/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package test; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException; import org.junit.After; import org.junit.Before; import org.junit.Ignore; import org.junit.Rule; import org.junit.Test; import org.junit.rules.TestName; public class TestH5R { @Rule public TestName testname = new TestName(); private static final String H5_FILE = "testH5R.h5"; private static final int DIM_X = 4; private static final int DIM_Y = 6; long H5fid = -1; long H5dsid = -1; long H5did = -1; long H5gid = -1; long H5did2 = -1; long[] H5dims = { DIM_X, DIM_Y }; int[][] dset_data = new int[DIM_X][DIM_Y]; int FILLVAL = 99; private final void _deleteFile(String filename) { File file = null; try { file = new File(filename); } catch (Throwable err) {} if (file.exists()) { try {file.delete();} catch (SecurityException e) {e.printStackTrace();} } assertFalse("TestH5R._deleteFile file still exists ", file.exists()); } private final long _createDataset(long fid, long dsid, String name, long dapl) { long did = -1; try { did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } assertTrue("TestH5R._createDataset: ", did > 0); return did; } private final long _createGroup(long fid, String name) { long gid = -1; try { gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } assertTrue("TestH5R._createGroup: ",gid > 0); return gid; } @Before public void createH5file() throws NullPointerException, HDF5Exception { assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); System.out.print(testname.getMethodName()); try { H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5dsid = H5.H5Screate_simple(2, H5dims, null); H5gid = _createGroup(H5fid, "Group1"); H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT); H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); // Initialize the dataset. for (int indx = 0; indx < DIM_X; indx++) for (int jndx = 0; jndx < DIM_Y; jndx++) dset_data[indx][jndx] = FILLVAL; try { if (H5did >= 0) H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data[0]); } catch (Exception e) { e.printStackTrace(); } } catch (Throwable err) { err.printStackTrace(); fail("TestH5R.createH5file: " + err); } assertTrue("TestH5R.createH5file: H5.H5Fcreate: ",H5fid > 0); assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ",H5dsid > 0); assertTrue("TestH5R.createH5file: _createDataset: ",H5did > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After public void deleteH5file() throws HDF5LibraryException { if (H5dsid > 0) try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} if (H5did > 0) try {H5.H5Dclose(H5did);} catch (Exception ex) {} if (H5fid > 0) try {H5.H5Fclose(H5fid);} catch (Exception ex) {} if (H5gid > 0) try {H5.H5Gclose(H5gid);} catch (Exception ex) {} if (H5did2 > 0) try {H5.H5Dclose(H5did2);} catch (Exception ex) {} _deleteFile(H5_FILE); System.out.println(); } // Test v1.8 APIs params /* * @Ignore public void testH5Rget_name() { long loc_id = H5fid; int ref_type = * HDF5Constants.H5R_OBJECT; long ret_val = -1; byte[] ref = null; String[] name = {""}; String * objName = "/dset"; * * try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch (Throwable err) { * err.printStackTrace(); fail("H5.H5Rget_name:H5Rcreate " + err); } * * try { ret_val = H5.H5Rget_name(loc_id, ref_type, ref, name, 16); } catch (Throwable err) { * err.printStackTrace(); fail("H5.H5Rget_name: " + err); } * * assertTrue("testH5Rget_name: H5Rget_name", ret_val>0); assertTrue("The name of the object: ", * objName.equals(name[0])); } * * @Ignore public void testH5Rget_obj_type2() { int ref_type=HDF5Constants.H5R_OBJECT; byte[] * ref=null; * * String objName = "/dset"; int obj_type = -1; * * try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch(Throwable err) { * err.printStackTrace(); } * * try { obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, ref); } catch (Throwable * err) { err.printStackTrace(); fail("H5.H5Rget_obj_type2: " + err); } assertEquals(obj_type, * HDF5Constants.H5O_TYPE_DATASET); } * * @Ignore public void testH5Rcreate_refobj() { byte[] ref = null; * * try { ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); } catch (Throwable err) { * err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); } * * @Ignore public void testH5Rcreate_regionrefobj() { byte[] ref = null; try { ref = * H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); } catch (Throwable err) { * err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); } * * @Ignore public void testH5Rdereference() { byte[] ref1 = null; byte[] ref2 = null; long * dataset_id = -1; long group_id = -1; try { //Create reference on dataset ref1 = * H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dataset_id= * H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1); * * //Create reference on group ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); * group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2); * assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0); assertTrue(group_id >= 0); * } catch (Throwable err) { err.printStackTrace(); fail("TestH5Rdereference " + err); } finally { * try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} try {H5.H5Gclose(group_id);} catch * (Exception ex) {} } } * * @Ignore public void testH5Rget_region() { byte[] ref = null; long dsid = -1; try { ref = * H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dsid = * H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); assertNotNull(ref); * assertTrue(dsid >= 0); } catch (Throwable err) { err.printStackTrace(); * fail("TestH5Rget_region: " + err); } finally { try {H5.H5Sclose(dsid);} catch (Exception ex) {} } * } * * @Ignore//(expected = IllegalArgumentException.class) public void testH5Rget_name_Invalidreftype() * throws Throwable { byte[] ref = null; String[] name = {""}; ref = H5.H5Rcreate(H5fid, "/dset", * HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_name(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, name, * 16); } * * @Ignore//(expected = NullPointerException.class) public void testH5Rget_name_NULLreference() * throws Throwable { byte[] ref = null; String[] name = {""}; H5.H5Rget_name(H5fid, * HDF5Constants.H5R_OBJECT, ref, name, 16); } * * @Ignore//(expected = HDF5LibraryException.class) public void * testH5Rget_obj_type2_Invalidreftype() throws Throwable { byte[] ref = null; ref = * H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_obj_type(H5fid, * HDF5Constants.H5R_DATASET_REGION, ref); } * * @Ignore//(expected = HDF5LibraryException.class) public void testH5Rcreate_InvalidObjectName() * throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1); } * * @Ignore//(expected = HDF5LibraryException.class) public void testH5Rcreate_Invalidspace_id() * throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1); * } * * @Ignore//(expected = IllegalArgumentException.class) public void testH5Rcreate_Invalidreftype() * throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_BADTYPE, -1); } * * @Ignore//(expected = IllegalArgumentException.class) public void * testH5Rgetregion_Invalidreftype() throws Throwable { byte[] ref = null; ref = H5.H5Rcreate(H5fid, * "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid, * HDF5Constants.H5R_DATASET_REGION, ref); } * * @Ignore//(expected = IllegalArgumentException.class) public void * testH5Rgetregion_Badreferencetype() throws Throwable { byte[] ref = null; ref = * H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid, * HDF5Constants.H5R_OBJECT, ref); } * * @Ignore//(expected = NullPointerException.class) public void testH5Rgetregion_Nullreference() * throws Throwable { byte[] ref = null; H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, * ref); } * * @Ignore//(expected = NullPointerException.class) public void testH5Rdereference_Nullreference() * throws Throwable { byte[] ref = null; H5.H5Rdereference(H5did2, HDF5Constants.H5P_DEFAULT, * HDF5Constants.H5R_OBJECT, ref); } * * @Ignore//(expected = IllegalArgumentException.class) public void * testH5Rdereference_Invalidreference() throws Throwable { byte[] ref1 = null; byte[] ref2 = null; * ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); ref2 = * H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); H5.H5Rdereference(H5gid, * HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1); } */ // Test v1.12 APIs params @Test public void testH5Rget_object() { int ref_type = HDF5Constants.H5R_OBJECT2; long ret_val = -1; byte[] ref = null; String name = ""; String objName = "/dset"; try { ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_object: H5Rcreate_object " + err); } try { ret_val = H5.H5Rget_type(ref); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_object: H5Rget_type: " + err); } assertTrue("testH5Rget_object: H5Rget_type", ret_val == ref_type); try { name = H5.H5Rget_file_name(ref); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_object: H5Rget_file_name: " + err); } assertTrue("testH5Rget_object: H5Rget_file_name", H5_FILE.equals(name)); try { name = H5.H5Rget_obj_name(ref, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_object: H5Rget_obj_name: " + err); } assertTrue("The name of the object: ", objName.equals(name)); H5.H5Rdestroy(ref); } @Test public void testH5Rget_obj_type3() { int obj_type = -1; byte[] ref = null; String objName = "/dset"; try { ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_obj_type3: H5Rcreate_object " + err); } try { obj_type = H5.H5Rget_obj_type3(ref, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_obj_type3: H5.H5Rget_obj_type3: " + err); } assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET); H5.H5Rdestroy(ref); } @Test public void testH5Rcreate_regionref_object() { byte[] ref = null; String objName = "/dset"; long start[] = {2,2}; // Starting location of hyperslab long stride[] = {1,1}; // Stride of hyperslab long count[] = {1,1}; // Element count of hyperslab long block[] = {3,3}; // Block size of hyperslab // Select 3x3 hyperslab for reference try { H5.H5Sselect_hyperslab(H5dsid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_object: H5Sselect_hyperslab " + err); } try { ref = H5.H5Rcreate_region(H5fid, objName, H5dsid, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_object: H5Rcreate_region " + err); } assertNotNull(ref); H5.H5Rdestroy(ref); } // These tests need to be updated with new APIs // @Test// // public void testH5Rget_group() { // long loc_id = H5fid; // int ref_type = HDF5Constants.H5R_OBJECT2; // long ret_val = -1; // byte[] ref = null; // String name = ""; // String objName = "/dset"; // // try { // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); // } // catch (Throwable err) { // err.printStackTrace(); // fail("testH5Rget_object: H5Rcreate_object " + err); // } // try { // dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1); // // //Create reference on group // ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); // group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2); // assertNotNull(ref1); // assertNotNull(ref2); // assertTrue(dataset_id >= 0); // assertTrue(group_id >= 0); // } // catch (Throwable err) { // err.printStackTrace(); // fail("TestH5Rdereference " + err); // } // finally { // try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} // try {H5.H5Gclose(group_id);} catch (Exception ex) {} // } // } // @Test// // public void testH5Rget_region_dataset() { // long loc_id = H5fid; // int ref_type = HDF5Constants.H5R_OBJECT2; // long ret_val = -1; // byte[] ref = null; // String name = ""; // String objName = "/dset"; // // try { // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); // } // catch (Throwable err) { // err.printStackTrace(); // fail("testH5Rget_object: H5Rcreate_object " + err); // } // try { // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); // assertNotNull(ref); // assertTrue(dsid >= 0); // } // catch (Throwable err) { // err.printStackTrace(); // fail("TestH5Rget_region: " + err); // } // finally { // try {H5.H5Sclose(dsid);} catch (Exception ex) {} // } // } // @Test// // public void testH5Rget_attr() { // long loc_id = H5fid; // int ref_type = HDF5Constants.H5R_OBJECT2; // long ret_val = -1; // byte[] ref = null; // String name = ""; // String objName = "/dset"; // // try { // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); // } // catch (Throwable err) { // err.printStackTrace(); // fail("testH5Rget_object: H5Rcreate_object " + err); // } // try { // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); // assertNotNull(ref); // assertTrue(dsid >= 0); // } // catch (Throwable err) { // err.printStackTrace(); // fail("TestH5Rget_region: " + err); // } // finally { // try {H5.H5Sclose(dsid);} catch (Exception ex) {} // } // } // Test parameters to H5Rcreate_object @Test(expected = NullPointerException.class) public void testH5Rcreate_object_Nullname() throws Throwable { String name = null; H5.H5Rcreate_object(H5fid, name, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) public void testH5Rget_name_Invalidloc() throws Throwable { String name= ""; H5.H5Rcreate_object(-1, name, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rcreate_region @Test(expected = NullPointerException.class) public void testH5Rcreate_region_Nullname() throws Throwable { String name = null; H5.H5Rcreate_region(H5fid, name, -1, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) public void testH5Rcreate_region_Invalidloc() throws Throwable { String name= ""; H5.H5Rcreate_region(-1, name, -1, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rcreate_attr @Test(expected = NullPointerException.class) public void testH5Rcreate_attr_Nullname() throws Throwable { String name = null; String attrname = ""; H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT); } @Test(expected = NullPointerException.class) public void testH5Rcreate_attr_Nullattrname() throws Throwable { String name = ""; String attrname = null; H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) public void testH5Rcreate_attr_Invalidloc() throws Throwable { String name= ""; String attrname= ""; H5.H5Rcreate_attr(-1, name, attrname, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rdestroy @Test(expected = NullPointerException.class) public void testH5Rdestroy_Nullref() throws Throwable { byte[] ref = null; H5.H5Rdestroy(ref); } // Test parameters to H5Rget_type @Test(expected = NullPointerException.class) public void testH5Rget_type_Nullref() throws Throwable { byte[] ref = null; H5.H5Rget_type(ref); } // Test parameters to H5Requal @Test(expected = NullPointerException.class) public void testH5Requal_Nullref1() throws Throwable { byte[] ref1 = null; byte[] ref2 = {0,0,0,0}; H5.H5Requal(ref1, ref2); } @Test(expected = NullPointerException.class) public void testH5Requal_Nullref2() throws Throwable { byte[] ref1 = {0,0,0,0}; byte[] ref2 = null; H5.H5Requal(ref1, ref2); } // Test parameters to H5Rcopy @Test(expected = NullPointerException.class) public void testH5Rcopy_Nullref1() throws Throwable { byte[] ref1 = null; byte[] ref2 = H5.H5Rcopy(ref1); } // Test parameters to H5Ropen_object @Test(expected = NullPointerException.class) public void testH5Ropen_object_Nullref() throws Throwable { byte[] ref = null; H5.H5Ropen_object(ref, -1, -1); } // Test parameters to H5Ropen_region @Test(expected = NullPointerException.class) public void testH5Ropen_region_Nullref() throws Throwable { byte[] ref = null; H5.H5Ropen_region(ref, -1, -1); } // Test parameters to H5Ropen_attr @Test(expected = NullPointerException.class) public void testH5Ropen_attr_Nullref() throws Throwable { byte[] ref = null; H5.H5Ropen_attr(ref, -1, -1); } // Test parameters to H5Rget_obj_type3 @Test(expected = NullPointerException.class) public void testH5Rget_obj_type3_Nullref() throws Throwable { byte[] ref = null; H5.H5Rget_obj_type3(ref, -1); } // Test parameters to H5Rget_file_name @Test(expected = NullPointerException.class) public void testH5Rget_file_name_Nullref() throws Throwable { byte[] ref = null; H5.H5Rget_file_name(ref); } // Test parameters to H5Rget_obj_name @Test(expected = NullPointerException.class) public void testH5Rget_obj_name_Nullref() throws Throwable { byte[] ref = null; H5.H5Rget_obj_name(ref, -1); } // Test parameters to H5Rget_attr_name @Test(expected = NullPointerException.class) public void testH5Rget_attr_name_Nullref() throws Throwable { byte[] ref = null; H5.H5Rget_attr_name(ref); } }