/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /*------------------------------------------------------------------------- * * Created: H5EAiblock.c * Sep 9 2008 * Quincey Koziol * * Purpose: Index block routines for extensible arrays. * *------------------------------------------------------------------------- */ /**********************/ /* Module Declaration */ /**********************/ #include "H5EAmodule.h" /* This source code file is part of the H5EA module */ /***********************/ /* Other Packages Used */ /***********************/ /***********/ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5Eprivate.h" /* Error handling */ #include "H5EApkg.h" /* Extensible Arrays */ #include "H5FLprivate.h" /* Free Lists */ #include "H5MFprivate.h" /* File memory management */ #include "H5VMprivate.h" /* Vectors and arrays */ /****************/ /* Local Macros */ /****************/ /******************/ /* Local Typedefs */ /******************/ /********************/ /* Package Typedefs */ /********************/ /********************/ /* Local Prototypes */ /********************/ /*********************/ /* Package Variables */ /*********************/ /*****************************/ /* Library Private Variables */ /*****************************/ /*******************/ /* Local Variables */ /*******************/ /* Declare a free list to manage the H5EA_iblock_t struct */ H5FL_DEFINE_STATIC(H5EA_iblock_t); /* Declare a free list to manage the index block elements */ H5FL_BLK_DEFINE_STATIC(idx_blk_elmt_buf); /* Declare a free list to manage the haddr_t sequence information */ H5FL_SEQ_DEFINE_STATIC(haddr_t); /*------------------------------------------------------------------------- * Function: H5EA__iblock_alloc * * Purpose: Allocate extensible array index block * * Return: Non-NULL pointer to index block on success/NULL on failure * * Programmer: Quincey Koziol * Sep 9 2008 * *------------------------------------------------------------------------- */ H5EA_iblock_t * H5EA__iblock_alloc(H5EA_hdr_t *hdr) { H5EA_iblock_t *iblock = NULL; /* Extensible array index block */ H5EA_iblock_t *ret_value = NULL; FUNC_ENTER_PACKAGE /* Check arguments */ HDassert(hdr); /* Allocate memory for the index block */ if (NULL == (iblock = H5FL_CALLOC(H5EA_iblock_t))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL, "memory allocation failed for extensible array index block") /* Share common array information */ if (H5EA__hdr_incr(hdr) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTINC, NULL, "can't increment reference count on shared array header") iblock->hdr = hdr; /* Set non-zero internal fields */ iblock->addr = HADDR_UNDEF; /* Compute information */ iblock->nsblks = H5EA_SBLK_FIRST_IDX(hdr->cparam.sup_blk_min_data_ptrs); iblock->ndblk_addrs = 2 * ((size_t)hdr->cparam.sup_blk_min_data_ptrs - 1); iblock->nsblk_addrs = hdr->nsblks - iblock->nsblks; /* Allocate buffer for elements in index block */ if (hdr->cparam.idx_blk_elmts > 0) if (NULL == (iblock->elmts = H5FL_BLK_MALLOC( idx_blk_elmt_buf, (size_t)(hdr->cparam.idx_blk_elmts * hdr->cparam.cls->nat_elmt_size)))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL, "memory allocation failed for index block data element buffer") /* Allocate buffer for data block addresses in index block */ if (iblock->ndblk_addrs > 0) if (NULL == (iblock->dblk_addrs = H5FL_SEQ_MALLOC(haddr_t, iblock->ndblk_addrs))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL, "memory allocation failed for index block data block addresses") /* Allocate buffer for super block addresses in index block */ if (iblock->nsblk_addrs > 0) if (NULL == (iblock->sblk_addrs = H5FL_SEQ_MALLOC(haddr_t, iblock->nsblk_addrs))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, NULL, "memory allocation failed for index block super block addresses") /* Set the return value */ ret_value = iblock; done: if (!ret_value) if (iblock && H5EA__iblock_dest(iblock) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, NULL, "unable to destroy extensible array index block") FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__iblock_alloc() */ /*------------------------------------------------------------------------- * Function: H5EA__iblock_create * * Purpose: Creates a new extensible array index block in the file * * Return: Valid file address on success/HADDR_UNDEF on failure * * Programmer: Quincey Koziol * Sep 9 2008 * *------------------------------------------------------------------------- */ haddr_t H5EA__iblock_create(H5EA_hdr_t *hdr, hbool_t *stats_changed) { H5EA_iblock_t *iblock = NULL; /* Extensible array index block */ haddr_t iblock_addr; /* Extensible array index block address */ hbool_t inserted = FALSE; /* Whether the header was inserted into cache */ haddr_t ret_value = HADDR_UNDEF; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(hdr); HDassert(stats_changed); /* Allocate the index block */ if (NULL == (iblock = H5EA__iblock_alloc(hdr))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, HADDR_UNDEF, "memory allocation failed for extensible array index block") /* Set size of index block on disk */ iblock->size = H5EA_IBLOCK_SIZE(iblock); /* Allocate space for the index block on disk */ if (HADDR_UNDEF == (iblock_addr = H5MF_alloc(hdr->f, H5FD_MEM_EARRAY_IBLOCK, (hsize_t)iblock->size))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTALLOC, HADDR_UNDEF, "file allocation failed for extensible array index block") iblock->addr = iblock_addr; /* Clear any elements in index block to fill value */ if (hdr->cparam.idx_blk_elmts > 0) { /* Call the class's 'fill' callback */ if ((hdr->cparam.cls->fill)(iblock->elmts, (size_t)hdr->cparam.idx_blk_elmts) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, HADDR_UNDEF, "can't set extensible array index block elements to class's fill value") } /* end if */ /* Reset any data block addresses in the index block */ if (iblock->ndblk_addrs > 0) { haddr_t tmp_addr = HADDR_UNDEF; /* Address value to fill data block addresses with */ /* Set all the data block addresses to "undefined" address value */ H5VM_array_fill(iblock->dblk_addrs, &tmp_addr, sizeof(haddr_t), iblock->ndblk_addrs); } /* end if */ /* Reset any super block addresses in the index block */ if (iblock->nsblk_addrs > 0) { haddr_t tmp_addr = HADDR_UNDEF; /* Address value to fill super block addresses with */ /* Set all the super block addresses to "undefined" address value */ H5VM_array_fill(iblock->sblk_addrs, &tmp_addr, sizeof(haddr_t), iblock->nsblk_addrs); } /* end if */ /* Cache the new extensible array index block */ if (H5AC_insert_entry(hdr->f, H5AC_EARRAY_IBLOCK, iblock_addr, iblock, H5AC__NO_FLAGS_SET) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTINSERT, HADDR_UNDEF, "can't add extensible array index block to cache") inserted = TRUE; /* Add index block as child of 'top' proxy */ if (hdr->top_proxy) { if (H5AC_proxy_entry_add_child(hdr->top_proxy, hdr->f, iblock) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, HADDR_UNDEF, "unable to add extensible array entry as child of array proxy") iblock->top_proxy = hdr->top_proxy; } /* end if */ /* Update extensible array index block statistics */ HDassert(0 == hdr->stats.computed.nindex_blks); HDassert(0 == hdr->stats.computed.index_blk_size); hdr->stats.computed.nindex_blks = 1; hdr->stats.computed.index_blk_size = iblock->size; /* Increment count of elements "realized" */ hdr->stats.stored.nelmts += hdr->cparam.idx_blk_elmts; /* Mark the statistics as changed */ *stats_changed = TRUE; /* Set address of index block to return */ ret_value = iblock_addr; done: if (!H5F_addr_defined(ret_value)) if (iblock) { /* Remove from cache, if inserted */ if (inserted) if (H5AC_remove_entry(iblock) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTREMOVE, HADDR_UNDEF, "unable to remove extensible array index block from cache") /* Release index block's disk space */ if (H5F_addr_defined(iblock->addr) && H5MF_xfree(hdr->f, H5FD_MEM_EARRAY_IBLOCK, iblock->addr, (hsize_t)iblock->size) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, HADDR_UNDEF, "unable to release file space for extensible array index block") /* Destroy index block */ if (H5EA__iblock_dest(iblock) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTFREE, HADDR_UNDEF, "unable to destroy extensible array index block") } /* end if */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__iblock_create() */ /*------------------------------------------------------------------------- * Function: H5EA__iblock_protect * * Purpose: Convenience wrapper around protecting extensible array index block * * Return: Non-NULL pointer to index block on success/NULL on failure * * Programmer: Quincey Koziol * Sep 9 2008 * *------------------------------------------------------------------------- */ H5EA_iblock_t * H5EA__iblock_protect(H5EA_hdr_t *hdr, unsigned flags) { H5EA_iblock_t *iblock = NULL; /* Pointer to index block */ H5EA_iblock_t *ret_value = NULL; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(hdr); /* only the H5AC__READ_ONLY_FLAG may be set */ HDassert((flags & (unsigned)(~H5AC__READ_ONLY_FLAG)) == 0); /* Protect the index block */ if (NULL == (iblock = (H5EA_iblock_t *)H5AC_protect(hdr->f, H5AC_EARRAY_IBLOCK, hdr->idx_blk_addr, hdr, flags))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTPROTECT, NULL, "unable to protect extensible array index block, address = %llu", (unsigned long long)hdr->idx_blk_addr) /* Create top proxy, if it doesn't exist */ if (hdr->top_proxy && NULL == iblock->top_proxy) { /* Add index block as child of 'top' proxy */ if (H5AC_proxy_entry_add_child(hdr->top_proxy, hdr->f, iblock) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTSET, NULL, "unable to add extensible array entry as child of array proxy") iblock->top_proxy = hdr->top_proxy; } /* end if */ /* Set return value */ ret_value = iblock; done: /* Clean up on error */ if (!ret_value) { /* Release the index block, if it was protected */ if (iblock && H5AC_unprotect(hdr->f, H5AC_EARRAY_IBLOCK, iblock->addr, iblock, H5AC__NO_FLAGS_SET) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, NULL, "unable to unprotect extensible array index block, address = %llu", (unsigned long long)iblock->addr) } /* end if */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__iblock_protect() */ /*------------------------------------------------------------------------- * Function: H5EA__iblock_unprotect * * Purpose: Convenience wrapper around unprotecting extensible array index block * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Sep 9 2008 * *------------------------------------------------------------------------- */ herr_t H5EA__iblock_unprotect(H5EA_iblock_t *iblock, unsigned cache_flags) { herr_t ret_value = SUCCEED; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(iblock); /* Unprotect the index block */ if (H5AC_unprotect(iblock->hdr->f, H5AC_EARRAY_IBLOCK, iblock->addr, iblock, cache_flags) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, FAIL, "unable to unprotect extensible array index block, address = %llu", (unsigned long long)iblock->addr) done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__iblock_unprotect() */ /*------------------------------------------------------------------------- * Function: H5EA__iblock_delete * * Purpose: Delete index block * * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Sep 9 2008 * *------------------------------------------------------------------------- */ herr_t H5EA__iblock_delete(H5EA_hdr_t *hdr) { H5EA_iblock_t *iblock = NULL; /* Pointer to index block */ herr_t ret_value = SUCCEED; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(hdr); HDassert(H5F_addr_defined(hdr->idx_blk_addr)); /* Protect index block */ if (NULL == (iblock = H5EA__iblock_protect(hdr, H5AC__NO_FLAGS_SET))) HGOTO_ERROR(H5E_EARRAY, H5E_CANTPROTECT, FAIL, "unable to protect extensible array index block, address = %llu", (unsigned long long)hdr->idx_blk_addr) /* Check for index block having data block pointers */ if (iblock->ndblk_addrs > 0) { unsigned sblk_idx; /* Current super block index */ unsigned dblk_idx; /* Current data block index w/in super block */ size_t u; /* Local index variable */ /* Iterate over data blocks */ sblk_idx = dblk_idx = 0; for (u = 0; u < iblock->ndblk_addrs; u++) { /* Check for data block existing */ if (H5F_addr_defined(iblock->dblk_addrs[u])) { /* Delete data block */ if (H5EA__dblock_delete(hdr, iblock, iblock->dblk_addrs[u], hdr->sblk_info[sblk_idx].dblk_nelmts) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTDELETE, FAIL, "unable to delete extensible array data block") iblock->dblk_addrs[u] = HADDR_UNDEF; } /* end if */ /* Advance to next data block w/in super block */ dblk_idx++; /* Check for moving to next super block */ if (dblk_idx >= hdr->sblk_info[sblk_idx].ndblks) { sblk_idx++; dblk_idx = 0; } /* end if */ } /* end for */ } /* end if */ /* Check for index block having data block pointers (not yet) */ if (iblock->nsblk_addrs > 0) { size_t u; /* Local index variable */ /* Iterate over super blocks */ for (u = 0; u < iblock->nsblk_addrs; u++) { /* Check for data block existing */ if (H5F_addr_defined(iblock->sblk_addrs[u])) { /* Delete super block */ if (H5EA__sblock_delete(hdr, iblock, iblock->sblk_addrs[u], (unsigned)(u + iblock->nsblks)) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTDELETE, FAIL, "unable to delete extensible array super block") iblock->sblk_addrs[u] = HADDR_UNDEF; } } } done: /* Finished deleting index block in metadata cache */ if (iblock && H5EA__iblock_unprotect(iblock, H5AC__DIRTIED_FLAG | H5AC__DELETED_FLAG | H5AC__FREE_FILE_SPACE_FLAG) < 0) HDONE_ERROR(H5E_EARRAY, H5E_CANTUNPROTECT, FAIL, "unable to release extensible array index block") FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__iblock_delete() */ /*------------------------------------------------------------------------- * Function: H5EA__iblock_dest * * Purpose: Destroys an extensible array index block in memory. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Sep 11 2008 * *------------------------------------------------------------------------- */ herr_t H5EA__iblock_dest(H5EA_iblock_t *iblock) { herr_t ret_value = SUCCEED; FUNC_ENTER_PACKAGE /* Sanity check */ HDassert(iblock); /* Check if shared header field has been initialized */ if (iblock->hdr) { /* Check if we've got elements in the index block */ if (iblock->elmts) { /* Free buffer for index block elements */ HDassert(iblock->hdr->cparam.idx_blk_elmts > 0); iblock->elmts = H5FL_BLK_FREE(idx_blk_elmt_buf, iblock->elmts); } /* end if */ /* Check if we've got data block addresses in the index block */ if (iblock->dblk_addrs) { /* Free buffer for index block data block addresses */ HDassert(iblock->ndblk_addrs > 0); iblock->dblk_addrs = H5FL_SEQ_FREE(haddr_t, iblock->dblk_addrs); iblock->ndblk_addrs = 0; } /* end if */ /* Check if we've got super block addresses in the index block */ if (iblock->sblk_addrs) { /* Free buffer for index block super block addresses */ HDassert(iblock->nsblk_addrs > 0); iblock->sblk_addrs = H5FL_SEQ_FREE(haddr_t, iblock->sblk_addrs); iblock->nsblk_addrs = 0; } /* end if */ /* Decrement reference count on shared info */ if (H5EA__hdr_decr(iblock->hdr) < 0) HGOTO_ERROR(H5E_EARRAY, H5E_CANTDEC, FAIL, "can't decrement reference count on shared array header") iblock->hdr = NULL; } /* end if */ /* Sanity check */ HDassert(NULL == iblock->top_proxy); /* Free the index block itself */ iblock = H5FL_FREE(H5EA_iblock_t, iblock); done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5EA__iblock_dest() */