/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /*------------------------------------------------------------------------- * * Created: H5EAdblock.c * Sep 11 2008 * Quincey Koziol * * Purpose: Data block routines for extensible arrays. * *------------------------------------------------------------------------- */ /**********************/ /* Module Declaration */ /**********************/ #include "H5EAmodule.h" /* This source code file is part of the H5EA module */ /***********************/ /* Other Packages Used */ /***********************/ /***********/ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5Eprivate.h" /* Error handling */ #include "H5EApkg.h" /* Extensible Arrays */ #include "H5FLprivate.h" /* Free Lists */ #include "H5MFprivate.h" /* File memory management */ #include "H5VMprivate.h" /* Vectors and arrays */ /****************/ /* Local Macros */ /****************/ /******************/ /* Local Typedefs */ /******************/ /********************/ /* Package Typedefs */ /********************/ /********************/ /* Local Prototypes */ /********************/ /*********************/ /* Package Variables */ /*********************/ /*****************************/ /* Library Private Variables */ /*****************************/ /*******************/ /* Local Variables */ /*******************/ /* Declare a free list to manage the H5EA_dblock_t struct */ H5FL_DEFINE_STATIC(H5EA_dblock_t); /*------------------------------------------------------------------------- * Function: H5EA__dblock_alloc * * Purpose: Allocate extensible array data block * * Return: Non-NULL pointer to data block on success/NULL on failure * * Programmer: Quincey Koziol * Sep 11 2008 * *------------------------------------------------------------------------- */ H5EA_dblock_t * H5EA__dblock_alloc(H5EA_hdr_t *hdr, void *parent, size_t nelmts) { H5EA_dblock_t *dblock = NULL; /* Extensible array data block */ H5EA_dblock_t *ret_value = NULL; FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(hdr); HDassert(parent); HDassert(nelmts > 0); /* Allocate memory for the data block */ if (NULL == (dblock = H5FL_CALLOC(H5EA_dblock_t))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL, "memory allocation failed for extensible array data block") /* Share common array information */ if (H5EA__hdr_incr(hdr) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTINC, NULL, "can't increment reference count on shared array header") dblock->hdr = hdr; /* Set non-zero internal fields */ dblock->parent = parent; dblock->nelmts = nelmts; /* Check if the data block is not going to be paged */ if (nelmts > hdr->dblk_page_nelmts) { /* Set the # of pages in the direct block */ dblock->npages = nelmts / hdr->dblk_page_nelmts; HDassert(nelmts == (dblock->npages * hdr->dblk_page_nelmts)); } /* end if */ else { /* Allocate buffer for elements in data block */ if (NULL == (dblock->elmts = H5EA__hdr_alloc_elmts(hdr, nelmts))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL, "memory allocation failed for data block element buffer") } /* end else */ /* Set the return value */ ret_value = dblock; done: if (!ret_value) if (dblock && H5EA__dblock_dest(dblock) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, NULL, "unable to destroy extensible array data block") FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__dblock_alloc() */ /*------------------------------------------------------------------------- * Function: H5EA__dblock_create * * Purpose: Creates a new extensible array data block in the file * * Return: Valid file address on success/HADDR_UNDEF on failure * * Programmer: Quincey Koziol * Sep 9 2008 * *------------------------------------------------------------------------- */ haddr_t H5EA__dblock_create(H5EA_hdr_t *hdr, void *parent, hbool_t *stats_changed, hsize_t dblk_off, size_t nelmts) { H5EA_dblock_t *dblock = NULL; /* Extensible array data block */ haddr_t dblock_addr; /* Extensible array data block address */ hbool_t inserted = FALSE; /* Whether the header was inserted into cache */ haddr_t ret_value = HADDR_UNDEF; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(hdr); HDassert(stats_changed); HDassert(nelmts > 0); /* Allocate the data block */ if (NULL == (dblock = H5EA__dblock_alloc(hdr, parent, nelmts))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, HADDR_UNDEF, "memory allocation failed for extensible array data block") /* Set size of data block on disk */ dblock->size = H5EA_DBLOCK_SIZE(dblock); /* Set offset of block in array's address space */ dblock->block_off = dblk_off; /* Allocate space for the data block on disk */ if (HADDR_UNDEF == (dblock_addr = H5MF_alloc(hdr->f, H5FD_MEM_EARRAY_DBLOCK, (hsize_t)dblock->size))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, HADDR_UNDEF, "file allocation failed for extensible array data block") dblock->addr = dblock_addr; /* Don't initialize elements if paged */ if (!dblock->npages) /* Clear any elements in data block to fill value */ if ((hdr->cparam.cls->fill)(dblock->elmts, (size_t)dblock->nelmts) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, HADDR_UNDEF, "can't set extensible array data block elements to class's fill value") /* Cache the new extensible array data block */ if (H5AC_insert_entry(hdr->f, H5AC_EARRAY_DBLOCK, dblock_addr, dblock, H5AC__NO_FLAGS_SET) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTINSERT, HADDR_UNDEF, "can't add extensible array data block to cache") inserted = TRUE; /* Add data block as child of 'top' proxy */ if (hdr->top_proxy) { if (H5AC_proxy_entry_add_child(hdr->top_proxy, hdr->f, dblock) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, HADDR_UNDEF, "unable to add extensible array entry as child of array proxy") dblock->top_proxy = hdr->top_proxy; } /* end if */ /* Update extensible array data block statistics */ hdr->stats.stored.ndata_blks++; hdr->stats.stored.data_blk_size += dblock->size; /* Increment count of elements "realized" */ hdr->stats.stored.nelmts += nelmts; /* Mark the statistics as changed */ *stats_changed = TRUE; /* Set address of data block to return */ ret_value = dblock_addr; done: if (!H5F_addr_defined(ret_value)) if (dblock) { /* Remove from cache, if inserted */ if (inserted) if (H5AC_remove_entry(dblock) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTREMOVE, HADDR_UNDEF, "unable to remove extensible array data block from cache") /* Release data block's disk space */ if (H5F_addr_defined(dblock->addr) && H5MF_xfree(hdr->f, H5FD_MEM_EARRAY_DBLOCK, dblock->addr, (hsize_t)dblock->size) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, HADDR_UNDEF, "unable to release extensible array data block") /* Destroy data block */ if (H5EA__dblock_dest(dblock) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, HADDR_UNDEF, "unable to destroy extensible array data block") } /* end if */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__dblock_create() */ /*------------------------------------------------------------------------- * Function: H5EA__dblock_sblk_idx * * Purpose: Compute the index of the super block where the element is * located. * * Return: Super block index on success/Can't fail * * Programmer: Quincey Koziol * Sep 11 2008 * *------------------------------------------------------------------------- */ unsigned H5EA__dblock_sblk_idx(const H5EA_hdr_t *hdr, hsize_t idx) { unsigned sblk_idx = 0; /* Which superblock does this index fall in? */ FUNC_ENTER_PACKAGE_NOERR /* Sanity check */ HDassert(hdr); HDassert(idx >= hdr->cparam.idx_blk_elmts); /* Adjust index for elements in index block */ idx -= hdr->cparam.idx_blk_elmts; /* Determine the superblock information for the index */ H5_CHECK_OVERFLOW(idx, /*From:*/ hsize_t, /*To:*/ uint64_t); sblk_idx = H5VM_log2_gen((uint64_t)((idx / hdr->cparam.data_blk_min_elmts) + 1)); FUNC_LEAVE_NOAPI(sblk_idx) } /* end H5EA__dblock_sblk_idx() */ /*------------------------------------------------------------------------- * Function: H5EA__dblock_protect * * Purpose: Convenience wrapper around protecting extensible array data block * * Return: Non-NULL pointer to data block on success/NULL on failure * * Programmer: Quincey Koziol * Sep 18 2008 * *------------------------------------------------------------------------- */ H5EA_dblock_t * H5EA__dblock_protect(H5EA_hdr_t *hdr, void *parent, haddr_t dblk_addr, size_t dblk_nelmts, unsigned flags) { H5EA_dblock_t *dblock; /* Extensible array data block */ H5EA_dblock_cache_ud_t udata; /* Information needed for loading data block */ H5EA_dblock_t *ret_value = NULL; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(hdr); HDassert(H5F_addr_defined(dblk_addr)); HDassert(dblk_nelmts); /* only the H5AC__READ_ONLY_FLAG may be set */ HDassert((flags & (unsigned)(~H5AC__READ_ONLY_FLAG)) == 0); /* Set up user data */ udata.hdr = hdr; udata.parent = parent; udata.nelmts = dblk_nelmts; udata.dblk_addr = dblk_addr; /* Protect the data block */ if (NULL == (dblock = (H5EA_dblock_t *)H5AC_protect(hdr->f, H5AC_EARRAY_DBLOCK, dblk_addr, &udata, flags))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTPROTECT, NULL, "unable to protect extensible array data block, address = %llu", (unsigned long long)dblk_addr) /* Create top proxy, if it doesn't exist */ if (hdr->top_proxy && NULL == dblock->top_proxy) { /* Add data block as child of 'top' proxy */ if (H5AC_proxy_entry_add_child(hdr->top_proxy, hdr->f, dblock) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, NULL, "unable to add extensible array entry as child of array proxy") dblock->top_proxy = hdr->top_proxy; } /* Set return value */ ret_value = dblock; done: /* Clean up on error */ if (!ret_value) { /* Release the data block, if it was protected */ if (dblock && H5AC_unprotect(hdr->f, H5AC_EARRAY_DBLOCK, dblock->addr, dblock, H5AC__NO_FLAGS_SET) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, NULL, "unable to unprotect extensible array data block, address = %llu", (unsigned long long)dblock->addr) } FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__dblock_protect() */ /*------------------------------------------------------------------------- * Function: H5EA__dblock_unprotect * * Purpose: Convenience wrapper around unprotecting extensible array data block * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Sep 11 2008 * *------------------------------------------------------------------------- */ herr_t H5EA__dblock_unprotect(H5EA_dblock_t *dblock, unsigned cache_flags) { herr_t ret_value = SUCCEED; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(dblock); /* Unprotect the data block */ if (H5AC_unprotect(dblock->hdr->f, H5AC_EARRAY_DBLOCK, dblock->addr, dblock, cache_flags) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, FAIL, "unable to unprotect extensible array data block, address = %llu", (unsigned long long)dblock->addr) done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__dblock_unprotect() */ /*------------------------------------------------------------------------- * Function: H5EA__dblock_delete * * Purpose: Delete a data block * * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Sep 22 2008 * *------------------------------------------------------------------------- */ herr_t H5EA__dblock_delete(H5EA_hdr_t *hdr, void *parent, haddr_t dblk_addr, size_t dblk_nelmts) { H5EA_dblock_t *dblock = NULL; /* Pointer to data block */ herr_t ret_value = SUCCEED; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(hdr); HDassert(parent); HDassert(H5F_addr_defined(dblk_addr)); HDassert(dblk_nelmts > 0); /* Protect data block */ if (NULL == (dblock = H5EA__dblock_protect(hdr, parent, dblk_addr, dblk_nelmts, H5AC__NO_FLAGS_SET))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTPROTECT, FAIL, "unable to protect extensible array data block, address = %llu", (unsigned long long)dblk_addr) /* Check if this is a paged data block */ if (dblk_nelmts > hdr->dblk_page_nelmts) { size_t npages = dblk_nelmts / hdr->dblk_page_nelmts; /* Number of pages in data block */ haddr_t dblk_page_addr; /* Address of each data block page */ size_t dblk_page_size; /* Size of each data block page */ size_t u; /* Local index variable */ /* Set up initial state */ dblk_page_addr = dblk_addr + H5EA_DBLOCK_PREFIX_SIZE(dblock); dblk_page_size = (hdr->dblk_page_nelmts * hdr->cparam.raw_elmt_size) + H5EA_SIZEOF_CHKSUM; /* Iterate over pages in data block */ for (u = 0; u < npages; u++) { /* Evict the data block page from the metadata cache */ /* (OK to call if it doesn't exist in the cache) */ if (H5AC_expunge_entry(hdr->f, H5AC_EARRAY_DBLK_PAGE, dblk_page_addr, H5AC__NO_FLAGS_SET) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTEXPUNGE, FAIL, "unable to remove array data block page from metadata cache") /* Advance to next page address */ dblk_page_addr += dblk_page_size; } /* end for */ } /* end if */ done: /* Finished deleting data block in metadata cache */ if (dblock && H5EA__dblock_unprotect(dblock, H5AC__DIRTIED_FLAG | H5AC__DELETED_FLAG | H5AC__FREE_FILE_SPACE_FLAG) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, FAIL, "unable to release extensible array data block") FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__dblock_delete() */ /*------------------------------------------------------------------------- * Function: H5EA__dblock_dest * * Purpose: Destroys an extensible array data block in memory. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Sep 11 2008 * *------------------------------------------------------------------------- */ herr_t H5EA__dblock_dest(H5EA_dblock_t *dblock) { herr_t ret_value = SUCCEED; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(dblock); HDassert(!dblock->has_hdr_depend); /* Check if shared header field has been initialized */ if (dblock->hdr) { /* Check if we've got elements in the data block */ if (dblock->elmts && !dblock->npages) { /* Free buffer for data block elements */ HDassert(dblock->nelmts > 0); if (H5EA__hdr_free_elmts(dblock->hdr, dblock->nelmts, dblock->elmts) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTFREE, FAIL, "unable to free extensible array data block element buffer") dblock->elmts = NULL; dblock->nelmts = 0; } /* end if */ /* Decrement reference count on shared info */ if (H5EA__hdr_decr(dblock->hdr) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTDEC, FAIL, "can't decrement reference count on shared array header") dblock->hdr = NULL; } /* end if */ /* Sanity check */ HDassert(NULL == dblock->top_proxy); /* Free the data block itself */ dblock = H5FL_FREE(H5EA_dblock_t, dblock); done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__dblock_dest() */