FD_MULTI < 0) return; int[] member_map = null; long[] member_fapl = null; String[] member_name = null; long[] member_addr = null; try { H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: muti = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_muti: " + err); } try { boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr); assertTrue("H5Pget_fapl_muti: relax ", relax); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_fapl_muti: " + err); } _createH5multiFile(fapl_id); deleteH5multifile(); } @Test public void testH5P_fapl_muti_defaults() { if (HDF5Constants.H5FD_MULTI < 0) return; int H5FD_MEM_NTYPES = HDF5Constants.H5FD_MEM_NTYPES; // 7 long sH5FD_MEM_DEFAULT_HADDR = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE; long sH5FD_MEM_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SIZE; long sH5FD_MEM_SUPER_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_SUPER_SIZE; long sH5FD_MEM_BTREE_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_BTREE_SIZE; long sH5FD_MEM_DRAW_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_DRAW_SIZE; long sH5FD_MEM_GHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_GHEAP_SIZE; long sH5FD_MEM_LHEAP_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_LHEAP_SIZE; long sH5FD_MEM_OHDR_HADDR = HDF5Constants.H5FD_MEM_DEFAULT_OHDR_SIZE; int[] member_map = null; long[] member_fapl = null; String[] member_name = null; long[] member_addr = null; try { H5.H5Pset_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr, true); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: muti = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_muti: " + err); } try { member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr); assertTrue("H5Pget_fapl_muti: relax ", relax); assertTrue("H5Pget_fapl_muti: member_map="+member_map[HDF5Constants.H5FD_MEM_DEFAULT], member_map[HDF5Constants.H5FD_MEM_DEFAULT] == HDF5Constants.H5FD_MEM_DEFAULT); assertTrue("H5Pget_fapl_muti: member_fapl ", H5.H5P_equal(member_fapl[HDF5Constants.H5FD_MEM_DEFAULT], HDF5Constants.H5P_FILE_ACCESS_DEFAULT)); assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DEFAULT], member_name[HDF5Constants.H5FD_MEM_DEFAULT].compareTo("%s-X.h5")==0); assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-s.h5")==0); assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_BTREE], member_name[HDF5Constants.H5FD_MEM_BTREE].compareTo("%s-b.h5")==0); assertTrue("H5Pget_fapl_muti: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-r.h5")==0); assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DEFAULT], member_addr[HDF5Constants.H5FD_MEM_DEFAULT] == sH5FD_MEM_HADDR); assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_SUPER], member_addr[HDF5Constants.H5FD_MEM_SUPER] == sH5FD_MEM_SUPER_HADDR); assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_BTREE], member_addr[HDF5Constants.H5FD_MEM_BTREE] == sH5FD_MEM_BTREE_HADDR); assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_DRAW], member_addr[HDF5Constants.H5FD_MEM_DRAW] == sH5FD_MEM_DRAW_HADDR); assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_GHEAP], member_addr[HDF5Constants.H5FD_MEM_GHEAP] == sH5FD_MEM_GHEAP_HADDR); assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_LHEAP], member_addr[HDF5Constants.H5FD_MEM_LHEAP] == sH5FD_MEM_LHEAP_HADDR); assertTrue("H5Pget_fapl_muti: member_addr="+member_addr[HDF5Constants.H5FD_MEM_OHDR], member_addr[HDF5Constants.H5FD_MEM_OHDR] == sH5FD_MEM_OHDR_HADDR); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_fapl_muti: " + err); } _createH5multiFile(fapl_id); _createH5multiFileDS(); deleteH5multifile(); } @Test public void testH5P_fapl_muti() { if (HDF5Constants.H5FD_MULTI < 0) return; long HADDR_DEFAULT_SIZE = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE; int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; for(int mt=HDF5Constants.H5FD_MEM_DEFAULT; mt= HADDR_DEFAULT_SIZE/4 || file_size <= HADDR_DEFAULT_SIZE/2); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_muti:H5Fget_filesize " + err); } _createH5multiFileDS(); deleteH5multifile(); File file = new File(H5_MULTI_FILE+"-super.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } file = new File(H5_MULTI_FILE+"-btree.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } file = new File(H5_MULTI_FILE+"-draw.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } file = new File(H5_MULTI_FILE+"-gheap.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } } @Test public void testH5P_fapl_split() { if (HDF5Constants.H5FD_MULTI < 0) return; try { H5.H5Pset_fapl_split(fapl_id, "-meta.h5", HDF5Constants.H5P_DEFAULT, "-raw.h5", HDF5Constants.H5P_DEFAULT); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: split = "+ driver_type, HDF5Constants.H5FD_MULTI==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_split: " + err); } try { int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; boolean relax = H5.H5Pget_fapl_multi(fapl_id, member_map, member_fapl, member_name, member_addr); assertTrue("H5Pget_fapl_multi: relax ", relax); assertTrue("H5Pget_fapl_multi: member_name="+member_name[HDF5Constants.H5FD_MEM_SUPER], member_name[HDF5Constants.H5FD_MEM_SUPER].compareTo("%s-meta.h5")==0); assertTrue("H5Pget_fapl_multi: member_name="+member_name[HDF5Constants.H5FD_MEM_DRAW], member_name[HDF5Constants.H5FD_MEM_DRAW].compareTo("%s-raw.h5")==0); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_fapl_split: " + err); } _createH5multiFile(fapl_id); deleteH5multifile(); File file = new File(H5_MULTI_FILE+"-meta.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } file = new File(H5_MULTI_FILE+"-raw.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } } @Test public void testH5P_fapl_direct() { if (HDF5Constants.H5FD_DIRECT < 0) return; try { H5.H5Pset_fapl_direct(fapl_id, 1024, 4096, 8*4096); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: direct = "+ driver_type, HDF5Constants.H5FD_DIRECT==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_direct: " + err); } try { long[] params = {-1, -1, -1}; H5.H5Pget_fapl_direct(fapl_id, params); assertTrue("H5Pget_fapl_direct: alignment="+params[0], params[0]==1024); assertTrue("H5Pget_fapl_direct: block_size="+params[1], params[1]==4096); assertTrue("H5Pget_fapl_direct: cbuf_size="+params[2], params[2]==8*4096); } catch (Throwable err) { err.printStackTrace(); fail("H5Pget_fapl_direct: " + err); } _createH5File(fapl_id); deleteH5file(); } @Test public void testH5Pset_fapl_windows() { if (HDF5Constants.H5FD_WINDOWS < 0) return; try { H5.H5Pset_fapl_windows(fapl_id); long driver_type = H5.H5Pget_driver(fapl_id); assertTrue("H5Pget_driver: windows = "+ driver_type, HDF5Constants.H5FD_WINDOWS==driver_type); } catch (Throwable err) { err.printStackTrace(); fail("H5Pset_fapl_windows: " + err); } _createH5File(fapl_id); deleteH5file(); } @Test public void testH5Pmulti_transform() { if (HDF5Constants.H5FD_MULTI < 0) return; String f_to_c = "(5/9.0)*(x-32)"; double windchillFread[][] = new double[DIMF_X][DIMF_Y]; double windchillC; NumberFormat formatter = new DecimalFormat("#0.000"); long HADDRMAX = HDF5Constants.H5FD_DEFAULT_HADDR_SIZE; int[] member_map = new int[HDF5Constants.H5FD_MEM_NTYPES]; long[] member_fapl = new long[HDF5Constants.H5FD_MEM_NTYPES]; String[] member_name = new String[HDF5Constants.H5FD_MEM_NTYPES]; long[] member_addr = new long[HDF5Constants.H5FD_MEM_NTYPES]; try { H5.H5Pset_data_transform(plist_id, f_to_c); H5.H5Pset_btree_ratios(btplist_id, 0.1, 0.5, 0.7); } catch (Throwable err) { err.printStackTrace(); fail("H5Pdata_transform: " + err); } for(int mt=HDF5Constants.H5FD_MEM_DEFAULT; mt= HADDRMAX/4 || file_size <= HADDRMAX/2); _createH5multiFileDS(); _createFloatDataset(); } catch (Throwable err) { err.printStackTrace(); fail("H5Pdata_transform: " + err); } try { H5.H5Dwrite(H5Fdid, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, plist_id, windchillF); H5.H5Dread(H5Fdid, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, windchillFread); } catch (Throwable err) { err.printStackTrace(); fail("H5Pdata_transform: " + err); } for(int row = 0; row < DIMF_X; row++) { for(int col = 0; col < DIMF_Y; col++) { windchillC = (5/9.0)*(windchillF[row][col]-32); String Cstr = formatter.format(windchillC); String Fread = formatter.format(windchillFread[row][col]); assertTrue("H5Pdata_transform: <"+row+","+col+">"+Fread+"="+Cstr, Fread.compareTo(Cstr)==0); } } deleteH5multifile(); File file = new File(H5_MULTI_FILE+"-super.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } file = new File(H5_MULTI_FILE+"-btree.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } file = new File(H5_MULTI_FILE+"-draw.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } file = new File(H5_MULTI_FILE+"-gheap.h5"); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { ;// e.printStackTrace(); } } } @Test public void testH5Fmdc_logging() { boolean[] mdc_logging_status = {false, false}; boolean[] mdc_log_options = {false, false}; try { boolean is_enabled = true; boolean start_on_access = false; H5.H5Pset_mdc_log_options(fapl_id, is_enabled, H5_LOG_FILE, start_on_access); String location = H5.H5Pget_mdc_log_options(fapl_id, mdc_log_options); assertTrue("H5.H5Pget_mdc_log_options: is_enabled", mdc_log_options[0]); assertFalse("H5.H5Pget_mdc_log_options: start_on_access_out", mdc_log_options[1]); H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST, HDF5Constants.H5F_LIBVER_LATEST); } catch (Throwable err) { err.printStackTrace(); fail("mdc_log_option: " + err); } _createH5File(fapl_id); try { H5.H5Fget_mdc_logging_status(H5fid, mdc_logging_status); } catch (Throwable err) { fail("H5.H5Fget_mdc_logging_status: " + err); } assertTrue("initial: is_enabled", mdc_logging_status[0]); assertFalse("initial: is_currently_logging", mdc_logging_status[1]); try { H5.H5Fstart_mdc_logging(H5fid); H5.H5Fget_mdc_logging_status(H5fid, mdc_logging_status); } catch (Throwable err) { fail("start H5.H5Fget_mdc_logging_status: " + err); } assertTrue("start: is_enabled", mdc_logging_status[0]); assertTrue("start: is_currently_logging", mdc_logging_status[1]); try { H5.H5Fstop_mdc_logging(H5fid); H5.H5Fget_mdc_logging_status(H5fid, mdc_logging_status); } catch (Throwable err) { fail("stop H5.H5Fget_mdc_logging_status: " + err); } // assertFalse("stop: is_enabled", mdc_logging_status[0]); assertFalse("stop: is_currently_logging", mdc_logging_status[1]); deleteH5file(); _deleteLogFile(); } @Test public void testH5P_evict_on_close() { boolean ret_val_id = false; try { H5.H5Pset_evict_on_close(fapl_id, true); ret_val_id = H5.H5Pget_evict_on_close(fapl_id); assertTrue("H5P_evict_on_close", ret_val_id); } catch (HDF5PropertyListInterfaceException err) { // parallel is not supported if (err.getMinorErrorNumber() != HDF5Constants.H5E_UNSUPPORTED) { err.printStackTrace(); fail("H5P_evict_on_close: " + err); } } catch (Throwable err) { err.printStackTrace(); fail("H5P_evict_on_close: " + err); } } @Test public void testH5P_file_locking() { boolean use_file_locking = false; boolean ignore_disabled_file_locking = false; try { // false values (usually not the default) H5.H5Pset_file_locking(fapl_id, false, false); use_file_locking = H5.H5Pget_use_file_locking(fapl_id); ignore_disabled_file_locking = H5.H5Pget_ignore_disabled_file_locking(fapl_id); assertFalse("H5P_file_locking", use_file_locking); assertFalse("H5P_file_locking", ignore_disabled_file_locking); // true values (typically the default) H5.H5Pset_file_locking(fapl_id, true, true); use_file_locking = H5.H5Pget_use_file_locking(fapl_id); ignore_disabled_file_locking = H5.H5Pget_ignore_disabled_file_locking(fapl_id); assertTrue("H5P_file_locking", use_file_locking); assertTrue("H5P_file_locking", ignore_disabled_file_locking); } catch (HDF5PropertyListInterfaceException err) { // parallel is not supported if (err.getMinorErrorNumber() != HDF5Constants.H5E_UNSUPPORTED) { err.printStackTrace(); fail("H5P_test_file_locking: " + err); } } catch (Throwable err) { err.printStackTrace(); fail("H5P_test_file_locking: " + err); } } }