/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /*------------------------------------------------------------------------- * * Created: H5ACmpio.c * Jun 20 2015 * Quincey Koziol * * Purpose: Functions in this file implement support for parallel * I/O cache functionality * *------------------------------------------------------------------------- */ /****************/ /* Module Setup */ /****************/ #include "H5ACmodule.h" /* This source code file is part of the H5AC module */ #define H5F_FRIEND /*suppress error about including H5Fpkg */ /***********/ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5ACpkg.h" /* Metadata cache */ #include "H5Cprivate.h" /* Cache */ #include "H5Eprivate.h" /* Error handling */ #include "H5Fpkg.h" /* Files */ #include "H5MMprivate.h" /* Memory management */ #ifdef H5_HAVE_PARALLEL /****************/ /* Local Macros */ /****************/ /******************/ /* Local Typedefs */ /******************/ /**************************************************************************** * * structure H5AC_slist_entry_t * * The dirty entry list maintained via the d_slist_ptr field of H5AC_aux_t * and the cleaned entry list maintained via the c_slist_ptr field of * H5AC_aux_t are just lists of the file offsets of the dirty/cleaned * entries. Unfortunately, the slist code makes us define a dynamically * allocated structure to store these offsets in. This structure serves * that purpose. Its fields are as follows: * * addr: file offset of a metadata entry. Entries are added to this * list (if they aren't there already) when they are marked * dirty in an unprotect, inserted, or moved. They are * removed when they appear in a clean entries broadcast. * ****************************************************************************/ typedef struct H5AC_slist_entry_t { haddr_t addr; } H5AC_slist_entry_t; /* User data for address list building callbacks */ typedef struct H5AC_addr_list_ud_t { H5AC_aux_t * aux_ptr; /* 'Auxiliary' parallel cache info */ haddr_t * addr_buf_ptr; /* Array to store addresses */ int i; /* Counter for position in array */ } H5AC_addr_list_ud_t; /********************/ /* Local Prototypes */ /********************/ static herr_t H5AC__broadcast_candidate_list(H5AC_t *cache_ptr, int *num_entries_ptr, haddr_t **haddr_buf_ptr_ptr); static herr_t H5AC__broadcast_clean_list(H5AC_t *cache_ptr); static herr_t H5AC__construct_candidate_list(H5AC_t *cache_ptr, H5AC_aux_t *aux_ptr, int sync_point_op); static herr_t H5AC__copy_candidate_list_to_buffer(const H5AC_t *cache_ptr, int *num_entries_ptr, haddr_t **haddr_buf_ptr_ptr); static herr_t H5AC__propagate_and_apply_candidate_list(H5F_t *f, hid_t dxpl_id); static herr_t H5AC__propagate_flushed_and_still_clean_entries_list(H5F_t *f, hid_t dxpl_id); static herr_t H5AC__receive_haddr_list(MPI_Comm mpi_comm, int *num_entries_ptr, haddr_t **haddr_buf_ptr_ptr); static herr_t H5AC__receive_candidate_list(const H5AC_t *cache_ptr, int *num_entries_ptr, haddr_t **haddr_buf_ptr_ptr); static herr_t H5AC__receive_and_apply_clean_list(H5F_t *f, hid_t dxpl_id); static herr_t H5AC__tidy_cache_0_lists(H5AC_t *cache_ptr, int num_candidates, haddr_t *candidates_list_ptr); static herr_t H5AC__rsp__dist_md_write__flush(H5F_t *f, hid_t dxpl_id); static herr_t H5AC__rsp__dist_md_write__flush_to_min_clean(H5F_t *f, hid_t dxpl_id); static herr_t H5AC__rsp__p0_only__flush(H5F_t *f, hid_t dxpl_id); static herr_t H5AC__rsp__p0_only__flush_to_min_clean(H5F_t *f, hid_t dxpl_id); /*********************/ /* Package Variables */ /*********************/ /* Declare a free list to manage the H5AC_aux_t struct */ H5FL_DEFINE(H5AC_aux_t); /*****************************/ /* Library Private Variables */ /*****************************/ /*******************/ /* Local Variables */ /*******************/ /* Declare a free list to manage the H5AC_slist_entry_t struct */ H5FL_DEFINE_STATIC(H5AC_slist_entry_t); /*------------------------------------------------------------------------- * Function: H5AC__set_sync_point_done_callback * * Purpose: Set the value of the sync_point_done callback. This * callback is used by the parallel test code to verify * that the expected writes and only the expected writes * take place during a sync point. * * Return: Non-negative on success/Negative on failure * * Programmer: John Mainzer * 5/9/10 * *------------------------------------------------------------------------- */ herr_t H5AC__set_sync_point_done_callback(H5C_t * cache_ptr, void (* sync_point_done)(int num_writes, haddr_t * written_entries_tbl)) { H5AC_aux_t * aux_ptr; FUNC_ENTER_PACKAGE_NOERR /* Sanity checks */ HDassert(cache_ptr); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); aux_ptr->sync_point_done = sync_point_done; FUNC_LEAVE_NOAPI(SUCCEED) } /* H5AC__set_sync_point_done_callback() */ /*------------------------------------------------------------------------- * Function: H5AC__set_write_done_callback * * Purpose: Set the value of the write_done callback. This callback * is used to improve performance of the parallel test bed * for the cache. * * Return: Non-negative on success/Negative on failure * * Programmer: John Mainzer * 5/11/06 * *------------------------------------------------------------------------- */ herr_t H5AC__set_write_done_callback(H5C_t * cache_ptr, void (* write_done)(void)) { H5AC_aux_t * aux_ptr; FUNC_ENTER_PACKAGE_NOERR /* Sanity checks */ HDassert(cache_ptr); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); aux_ptr->write_done = write_done; FUNC_LEAVE_NOAPI(SUCCEED) } /* H5AC__set_write_done_callback() */ /*------------------------------------------------------------------------- * Function: H5AC_add_candidate() * * Purpose: Add the supplied metadata entry address to the candidate * list. Verify that each entry added does not appear in * the list prior to its insertion. * * This function is intended for used in constructing list * of entried to be flushed during sync points. It shouldn't * be called anywhere else. * * Return: Non-negative on success/Negative on failure * * Programmer: John Mainzer * 3/17/10 * *------------------------------------------------------------------------- */ herr_t H5AC_add_candidate(H5AC_t * cache_ptr, haddr_t addr) { H5AC_aux_t * aux_ptr; H5AC_slist_entry_t * slist_entry_ptr = NULL; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Sanity checks */ HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); HDassert(aux_ptr->candidate_slist_ptr != NULL); /* Construct an entry for the supplied address, and insert * it into the candidate slist. */ if(NULL == (slist_entry_ptr = H5FL_MALLOC(H5AC_slist_entry_t))) HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "Can't allocate candidate slist entry") slist_entry_ptr->addr = addr; if(H5SL_insert(aux_ptr->candidate_slist_ptr, slist_entry_ptr, &(slist_entry_ptr->addr)) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTINSERT, FAIL, "can't insert entry into dirty entry slist") done: /* Clean up on error */ if(ret_value < 0) if(slist_entry_ptr) slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_add_candidate() */ /*------------------------------------------------------------------------- * * Function: H5AC__broadcast_candidate_list() * * Purpose: Broadcast the contents of the process 0 candidate entry * slist. In passing, also remove all entries from said * list. As the application of this will be handled by * the same functions on all processes, construct and * return a copy of the list in the same format as that * received by the other processes. Note that if this * copy is returned in *haddr_buf_ptr_ptr, the caller * must free it. * * This function must only be called by the process with * MPI_rank 0. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 7/1/05 * *------------------------------------------------------------------------- */ static herr_t H5AC__broadcast_candidate_list(H5AC_t *cache_ptr, int *num_entries_ptr, haddr_t **haddr_buf_ptr_ptr) { H5AC_aux_t * aux_ptr = NULL; haddr_t * haddr_buf_ptr = NULL; int mpi_result; int num_entries; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->mpi_rank == 0); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); HDassert(aux_ptr->candidate_slist_ptr != NULL); HDassert(num_entries_ptr != NULL); HDassert(*num_entries_ptr == 0); HDassert(haddr_buf_ptr_ptr != NULL); HDassert(*haddr_buf_ptr_ptr == NULL); /* First broadcast the number of entries in the list so that the * receivers can set up buffers to receive them. If there aren't * any, we are done. */ num_entries = (int)H5SL_count(aux_ptr->candidate_slist_ptr); if(MPI_SUCCESS != (mpi_result = MPI_Bcast(&num_entries, 1, MPI_INT, 0, aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_result) if(num_entries > 0) { size_t buf_size = 0; int chk_num_entries = 0; /* convert the candidate list into the format we * are used to receiving from process 0, and also load it * into a buffer for transmission. */ if(H5AC__copy_candidate_list_to_buffer(cache_ptr, &chk_num_entries, &haddr_buf_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't construct candidate buffer.") HDassert(chk_num_entries == num_entries); HDassert(haddr_buf_ptr != NULL); /* Now broadcast the list of candidate entries */ buf_size = sizeof(haddr_t) * (size_t)num_entries; if(MPI_SUCCESS != (mpi_result = MPI_Bcast((void *)haddr_buf_ptr, (int)buf_size, MPI_BYTE, 0, aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_result) } /* end if */ /* Pass the number of entries and the buffer pointer * back to the caller. Do this so that we can use the same code * to apply the candidate list to all the processes. */ *num_entries_ptr = num_entries; *haddr_buf_ptr_ptr = haddr_buf_ptr; done: if(ret_value < 0) if(haddr_buf_ptr) haddr_buf_ptr = (haddr_t *)H5MM_xfree((void *)haddr_buf_ptr); FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__broadcast_candidate_list() */ /*------------------------------------------------------------------------- * * Function: H5AC__broadcast_clean_list_cb() * * Purpose: Skip list callback for building array of addresses for * broadcasting the clean list. * * Return: Non-negative on success/Negative on failure. * * Programmer: Quincey Koziol, 6/12/15 * *------------------------------------------------------------------------- */ static herr_t H5AC__broadcast_clean_list_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) { H5AC_slist_entry_t * slist_entry_ptr = (H5AC_slist_entry_t *)_item; /* Address of item */ H5AC_addr_list_ud_t * udata = (H5AC_addr_list_ud_t *)_udata; /* Context for callback */ haddr_t addr; FUNC_ENTER_STATIC_NOERR /* Sanity checks */ HDassert(slist_entry_ptr); HDassert(udata); /* Store the entry's address in the buffer */ addr = slist_entry_ptr->addr; udata->addr_buf_ptr[udata->i] = addr; udata->i++; /* now release the entry */ slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); /* and also remove the matching entry from the dirtied list * if it exists. */ if(NULL != (slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(udata->aux_ptr->d_slist_ptr, (void *)(&addr)))) slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); FUNC_LEAVE_NOAPI(SUCCEED) } /* H5AC__broadcast_clean_list_cb() */ /*------------------------------------------------------------------------- * * Function: H5AC__broadcast_clean_list() * * Purpose: Broadcast the contents of the process 0 cleaned entry * slist. In passing, also remove all entries from said * list, and also remove any matching entries from the dirtied * slist. * * This function must only be called by the process with * MPI_rank 0. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 7/1/05 * *------------------------------------------------------------------------- */ static herr_t H5AC__broadcast_clean_list(H5AC_t * cache_ptr) { haddr_t * addr_buf_ptr = NULL; H5AC_aux_t * aux_ptr; int mpi_result; int num_entries = 0; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->mpi_rank == 0); HDassert(aux_ptr->c_slist_ptr != NULL); /* First broadcast the number of entries in the list so that the * receives can set up a buffer to receive them. If there aren't * any, we are done. */ num_entries = (int)H5SL_count(aux_ptr->c_slist_ptr); if(MPI_SUCCESS != (mpi_result = MPI_Bcast(&num_entries, 1, MPI_INT, 0, aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_result) if(num_entries > 0) { H5AC_addr_list_ud_t udata; size_t buf_size; /* allocate a buffer to store the list of entry base addresses in */ buf_size = sizeof(haddr_t) * (size_t)num_entries; if(NULL == (addr_buf_ptr = (haddr_t *)H5MM_malloc(buf_size))) HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for addr buffer") /* Set up user data for callback */ udata.aux_ptr = aux_ptr; udata.addr_buf_ptr = addr_buf_ptr; udata.i = 0; /* Free all the clean list entries, building the address list in the callback */ /* (Callback also removes the matching entries from the dirtied list) */ if(H5SL_free(aux_ptr->c_slist_ptr, H5AC__broadcast_clean_list_cb, &udata) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFREE, FAIL, "Can't build address list for clean entries") /* Now broadcast the list of cleaned entries */ if(MPI_SUCCESS != (mpi_result = MPI_Bcast((void *)addr_buf_ptr, (int)buf_size, MPI_BYTE, 0, aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_result) } /* end if */ /* if it is defined, call the sync point done callback. Note * that this callback is defined purely for testing purposes, * and should be undefined under normal operating circumstances. */ if(aux_ptr->sync_point_done) (aux_ptr->sync_point_done)(num_entries, addr_buf_ptr); done: if(addr_buf_ptr) addr_buf_ptr = (haddr_t *)H5MM_xfree((void *)addr_buf_ptr); FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__broadcast_clean_list() */ /*------------------------------------------------------------------------- * Function: H5AC__construct_candidate_list() * * Purpose: In the parallel case when the metadata_write_strategy is * H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED, process 0 uses * this function to construct the list of cache entries to * be flushed. This list is then propagated to the other * caches, and then flushed in a distributed fashion. * * The sync_point_op parameter is used to determine the extent * of the flush. * * Return: Non-negative on success/Negative on failure * * Programmer: John Mainzer * 3/17/10 * *------------------------------------------------------------------------- */ static herr_t H5AC__construct_candidate_list(H5AC_t *cache_ptr, H5AC_aux_t *aux_ptr, int sync_point_op) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(cache_ptr != NULL); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); HDassert((sync_point_op == H5AC_SYNC_POINT_OP__FLUSH_CACHE) || (aux_ptr->mpi_rank == 0)); HDassert(aux_ptr->d_slist_ptr != NULL); HDassert(aux_ptr->c_slist_ptr != NULL); HDassert(H5SL_count(aux_ptr->c_slist_ptr) == 0); HDassert(aux_ptr->candidate_slist_ptr != NULL); HDassert(H5SL_count(aux_ptr->candidate_slist_ptr) == 0); HDassert((sync_point_op == H5AC_SYNC_POINT_OP__FLUSH_TO_MIN_CLEAN) || (sync_point_op == H5AC_SYNC_POINT_OP__FLUSH_CACHE)); switch(sync_point_op) { case H5AC_SYNC_POINT_OP__FLUSH_TO_MIN_CLEAN: if(H5C_construct_candidate_list__min_clean((H5C_t *)cache_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5C_construct_candidate_list__min_clean() failed.") break; case H5AC_SYNC_POINT_OP__FLUSH_CACHE: if(H5C_construct_candidate_list__clean_cache((H5C_t *)cache_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5C_construct_candidate_list__clean_cache() failed.") break; default: HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unknown sync point operation.") break; } /* end switch */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__construct_candidate_list() */ /*------------------------------------------------------------------------- * * Function: H5AC__copy_candidate_list_to_buffer_cb * * Purpose: Skip list callback for building array of addresses for * broadcasting the candidate list. * * Return: Return SUCCEED on success, and FAIL on failure. * * Programmer: Quincey Koziol, 6/12/15 * *------------------------------------------------------------------------- */ static herr_t H5AC__copy_candidate_list_to_buffer_cb(void *_item, void H5_ATTR_UNUSED *_key, void *_udata) { H5AC_slist_entry_t * slist_entry_ptr = (H5AC_slist_entry_t *)_item; /* Address of item */ H5AC_addr_list_ud_t * udata = (H5AC_addr_list_ud_t *)_udata; /* Context for callback */ FUNC_ENTER_STATIC_NOERR /* Sanity checks */ HDassert(slist_entry_ptr); HDassert(udata); /* Store the entry's address in the buffer */ udata->addr_buf_ptr[udata->i] = slist_entry_ptr->addr; udata->i++; /* now release the entry */ slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); FUNC_LEAVE_NOAPI(SUCCEED) } /* H5AC__copy_candidate_list_to_buffer_cb() */ /*------------------------------------------------------------------------- * * Function: H5AC__copy_candidate_list_to_buffer * * Purpose: Allocate buffer(s) and copy the contents of the candidate * entry slist into it (them). In passing, remove all * entries from the candidate slist. Note that the * candidate slist must not be empty. * * If MPI_Offset_buf_ptr_ptr is not NULL, allocate a buffer * of MPI_Offset, copy the contents of the candidate * entry list into it with the appropriate conversions, * and return the base address of the buffer in * *MPI_Offset_buf_ptr. Note that this is the buffer * used by process 0 to transmit the list of entries to * be flushed to all other processes (in this file group). * * Similarly, allocate a buffer of haddr_t, load the contents * of the candidate list into this buffer, and return its * base address in *haddr_buf_ptr_ptr. Note that this * latter buffer is constructed unconditionally. * * In passing, also remove all entries from the candidate * entry slist. * * Return: Return SUCCEED on success, and FAIL on failure. * * Programmer: John Mainzer, 4/19/10 * *------------------------------------------------------------------------- */ static herr_t H5AC__copy_candidate_list_to_buffer(const H5AC_t *cache_ptr, int *num_entries_ptr, haddr_t **haddr_buf_ptr_ptr) { H5AC_aux_t * aux_ptr = NULL; H5AC_addr_list_ud_t udata; haddr_t * haddr_buf_ptr = NULL; size_t buf_size; int num_entries = 0; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); HDassert(aux_ptr->candidate_slist_ptr != NULL); HDassert(H5SL_count(aux_ptr->candidate_slist_ptr) > 0); HDassert(num_entries_ptr != NULL); HDassert(*num_entries_ptr == 0); HDassert(haddr_buf_ptr_ptr != NULL); HDassert(*haddr_buf_ptr_ptr == NULL); num_entries = (int)H5SL_count(aux_ptr->candidate_slist_ptr); /* allocate a buffer(s) to store the list of candidate entry * base addresses in */ buf_size = sizeof(haddr_t) * (size_t)num_entries; if(NULL == (haddr_buf_ptr = (haddr_t *)H5MM_malloc(buf_size))) HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for haddr buffer") /* Set up user data for callback */ udata.aux_ptr = aux_ptr; udata.addr_buf_ptr = haddr_buf_ptr; udata.i = 0; /* Free all the candidate list entries, building the address list in the callback */ if(H5SL_free(aux_ptr->candidate_slist_ptr, H5AC__copy_candidate_list_to_buffer_cb, &udata) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFREE, FAIL, "Can't build address list for candidate entries") /* Pass the number of entries and the buffer pointer * back to the caller. */ *num_entries_ptr = num_entries; *haddr_buf_ptr_ptr = haddr_buf_ptr; done: if(ret_value < 0) if(haddr_buf_ptr) haddr_buf_ptr = (haddr_t *)H5MM_xfree((void *)haddr_buf_ptr); FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__copy_candidate_list_to_buffer() */ /*------------------------------------------------------------------------- * * Function: H5AC__log_deleted_entry() * * Purpose: Log an entry which has been deleted. * * Only called for mpi_rank 0. We must make sure that the entry * doesn't appear in the cleaned or dirty entry lists. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 6/29/05 * *------------------------------------------------------------------------- */ herr_t H5AC__log_deleted_entry(const H5AC_info_t *entry_ptr) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; H5AC_slist_entry_t * slist_entry_ptr = NULL; haddr_t addr; FUNC_ENTER_PACKAGE_NOERR /* Sanity checks */ HDassert(entry_ptr); addr = entry_ptr->addr; cache_ptr = entry_ptr->cache_ptr; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->mpi_rank == 0); HDassert(aux_ptr->d_slist_ptr != NULL); HDassert(aux_ptr->c_slist_ptr != NULL); /* if the entry appears in the dirtied entry slist, remove it. */ if(NULL != (slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->d_slist_ptr, (void *)(&addr)))) slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); /* if the entry appears in the cleaned entry slist, remove it. */ if(NULL != (slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->c_slist_ptr, (void *)(&addr)))) slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); FUNC_LEAVE_NOAPI(SUCCEED) } /* H5AC__log_deleted_entry() */ /*------------------------------------------------------------------------- * * Function: H5AC__log_dirtied_entry() * * Purpose: Update the dirty_bytes count for a newly dirtied entry. * * If mpi_rank isn't 0, this simply means adding the size * of the entries to the dirty_bytes count. * * If mpi_rank is 0, we must first check to see if the entry * appears in the dirty entries slist. If it is, do nothing. * If it isn't, add the size to th dirty_bytes count, add the * entry to the dirty entries slist, and remove it from the * cleaned list (if it is present there). * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 6/29/05 * *------------------------------------------------------------------------- */ herr_t H5AC__log_dirtied_entry(const H5AC_info_t *entry_ptr) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(entry_ptr); HDassert(entry_ptr->is_dirty == FALSE); cache_ptr = entry_ptr->cache_ptr; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); if(aux_ptr->mpi_rank == 0) { H5AC_slist_entry_t *slist_entry_ptr; haddr_t addr = entry_ptr->addr; /* Sanity checks */ HDassert(aux_ptr->d_slist_ptr != NULL); HDassert(aux_ptr->c_slist_ptr != NULL); if(NULL == H5SL_search(aux_ptr->d_slist_ptr, (void *)(&addr))) { /* insert the address of the entry in the dirty entry list, and * add its size to the dirty_bytes count. */ if(NULL == (slist_entry_ptr = H5FL_MALLOC(H5AC_slist_entry_t))) HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "Can't allocate dirty slist entry .") slist_entry_ptr->addr = addr; if(H5SL_insert(aux_ptr->d_slist_ptr, slist_entry_ptr, &(slist_entry_ptr->addr)) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTINSERT, FAIL, "can't insert entry into dirty entry slist.") aux_ptr->dirty_bytes += entry_ptr->size; #if H5AC_DEBUG_DIRTY_BYTES_CREATION aux_ptr->unprotect_dirty_bytes += entry_ptr->size; aux_ptr->unprotect_dirty_bytes_updates += 1; #endif /* H5AC_DEBUG_DIRTY_BYTES_CREATION */ } /* end if */ /* the entry is dirty. If it exists on the cleaned entries list, * remove it. */ if(NULL != (slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->c_slist_ptr, (void *)(&addr)))) slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); } /* end if */ else { aux_ptr->dirty_bytes += entry_ptr->size; #if H5AC_DEBUG_DIRTY_BYTES_CREATION aux_ptr->unprotect_dirty_bytes += entry_size; aux_ptr->unprotect_dirty_bytes_updates += 1; #endif /* H5AC_DEBUG_DIRTY_BYTES_CREATION */ } /* end else */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__log_dirtied_entry() */ /*------------------------------------------------------------------------- * * Function: H5AC__log_flushed_entry() * * Purpose: Update the clean entry slist for the flush of an entry -- * specifically, if the entry has been cleared, remove it * from both the cleaned and dirtied lists if it is present. * Otherwise, if the entry was dirty, insert the indicated * entry address in the clean slist if it isn't there already. * * This function is only used in PHDF5, and should only * be called for the process with mpi rank 0. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 6/29/05 * *------------------------------------------------------------------------- */ herr_t H5AC__log_flushed_entry(H5C_t *cache_ptr, haddr_t addr, hbool_t was_dirty, unsigned flags) { hbool_t cleared; H5AC_aux_t * aux_ptr; H5AC_slist_entry_t * slist_entry_ptr = NULL; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->mpi_rank == 0); HDassert(aux_ptr->c_slist_ptr != NULL); /* Set local flags */ cleared = ((flags & H5C__FLUSH_CLEAR_ONLY_FLAG) != 0); if(cleared) { /* If the entry has been cleared, must remove it from both the * cleaned list and the dirtied list. */ if(NULL != (slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->c_slist_ptr, (void *)(&addr)))) slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); if(NULL != (slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->d_slist_ptr, (void *)(&addr)))) slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); } /* end if */ else if(was_dirty) { if(NULL == H5SL_search(aux_ptr->c_slist_ptr, (void *)(&addr))) { /* insert the address of the entry in the clean entry list. */ if(NULL == (slist_entry_ptr = H5FL_MALLOC(H5AC_slist_entry_t))) HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "Can't allocate clean slist entry .") slist_entry_ptr->addr = addr; if(H5SL_insert(aux_ptr->c_slist_ptr, slist_entry_ptr, &(slist_entry_ptr->addr)) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTINSERT, FAIL, "can't insert entry into clean entry slist.") } /* end if */ } /* end else-if */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__log_flushed_entry() */ /*------------------------------------------------------------------------- * * Function: H5AC__log_inserted_entry() * * Purpose: Update the dirty_bytes count for a newly inserted entry. * * If mpi_rank isnt 0, this simply means adding the size * of the entry to the dirty_bytes count. * * If mpi_rank is 0, we must also add the entry to the * dirty entries slist. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 6/30/05 * *------------------------------------------------------------------------- */ herr_t H5AC__log_inserted_entry(const H5AC_info_t *entry_ptr) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(entry_ptr); cache_ptr = entry_ptr->cache_ptr; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); if(aux_ptr->mpi_rank == 0) { H5AC_slist_entry_t *slist_entry_ptr; HDassert(aux_ptr->d_slist_ptr != NULL); HDassert(aux_ptr->c_slist_ptr != NULL); /* Entry to insert should not be in dirty list currently */ if(NULL != H5SL_search(aux_ptr->d_slist_ptr, (const void *)(&entry_ptr->addr))) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Inserted entry already in dirty slist.") /* insert the address of the entry in the dirty entry list, and * add its size to the dirty_bytes count. */ if(NULL == (slist_entry_ptr = H5FL_MALLOC(H5AC_slist_entry_t))) HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "Can't allocate dirty slist entry .") slist_entry_ptr->addr = entry_ptr->addr; if(H5SL_insert(aux_ptr->d_slist_ptr, slist_entry_ptr, &(slist_entry_ptr->addr)) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTINSERT, FAIL, "can't insert entry into dirty entry slist.") /* Entry to insert should not be in clean list either */ if(NULL != H5SL_search(aux_ptr->c_slist_ptr, (const void *)(&entry_ptr->addr))) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Inserted entry in clean slist.") } /* end if */ aux_ptr->dirty_bytes += entry_ptr->size; #if H5AC_DEBUG_DIRTY_BYTES_CREATION aux_ptr->insert_dirty_bytes += size; aux_ptr->insert_dirty_bytes_updates += 1; #endif /* H5AC_DEBUG_DIRTY_BYTES_CREATION */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__log_inserted_entry() */ /*------------------------------------------------------------------------- * * Function: H5AC__log_moved_entry() * * Purpose: Update the dirty_bytes count for a moved entry. * * WARNING * * At present, the way that the move call is used ensures * that the moved entry is present in all caches by * moving in a collective operation and immediately after * unprotecting the target entry. * * This function uses this invariant, and will cause arcane * failures if it is not met. If maintaining this invariant * becomes impossible, we will have to rework this function * extensively, and likely include a bit of IPC for * synchronization. A better option might be to subsume * move in the unprotect operation. * * Given that the target entry is in all caches, the function * proceeds as follows: * * For processes with mpi rank other 0, it simply checks to * see if the entry was dirty prior to the move, and adds * the entries size to the dirty bytes count. * * In the process with mpi rank 0, the function first checks * to see if the entry was dirty prior to the move. If it * was, and if the entry doesn't appear in the dirtied list * under its old address, it adds the entry's size to the * dirty bytes count. * * The rank 0 process then removes any references to the * entry under its old address from the cleands and dirtied * lists, and inserts an entry in the dirtied list under the * new address. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 6/30/05 * *------------------------------------------------------------------------- */ herr_t H5AC__log_moved_entry(const H5F_t *f, haddr_t old_addr, haddr_t new_addr) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; hbool_t entry_in_cache; hbool_t entry_dirty; size_t entry_size; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(f); HDassert(f->shared); cache_ptr = (H5AC_t *)f->shared->cache; HDassert(cache_ptr); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); /* get entry status, size, etc here */ if(H5C_get_entry_status(f, old_addr, &entry_size, &entry_in_cache, &entry_dirty, NULL, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't get entry status.") if(!entry_in_cache) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "entry not in cache.") if(aux_ptr->mpi_rank == 0) { H5AC_slist_entry_t * slist_entry_ptr; HDassert(aux_ptr->d_slist_ptr != NULL); HDassert(aux_ptr->c_slist_ptr != NULL); /* if the entry appears in the cleaned entry slist, under its old * address, remove it. */ if(NULL != (slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->c_slist_ptr, (void *)(&old_addr)))) slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, slist_entry_ptr); /* if the entry appears in the dirtied entry slist under its old * address, remove it, but don't free it. Set addr to new_addr. */ if(NULL != (slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->d_slist_ptr, (void *)(&old_addr)))) slist_entry_ptr->addr = new_addr; else { /* otherwise, allocate a new entry that is ready * for insertion, and increment dirty_bytes. * * Note that the fact that the entry wasn't in the dirtied * list under its old address implies that it must have * been clean to start with. */ HDassert(!entry_dirty); if(NULL == (slist_entry_ptr = H5FL_MALLOC(H5AC_slist_entry_t))) HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "Can't allocate dirty slist entry .") slist_entry_ptr->addr = new_addr; aux_ptr->dirty_bytes += entry_size; #if H5AC_DEBUG_DIRTY_BYTES_CREATION aux_ptr->move_dirty_bytes += entry_size; aux_ptr->move_dirty_bytes_updates += 1; #endif /* H5AC_DEBUG_DIRTY_BYTES_CREATION */ } /* end else */ /* insert / reinsert the entry in the dirty slist */ if(H5SL_insert(aux_ptr->d_slist_ptr, slist_entry_ptr, &(slist_entry_ptr->addr)) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTINSERT, FAIL, "can't insert entry into dirty entry slist.") } /* end if */ else if(!entry_dirty) { aux_ptr->dirty_bytes += entry_size; #if H5AC_DEBUG_DIRTY_BYTES_CREATION aux_ptr->move_dirty_bytes += entry_size; aux_ptr->move_dirty_bytes_updates += 1; #endif /* H5AC_DEBUG_DIRTY_BYTES_CREATION */ } /* end else-if */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__log_moved_entry() */ /*------------------------------------------------------------------------- * Function: H5AC__propagate_and_apply_candidate_list * * Purpose: Prior to the addition of support for multiple metadata * write strategies, in PHDF5, only the metadata cache with * mpi rank 0 was allowed to write to file. All other * metadata caches on processes with rank greater than 0 * were required to retain dirty entries until they were * notified that the entry was clean. * * This constraint is relaxed with the distributed * metadata write strategy, in which a list of candidate * metadata cache entries is constructed by the process 0 * cache and then distributed to the caches of all the other * processes. Once the listed is distributed, many (if not * all) processes writing writing a unique subset of the * entries, and marking the remainder clean. The subsets * are chosen so that each entry in the list of candidates * is written by exactly one cache, and all entries are * marked as being clean in all caches. * * While the list of candidate cache entries is prepared * elsewhere, this function is the main routine for distributing * and applying the list. It must be run simultaniously on * all processes that have the relevant file open. To ensure * proper synchronization, there is a barrier at the beginning * of this function. * * At present, this function is called under one of two * circumstances: * * 1) Dirty byte creation exceeds some user specified value. * * While metadata reads may occur independently, all * operations writing metadata must be collective. Thus * all metadata caches see the same sequence of operations, * and therefore the same dirty data creation. * * This fact is used to synchronize the caches for purposes * of propagating the list of candidate entries, by simply * calling this function from all caches whenever some user * specified threshold on dirty data is exceeded. (the * process 0 cache creates the candidate list just before * calling this function). * * 2) Under direct user control -- this operation must be * collective. * * The operations to be managed by this function are as * follows: * * All processes: * * 1) Participate in an opening barrier. * * For the process with mpi rank 0: * * 1) Load the contents of the candidate list * (candidate_slist_ptr) into a buffer, and broadcast that * buffer to all the other caches. Clear the candidate * list in passing. * * If there is a positive number of candidates, proceed with * the following: * * 2) Apply the candidate entry list. * * 3) Particpate in a closing barrier. * * 4) Remove from the dirty list (d_slist_ptr) and from the * flushed and still clean entries list (c_slist_ptr), * all addresses that appeared in the candidate list, as * these entries are now clean. * * * For all processes with mpi rank greater than 0: * * 1) Receive the candidate entry list broadcast * * If there is a positive number of candidates, proceed with * the following: * * 2) Apply the candidate entry list. * * 3) Particpate in a closing barrier. * * Return: Success: non-negative * * Failure: negative * * Programmer: John Mainzer * 3/17/10 * *------------------------------------------------------------------------- */ static herr_t H5AC__propagate_and_apply_candidate_list(H5F_t *f, hid_t dxpl_id) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; haddr_t * candidates_list_ptr = NULL; int mpi_result; int num_candidates = 0; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(f != NULL); cache_ptr = f->shared->cache; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); /* to prevent "messages from the future" we must synchronize all * processes before we write any entries. */ if(MPI_SUCCESS != (mpi_result = MPI_Barrier(aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_result) if(aux_ptr->mpi_rank == 0) { if(H5AC__broadcast_candidate_list(cache_ptr, &num_candidates, &candidates_list_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't broadcast candidate slist.") HDassert(H5SL_count(aux_ptr->candidate_slist_ptr) == 0); } /* end if */ else { if(H5AC__receive_candidate_list(cache_ptr, &num_candidates, &candidates_list_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't receive candidate broadcast.") } /* end else */ if(num_candidates > 0) { herr_t result; /* all processes apply the candidate list. * H5C_apply_candidate_list() handles the details of * distributing the writes across the processes. */ /* Enable writes during this operation */ aux_ptr->write_permitted = TRUE; /* Apply the candidate list */ result = H5C_apply_candidate_list(f, dxpl_id, cache_ptr, num_candidates, candidates_list_ptr, aux_ptr->mpi_rank, aux_ptr->mpi_size); /* Disable writes again */ aux_ptr->write_permitted = FALSE; /* Check for error on the write operation */ if(result < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't apply candidate list.") /* this code exists primarily for the test bed -- it allows us to * enforce posix semantics on the server that pretends to be a * file system in our parallel tests. */ if(aux_ptr->write_done) (aux_ptr->write_done)(); /* to prevent "messages from the past" we must synchronize all * processes again before we go on. */ if(MPI_SUCCESS != (mpi_result = MPI_Barrier(aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_result) /* if this is process zero, tidy up the dirtied, * and flushed and still clean lists. */ if(aux_ptr->mpi_rank == 0) if(H5AC__tidy_cache_0_lists(cache_ptr, num_candidates, candidates_list_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't tidy up process 0 lists.") } /* end if */ /* if it is defined, call the sync point done callback. Note * that this callback is defined purely for testing purposes, * and should be undefined under normal operating circumstances. */ if(aux_ptr->sync_point_done) (aux_ptr->sync_point_done)(num_candidates, candidates_list_ptr); done: if(candidates_list_ptr) candidates_list_ptr = (haddr_t *)H5MM_xfree((void *)candidates_list_ptr); FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__propagate_and_apply_candidate_list() */ /*------------------------------------------------------------------------- * Function: H5AC__propagate_flushed_and_still_clean_entries_list * * Purpose: In PHDF5, if the process 0 only metadata write strategy * is selected, only the metadata cache with mpi rank 0 is * allowed to write to file. All other metadata caches on * processes with rank greater than 0 must retain dirty * entries until they are notified that the entry is now * clean. * * This function is the main routine for handling this * notification proceedure. It must be called * simultaniously on all processes that have the relevant * file open. To this end, it is called only during a * sync point, with a barrier prior to the call. * * Note that any metadata entry writes by process 0 will * occur after the barrier and just before this call. * * Typicaly, calls to this function will be triggered in * one of two ways: * * 1) Dirty byte creation exceeds some user specified value. * * While metadata reads may occur independently, all * operations writing metadata must be collective. Thus * all metadata caches see the same sequence of operations, * and therefore the same dirty data creation. * * This fact is used to synchronize the caches for purposes * of propagating the list of flushed and still clean * entries, by simply calling this function from all * caches whenever some user specified threshold on dirty * data is exceeded. * * 2) Under direct user control -- this operation must be * collective. * * The operations to be managed by this function are as * follows: * * For the process with mpi rank 0: * * 1) Load the contents of the flushed and still clean entries * list (c_slist_ptr) into a buffer, and broadcast that * buffer to all the other caches. * * 2) Clear the flushed and still clean entries list * (c_slist_ptr). * * * For all processes with mpi rank greater than 0: * * 1) Receive the flushed and still clean entries list broadcast * * 2) Mark the specified entries as clean. * * * For all processes: * * 1) Reset the dirtied bytes count to 0. * * Return: Success: non-negative * * Failure: negative * * Programmer: John Mainzer * July 5, 2005 * *------------------------------------------------------------------------- */ static herr_t H5AC__propagate_flushed_and_still_clean_entries_list(H5F_t *f, hid_t dxpl_id) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(f != NULL); cache_ptr = f->shared->cache; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY); if(aux_ptr->mpi_rank == 0) { if(H5AC__broadcast_clean_list(cache_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't broadcast clean slist.") HDassert(H5SL_count(aux_ptr->c_slist_ptr) == 0); } /* end if */ else { if(H5AC__receive_and_apply_clean_list(f, dxpl_id) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't receive and/or process clean slist broadcast.") } /* end else */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__propagate_flushed_and_still_clean_entries_list() */ /*------------------------------------------------------------------------- * * Function: H5AC_receive_haddr_list() * * Purpose: Receive the list of entry addresses from process 0, * and return it in a buffer pointed to by *haddr_buf_ptr_ptr. * Note that the caller must free this buffer if it is * returned. * * This function must only be called by the process with * MPI_rank greater than 0. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: Quincey Koziol, 6/11/2015 * *------------------------------------------------------------------------- */ static herr_t H5AC__receive_haddr_list(MPI_Comm mpi_comm, int *num_entries_ptr, haddr_t **haddr_buf_ptr_ptr) { haddr_t * haddr_buf_ptr = NULL; int mpi_result; int num_entries; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(num_entries_ptr != NULL); HDassert(*num_entries_ptr == 0); HDassert(haddr_buf_ptr_ptr != NULL); HDassert(*haddr_buf_ptr_ptr == NULL); /* First receive the number of entries in the list so that we * can set up a buffer to receive them. If there aren't * any, we are done. */ if(MPI_SUCCESS != (mpi_result = MPI_Bcast(&num_entries, 1, MPI_INT, 0, mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_result) if(num_entries > 0) { size_t buf_size; /* allocate buffers to store the list of entry base addresses in */ buf_size = sizeof(haddr_t) * (size_t)num_entries; if(NULL == (haddr_buf_ptr = (haddr_t *)H5MM_malloc(buf_size))) HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for haddr buffer") /* Now receive the list of candidate entries */ if(MPI_SUCCESS != (mpi_result = MPI_Bcast((void *)haddr_buf_ptr, (int)buf_size, MPI_BYTE, 0, mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_result) } /* end if */ /* finally, pass the number of entries and the buffer pointer * back to the caller. */ *num_entries_ptr = num_entries; *haddr_buf_ptr_ptr = haddr_buf_ptr; done: if(ret_value < 0) if(haddr_buf_ptr) haddr_buf_ptr = (haddr_t *)H5MM_xfree((void *)haddr_buf_ptr); FUNC_LEAVE_NOAPI(ret_value) } /* H5AC_receive_haddr_list() */ /*------------------------------------------------------------------------- * * Function: H5AC__receive_and_apply_clean_list() * * Purpose: Receive the list of cleaned entries from process 0, * and mark the specified entries as clean. * * This function must only be called by the process with * MPI_rank greater than 0. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 7/4/05 * *------------------------------------------------------------------------- */ static herr_t H5AC__receive_and_apply_clean_list(H5F_t *f, hid_t dxpl_id) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; haddr_t * haddr_buf_ptr = NULL; int num_entries = 0; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity check */ HDassert(f != NULL); cache_ptr = f->shared->cache; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->mpi_rank != 0); /* Retrieve the clean list from process 0 */ if(H5AC__receive_haddr_list(aux_ptr->mpi_comm, &num_entries, &haddr_buf_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "can't receive clean list") if(num_entries > 0) /* mark the indicated entries as clean */ if(H5C_mark_entries_as_clean(f, dxpl_id, (int32_t)num_entries, haddr_buf_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't mark entries clean.") /* if it is defined, call the sync point done callback. Note * that this callback is defined purely for testing purposes, * and should be undefined under normal operating circumstances. */ if(aux_ptr->sync_point_done) (aux_ptr->sync_point_done)(num_entries, haddr_buf_ptr); done: if(haddr_buf_ptr) haddr_buf_ptr = (haddr_t *)H5MM_xfree((void *)haddr_buf_ptr); FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__receive_and_apply_clean_list() */ /*------------------------------------------------------------------------- * * Function: H5AC__receive_candidate_list() * * Purpose: Receive the list of candidate entries from process 0, * and return it in a buffer pointed to by *haddr_buf_ptr_ptr. * Note that the caller must free this buffer if it is * returned. * * This function must only be called by the process with * MPI_rank greater than 0. * * Return SUCCEED on success, and FAIL on failure. * * Return: Non-negative on success/Negative on failure. * * Programmer: John Mainzer, 3/17/10 * *------------------------------------------------------------------------- */ static herr_t H5AC__receive_candidate_list(const H5AC_t *cache_ptr, int *num_entries_ptr, haddr_t **haddr_buf_ptr_ptr) { H5AC_aux_t * aux_ptr; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->mpi_rank != 0); HDassert(aux_ptr-> metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); HDassert(num_entries_ptr != NULL); HDassert(*num_entries_ptr == 0); HDassert(haddr_buf_ptr_ptr != NULL); HDassert(*haddr_buf_ptr_ptr == NULL); /* Retrieve the candidate list from process 0 */ if(H5AC__receive_haddr_list(aux_ptr->mpi_comm, num_entries_ptr, haddr_buf_ptr_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "can't receive clean list") done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__receive_candidate_list() */ /*------------------------------------------------------------------------- * Function: H5AC__rsp__dist_md_write__flush * * Purpose: Routine for handling the details of running a sync point * that is triggered by a flush -- which in turn must have been * triggered by either a flush API call or a file close -- * when the distributed metadata write strategy is selected. * * Upon entry, each process generates it own candidate list, * being a sorted list of all dirty metadata entries currently * in the metadata cache. Note that this list must be idendical * across all processes, as all processes see the same stream * of dirty metadata coming in, and use the same lists of * candidate entries at each sync point. (At first glance, this * argument sounds circular, but think of it in the sense of * a recursive proof). * * If this this list is empty, we are done, and the function * returns * * Otherwise, after the sorted list dirty metadata entries is * constructed, each process uses the same algorithm to assign * each entry on the candidate list to exactly one process for * flushing. * * At this point, all processes participate in a barrier to * avoid messages from the past/future bugs. * * Each process then flushes the entries assigned to it, and * marks all other entries on the candidate list as clean. * * Finally, all processes participate in a second barrier to * avoid messages from the past/future bugs. * * At the end of this process, process 0 and only process 0 * must tidy up its lists of dirtied and cleaned entries. * These lists are not used in the distributed metadata write * strategy, but they must be maintained should we shift * to a strategy that uses them. * * Return: Success: non-negative * * Failure: negative * * Programmer: John Mainzer * April 28, 2010 * *------------------------------------------------------------------------- */ static herr_t H5AC__rsp__dist_md_write__flush(H5F_t *f, hid_t dxpl_id) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; haddr_t * haddr_buf_ptr = NULL; int mpi_result; int num_entries = 0; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(f != NULL); cache_ptr = f->shared->cache; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); /* first construct the candidate list -- initially, this will be in the * form of a skip list. We will convert it later. */ if(H5C_construct_candidate_list__clean_cache(cache_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't construct candidate list.") if(H5SL_count(aux_ptr->candidate_slist_ptr) > 0) { herr_t result; /* convert the candidate list into the format we * are used to receiving from process 0. */ if(H5AC__copy_candidate_list_to_buffer(cache_ptr, &num_entries, &haddr_buf_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't construct candidate buffer.") /* initial sync point barrier */ if(MPI_SUCCESS != (mpi_result = MPI_Barrier(aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_result) /* Enable writes during this operation */ aux_ptr->write_permitted = TRUE; /* Apply the candidate list */ result = H5C_apply_candidate_list(f, dxpl_id, cache_ptr, num_entries, haddr_buf_ptr, aux_ptr->mpi_rank, aux_ptr->mpi_size); /* Disable writes again */ aux_ptr->write_permitted = FALSE; /* Check for error on the write operation */ if(result < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't apply candidate list.") /* this code exists primarily for the test bed -- it allows us to * enforce posix semantics on the server that pretends to be a * file system in our parallel tests. */ if(aux_ptr->write_done) (aux_ptr->write_done)(); /* final sync point barrier */ if(MPI_SUCCESS != (mpi_result = MPI_Barrier(aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_result) /* if this is process zero, tidy up the dirtied, * and flushed and still clean lists. */ if(aux_ptr->mpi_rank == 0) if(H5AC__tidy_cache_0_lists(cache_ptr, num_entries, haddr_buf_ptr) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't tidy up process 0 lists.") } /* end if */ /* if it is defined, call the sync point done callback. Note * that this callback is defined purely for testing purposes, * and should be undefined under normal operating circumstances. */ if(aux_ptr->sync_point_done) (aux_ptr->sync_point_done)(num_entries, haddr_buf_ptr); done: if(haddr_buf_ptr) haddr_buf_ptr = (haddr_t *)H5MM_xfree((void *)haddr_buf_ptr); FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__rsp__dist_md_write__flush() */ /*------------------------------------------------------------------------- * Function: H5AC__rsp__dist_md_write__flush_to_min_clean * * Purpose: Routine for handling the details of running a sync point * triggered by the accumulation of dirty metadata (as * opposed to a flush call to the API) when the distributed * metadata write strategy is selected. * * After invocation and initial sanity checking this function * first checks to see if evictions are enabled -- if they * are not, the function does nothing and returns. * * Otherwise, process zero constructs a list of entries to * be flushed in order to bring the process zero cache back * within its min clean requirement. Note that this list * (the candidate list) may be empty. * * Then, all processes participate in a barrier. * * After the barrier, process 0 broadcasts the number of * entries in the candidate list prepared above, and all * other processes receive this number. * * If this number is zero, we are done, and the function * returns without further action. * * Otherwise, process 0 broadcasts the sorted list of * candidate entries, and all other processes receive it. * * Then, each process uses the same algorithm to assign * each entry on the candidate list to exactly one process * for flushing. * * Each process then flushes the entries assigned to it, and * marks all other entries on the candidate list as clean. * * Finally, all processes participate in a second barrier to * avoid messages from the past/future bugs. * * At the end of this process, process 0 and only process 0 * must tidy up its lists of dirtied and cleaned entries. * These lists are not used in the distributed metadata write * strategy, but they must be maintained should we shift * to a strategy that uses them. * * Return: Success: non-negative * * Failure: negative * * Programmer: John Mainzer * April 28, 2010 * *------------------------------------------------------------------------- */ static herr_t H5AC__rsp__dist_md_write__flush_to_min_clean(H5F_t *f, hid_t dxpl_id) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; hbool_t evictions_enabled; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(f != NULL); cache_ptr = f->shared->cache; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); /* Query if evictions are allowed */ if(H5C_get_evictions_enabled((const H5C_t *)cache_ptr, &evictions_enabled) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "H5C_get_evictions_enabled() failed.") if(evictions_enabled) { /* construct candidate list -- process 0 only */ if(aux_ptr->mpi_rank == 0) if(H5AC__construct_candidate_list(cache_ptr, aux_ptr, H5AC_SYNC_POINT_OP__FLUSH_TO_MIN_CLEAN) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't construct candidate list.") /* propagate and apply candidate list -- all processes */ if(H5AC__propagate_and_apply_candidate_list(f, dxpl_id) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't propagate and apply candidate list.") } /* evictions enabled */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__rsp__dist_md_write__flush_to_min_clean() */ /*------------------------------------------------------------------------- * Function: H5AC__rsp__p0_only__flush * * Purpose: Routine for handling the details of running a sync point * that is triggered a flush -- which in turn must have been * triggered by either a flush API call or a file close -- * when the process 0 only metadata write strategy is selected. * * First, all processes participate in a barrier. * * Then process zero flushes all dirty entries, and broadcasts * they number of clean entries (if any) to all the other * caches. * * If this number is zero, we are done. * * Otherwise, process 0 broadcasts the list of cleaned * entries, and all other processes which are part of this * file group receive it, and mark the listed entries as * clean in their caches. * * Since all processes have the same set of dirty * entries at the beginning of the sync point, and all * entries that will be written are written before * process zero broadcasts the number of cleaned entries, * there is no need for a closing barrier. * * Return: Success: non-negative * * Failure: negative * * Programmer: John Mainzer * April 28, 2010 * *------------------------------------------------------------------------- */ static herr_t H5AC__rsp__p0_only__flush(H5F_t *f, hid_t dxpl_id) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; int mpi_result; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(f != NULL); cache_ptr = f->shared->cache; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY); /* to prevent "messages from the future" we must * synchronize all processes before we start the flush. * Hence the following barrier. */ if(MPI_SUCCESS != (mpi_result = MPI_Barrier(aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_result) /* Flush data to disk, from rank 0 process */ if(aux_ptr->mpi_rank == 0) { herr_t result; /* Enable writes during this operation */ aux_ptr->write_permitted = TRUE; /* Flush the cache */ result = H5C_flush_cache(f, dxpl_id, H5AC__NO_FLAGS_SET); /* Disable writes again */ aux_ptr->write_permitted = FALSE; /* Check for error on the write operation */ if(result < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't flush.") /* this code exists primarily for the test bed -- it allows us to * enforce posix semantics on the server that pretends to be a * file system in our parallel tests. */ if(aux_ptr->write_done) (aux_ptr->write_done)(); } /* end if */ /* Propagate cleaned entries to other ranks. */ if(H5AC__propagate_flushed_and_still_clean_entries_list(f, H5AC_dxpl_id) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't propagate clean entries list.") done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__rsp__p0_only__flush() */ /*------------------------------------------------------------------------- * Function: H5AC__rsp__p0_only__flush_to_min_clean * * Purpose: Routine for handling the details of running a sync point * triggered by the accumulation of dirty metadata (as * opposed to a flush call to the API) when the process 0 * only metadata write strategy is selected. * * After invocation and initial sanity checking this function * first checks to see if evictions are enabled -- if they * are not, the function does nothing and returns. * * Otherwise, all processes participate in a barrier. * * After the barrier, if this is process 0, the function * causes the cache to flush sufficient entries to get the * cache back within its minimum clean fraction, and broadcast * the number of entries which have been flushed since * the last sync point, and are still clean. * * If this number is zero, we are done. * * Otherwise, process 0 broadcasts the list of cleaned * entries, and all other processes which are part of this * file group receive it, and mark the listed entries as * clean in their caches. * * Since all processes have the same set of dirty * entries at the beginning of the sync point, and all * entries that will be written are written before * process zero broadcasts the number of cleaned entries, * there is no need for a closing barrier. * * Return: Success: non-negative * * Failure: negative * * Programmer: John Mainzer * April 28, 2010 * *------------------------------------------------------------------------- */ static herr_t H5AC__rsp__p0_only__flush_to_min_clean(H5F_t *f, hid_t dxpl_id) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; hbool_t evictions_enabled; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity checks */ HDassert(f != NULL); cache_ptr = f->shared->cache; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY); /* Query if evictions are allowed */ if(H5C_get_evictions_enabled((const H5C_t *)cache_ptr, &evictions_enabled) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "H5C_get_evictions_enabled() failed.") /* Flush if evictions are allowed -- following call * will cause process 0 to flush to min clean size, * and then propagate the newly clean entries to the * other processes. * * Otherwise, do nothing. */ if(evictions_enabled) { int mpi_result; /* to prevent "messages from the future" we must synchronize all * processes before we start the flush. This synchronization may * already be done -- hence the do_barrier parameter. */ if(MPI_SUCCESS != (mpi_result = MPI_Barrier(aux_ptr->mpi_comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_result) if(0 == aux_ptr->mpi_rank) { herr_t result; /* here, process 0 flushes as many entries as necessary to * comply with the currently specified min clean size. * Note that it is quite possible that no entries will be * flushed. */ /* Enable writes during this operation */ aux_ptr->write_permitted = TRUE; /* Flush the cache */ result = H5C_flush_to_min_clean(f, dxpl_id); /* Disable writes again */ aux_ptr->write_permitted = FALSE; /* Check for error on the write operation */ if(result < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5C_flush_to_min_clean() failed.") /* this call exists primarily for the test code -- it is used * to enforce POSIX semantics on the process used to simulate * reads and writes in t_cache.c. */ if(aux_ptr->write_done) (aux_ptr->write_done)(); } /* end if */ if(H5AC__propagate_flushed_and_still_clean_entries_list(f, dxpl_id) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't propagate clean entries list.") } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__rsp__p0_only__flush_to_min_clean() */ /*------------------------------------------------------------------------- * Function: H5AC__run_sync_point * * Purpose: Top level routine for managing a sync point between all * meta data caches in the parallel case. Since all caches * see the same sequence of dirty metadata, we simply count * bytes of dirty metadata, and run a sync point whenever the * number of dirty bytes of metadata seen since the last * sync point exceeds a threshold that is common across all * processes. We also run sync points in response to * HDF5 API calls triggering either a flush or a file close. * * In earlier versions of PHDF5, only the metadata cache with * mpi rank 0 was allowed to write to file. All other * metadata caches on processes with rank greater than 0 were * required to retain dirty entries until they were notified * that the entry is was clean. * * This function was created to make it easier for us to * experiment with other options, as it is a single point * for the execution of sync points. * * Return: Success: non-negative * * Failure: negative * * Programmer: John Mainzer * March 11, 2010 * *------------------------------------------------------------------------- */ herr_t H5AC__run_sync_point(H5F_t *f, hid_t dxpl_id, int sync_point_op) { H5AC_t * cache_ptr; H5AC_aux_t * aux_ptr; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(f != NULL); cache_ptr = f->shared->cache; HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert((sync_point_op == H5AC_SYNC_POINT_OP__FLUSH_TO_MIN_CLEAN) || (sync_point_op == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED)); #if H5AC_DEBUG_DIRTY_BYTES_CREATION HDfprintf(stdout, "%d:H5AC_propagate...:%u: (u/uu/i/iu/r/ru) = %zu/%u/%zu/%u/%zu/%u\n", aux_ptr->mpi_rank, aux_ptr->dirty_bytes_propagations, aux_ptr->unprotect_dirty_bytes, aux_ptr->unprotect_dirty_bytes_updates, aux_ptr->insert_dirty_bytes, aux_ptr->insert_dirty_bytes_updates, aux_ptr->rename_dirty_bytes, aux_ptr->rename_dirty_bytes_updates); #endif /* H5AC_DEBUG_DIRTY_BYTES_CREATION */ switch(aux_ptr->metadata_write_strategy) { case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: switch(sync_point_op) { case H5AC_SYNC_POINT_OP__FLUSH_TO_MIN_CLEAN: if(H5AC__rsp__p0_only__flush_to_min_clean(f, dxpl_id) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "H5AC__rsp__p0_only__flush_to_min_clean() failed.") break; case H5AC_SYNC_POINT_OP__FLUSH_CACHE: if(H5AC__rsp__p0_only__flush(f, dxpl_id) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "H5AC__rsp__p0_only__flush() failed.") break; default: HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unknown flush op"); break; } /* end switch */ break; case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: switch(sync_point_op) { case H5AC_SYNC_POINT_OP__FLUSH_TO_MIN_CLEAN: if(H5AC__rsp__dist_md_write__flush_to_min_clean(f, dxpl_id) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "H5AC__rsp__dist_md_write__flush_to_min_clean() failed.") break; case H5AC_SYNC_POINT_OP__FLUSH_CACHE: if(H5AC__rsp__dist_md_write__flush(f, dxpl_id) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "H5AC__rsp__dist_md_write__flush() failed.") break; default: HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unknown flush op"); break; } /* end switch */ break; default: HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Unknown metadata write strategy.") break; } /* end switch */ /* reset the dirty bytes count */ aux_ptr->dirty_bytes = 0; #if H5AC_DEBUG_DIRTY_BYTES_CREATION aux_ptr->dirty_bytes_propagations += 1; aux_ptr->unprotect_dirty_bytes = 0; aux_ptr->unprotect_dirty_bytes_updates = 0; aux_ptr->insert_dirty_bytes = 0; aux_ptr->insert_dirty_bytes_updates = 0; aux_ptr->rename_dirty_bytes = 0; aux_ptr->rename_dirty_bytes_updates = 0; #endif /* H5AC_DEBUG_DIRTY_BYTES_CREATION */ done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__run_sync_point() */ /*------------------------------------------------------------------------- * Function: H5AC__tidy_cache_0_lists() * * Purpose: In the distributed metadata write strategy, not all dirty * entries are written by process 0 -- thus we must tidy * up the dirtied, and flushed and still clean lists * maintained by process zero after each sync point. * * This procedure exists to tend to this issue. * * At this point, all entries that process 0 cleared should * have been removed from both the dirty and flushed and * still clean lists, and entries that process 0 has flushed * should have been removed from the dirtied list and added * to the flushed and still clean list. * * However, since the distributed metadata write strategy * doesn't make use of these lists, the objective is simply * to maintain these lists in consistent state that allows * them to be used should the metadata write strategy change * to one that uses these lists. * * Thus for our purposes, all we need to do is remove from * the dirtied and flushed and still clean lists all * references to entries that appear in the candidate list. * * Return: Success: non-negative * * Failure: negative * * Programmer: John Mainzer * 4/20/10 * *------------------------------------------------------------------------- */ static herr_t H5AC__tidy_cache_0_lists(H5AC_t *cache_ptr, int num_candidates, haddr_t *candidates_list_ptr) { H5AC_aux_t * aux_ptr; int i; FUNC_ENTER_STATIC_NOERR /* Sanity checks */ HDassert(cache_ptr != NULL); aux_ptr = H5C_get_aux_ptr(cache_ptr); HDassert(aux_ptr != NULL); HDassert(aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC); HDassert(aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); HDassert(aux_ptr->mpi_rank == 0); HDassert(num_candidates > 0); HDassert(candidates_list_ptr != NULL); /* clean up dirtied and flushed and still clean lists by removing * all entries on the candidate list. Cleared entries should * have been removed from both the dirty and cleaned lists at * this point, flushed entries should have been added to the * cleaned list. However, for this metadata write strategy, * we just want to remove all references to the candidate entries. */ for(i = 0; i < num_candidates; i++) { H5AC_slist_entry_t * d_slist_entry_ptr; H5AC_slist_entry_t * c_slist_entry_ptr; haddr_t addr; addr = candidates_list_ptr[i]; /* addr may be either on the dirtied list, or on the flushed * and still clean list. Remove it. */ if(NULL != (d_slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->d_slist_ptr, (void *)&addr))) d_slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, d_slist_entry_ptr); if(NULL != (c_slist_entry_ptr = (H5AC_slist_entry_t *)H5SL_remove(aux_ptr->c_slist_ptr, (void *)&addr))) c_slist_entry_ptr = H5FL_FREE(H5AC_slist_entry_t, c_slist_entry_ptr); } /* end for */ FUNC_LEAVE_NOAPI(SUCCEED) } /* H5AC__tidy_cache_0_lists() */ /*------------------------------------------------------------------------- * Function: H5AC__flush_entries * * Purpose: Flush the metadata cache associated with the specified file, * only writing from rank 0, but propagating the cleaned entries * to all ranks. * * Return: Non-negative on success/Negative on failure if there was a * request to flush all items and something was protected. * * Programmer: Quincey Koziol * koziol@hdfgroup.org * Aug 22 2009 * *------------------------------------------------------------------------- */ herr_t H5AC__flush_entries(H5F_t *f, hid_t dxpl_id) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE /* Sanity checks */ HDassert(f); HDassert(f->shared->cache); /* Check if we have >1 ranks */ if(H5C_get_aux_ptr(f->shared->cache)) if(H5AC__run_sync_point(f, dxpl_id, H5AC_SYNC_POINT_OP__FLUSH_CACHE) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "Can't run sync point.") done: FUNC_LEAVE_NOAPI(ret_value) } /* H5AC__flush_entries() */ #endif /* H5_HAVE_PARALLEL */