/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #define H5F_PACKAGE /*suppress error about including H5Fpkg */ /* Interface initialization */ #define H5_INTERFACE_INIT_FUNC H5F_init_interface /* Pablo information */ /* (Put before include files to avoid problems with inline functions) */ #define PABLO_MASK H5F_mask /* Packages needed by this file... */ #include "H5private.h" /* Generic Functions */ #include "H5Aprivate.h" /* Attributes */ #include "H5ACprivate.h" /* Metadata cache */ #include "H5Dprivate.h" /* Datasets */ #include "H5Eprivate.h" /* Error handling */ #include "H5Fpkg.h" /* File access */ #include "H5FDprivate.h" /* File drivers */ #include "H5FLprivate.h" /* Free lists */ #include "H5FPprivate.h" /* Flexible parallel */ #include "H5Iprivate.h" /* IDs */ #include "H5Gprivate.h" /* Groups */ #include "H5MMprivate.h" /* Memory management */ #include "H5Pprivate.h" /* Property lists */ #include "H5Tprivate.h" /* Datatypes */ /* Predefined file drivers */ #include "H5FDcore.h" /*temporary in-memory files */ #include "H5FDfamily.h" /*family of files */ #include "H5FDgass.h" /*GASS I/O */ #include "H5FDlog.h" /* sec2 driver with logging, for debugging */ #include "H5FDmpi.h" /* MPI-based file drivers */ #include "H5FDmulti.h" /*multiple files partitioned by mem usage */ #include "H5FDsec2.h" /*Posix unbuffered I/O */ #include "H5FDsrb.h" /*SRB I/O */ #include "H5FDstdio.h" /* Standard C buffered I/O */ #include "H5FDstream.h" /*in-memory files streamed via sockets */ /* Struct only used by functions H5F_get_objects and H5F_get_objects_cb */ typedef struct H5F_olist_t { H5I_type_t obj_type; /* Type of object to look for */ hid_t *obj_id_list; /* Pointer to the list of open IDs to return */ unsigned *obj_id_count; /* Number of open IDs */ H5F_file_t *shared; /* Pointer to file to look inside */ unsigned list_index; /* Current index in open ID array */ int max_index; /* Maximum # of IDs to put into array */ } H5F_olist_t; /* PRIVATE PROTOTYPES */ static H5F_t *H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id, hid_t dxpl_id); static herr_t H5F_close(H5F_t *f); #ifdef NOT_YET static herr_t H5F_flush_all(hbool_t invalidate); static int H5F_flush_all_cb(void *f, hid_t fid, void *_invalidate); #endif /* NOT_YET */ static hsize_t H5F_init_superblock(H5F_t *f, hid_t dxpl_id); static herr_t H5F_write_superblock(H5F_t *f, hid_t dxpl_id, uint8_t *buf); static herr_t H5F_read_superblock(H5F_t *f, hid_t dxpl_id, H5G_entry_t *root_ent, haddr_t addr, uint8_t *buf, size_t buf_size); static H5F_t *H5F_new(H5F_file_t *shared, hid_t fcpl_id, hid_t fapl_id); static herr_t H5F_dest(H5F_t *f, hid_t dxpl_id); static herr_t H5F_flush(H5F_t *f, hid_t dxpl_id, H5F_scope_t scope, unsigned flags); static haddr_t H5F_locate_signature(H5FD_t *file, hid_t dxpl_id); static int H5F_get_objects(const H5F_t *f, unsigned types, int max_objs, hid_t *obj_id_list); static int H5F_get_objects_cb(void *obj_ptr, hid_t obj_id, void *key); static herr_t H5F_get_vfd_handle(const H5F_t *file, hid_t fapl, void** file_handle); /* Declare a free list to manage the H5F_t struct */ H5FL_DEFINE_STATIC(H5F_t); /* Declare a free list to manage the H5F_file_t struct */ H5FL_DEFINE_STATIC(H5F_file_t); /* Declare the external free list for the H5G_t struct */ H5FL_EXTERN(H5G_t); /*------------------------------------------------------------------------- * Function: H5F_init * * Purpose: Initialize the interface from some other layer. * * Return: Success: non-negative * * Failure: negative * * Programmer: Robb Matzke * Wednesday, December 16, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5F_init(void) { herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5F_init, FAIL) /* FUNC_ENTER() does all the work */ done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_init_interface * * Purpose: Initialize interface-specific information. * * Return: Success: non-negative * * Failure: negative * * Programmer: Robb Matzke * Friday, November 20, 1998 * * Modifications: * Robb Matzke, 4 Aug 1997 * Changed pablo mask from H5_mask to H5F_mask for the FUNC_LEAVE call. * It was already H5F_mask for the PABLO_TRACE_ON call. * * Kim Yates, 1998-08-16 * Added .disp, .btype, .ftype to H5F_access_t. * * Robb Matzke, 1999-02-19 * Added initialization for the H5I_FILE_CLOSING ID group. * * Raymond Lu, April 10, 2000 * Put SRB into the 'Register predefined file drivers' list. * * Thomas Radke, 2000-09-12 * Put Stream VFD into the 'Register predefined file drivers' list. * * Raymond Lu, 2001-10-14 * Change File creation property list to generic property list mechanism. *------------------------------------------------------------------------- */ static herr_t H5F_init_interface(void) { size_t nprops; /* Number of properties */ herr_t ret_value = SUCCEED; /* File creation property class variables. In sequence, they are * - File create property list class to modify * - Default value for size of file user block * - Default value for 1/2 rank for symbol table leaf nodes * - Default value for 1/2 rank for btree internal nodes * - Default value for byte number in an address * - Default value for byte number for object size * - Default value for version number of superblock * - Default value for free-space version number * - Default value for object directory version number * - Default value for share-header format version */ H5P_genclass_t *crt_pclass; hsize_t userblock_size = H5F_CRT_USER_BLOCK_DEF; unsigned sym_leaf_k = H5F_CRT_SYM_LEAF_DEF; unsigned btree_k[H5B_NUM_BTREE_ID] = H5F_CRT_BTREE_RANK_DEF; size_t sizeof_addr = H5F_CRT_ADDR_BYTE_NUM_DEF; size_t sizeof_size = H5F_CRT_OBJ_BYTE_NUM_DEF; unsigned superblock_ver = H5F_CRT_SUPER_VERS_DEF; unsigned freespace_ver = H5F_CRT_FREESPACE_VERS_DEF; unsigned objectdir_ver = H5F_CRT_OBJ_DIR_VERS_DEF; unsigned sharedheader_ver = H5F_CRT_SHARE_HEAD_VERS_DEF; /* File access property class variables. In sequence, they are * - File access property class to modify * - Size of meta data cache(elements) * - Size of raw data chunk cache(elements) * - Size of raw data chunk cache(bytes) * - Preemption for reading chunks * - Threshold for alignment * - Alignment * - Minimum metadata allocation block size * - Maximum sieve buffer size * - Garbage-collect reference * - File driver ID * - File driver info */ H5P_genclass_t *acs_pclass; int mdc_nelmts = H5F_ACS_META_CACHE_SIZE_DEF; size_t rdcc_nelmts = H5F_ACS_DATA_CACHE_ELMT_SIZE_DEF; size_t rdcc_nbytes = H5F_ACS_DATA_CACHE_BYTE_SIZE_DEF; double rdcc_w0 = H5F_ACS_PREEMPT_READ_CHUNKS_DEF; hsize_t threshold = H5F_ACS_ALIGN_THRHD_DEF; hsize_t alignment = H5F_ACS_ALIGN_DEF; hsize_t meta_block_size = H5F_ACS_META_BLOCK_SIZE_DEF; size_t sieve_buf_size = H5F_ACS_SIEVE_BUF_SIZE_DEF; hsize_t sdata_block_size = H5F_ACS_SDATA_BLOCK_SIZE_DEF; unsigned gc_ref = H5F_ACS_GARBG_COLCT_REF_DEF; hid_t driver_id = H5F_ACS_FILE_DRV_ID_DEF; void *driver_info = H5F_ACS_FILE_DRV_INFO_DEF; H5F_close_degree_t close_degree = H5F_CLOSE_DEGREE_DEF; hsize_t family_offset = H5F_ACS_FAMILY_OFFSET_DEF; H5FD_mem_t mem_type = H5F_ACS_MULTI_TYPE_DEF; /* File mount property class variable. * - Mount property class to modify * - whether absolute symlinks is local to file */ H5P_genclass_t *mnt_pclass; hbool_t local = H5F_MNT_SYM_LOCAL_DEF; FUNC_ENTER_NOAPI_NOINIT(H5F_init_interface) /* * Initialize the atom group for the file IDs. There are two groups: * the H5I_FILE group contains all the ID's for files which are currently * open at the public API level while the H5I_FILE_CLOSING group contains * ID's for files for which the application has called H5Fclose() but * which are pending completion because there are object headers still * open within the file. */ if (H5I_register_type(H5I_FILE, H5I_FILEID_HASHSIZE, 0, (H5I_free_t)H5F_close)<0 || H5I_register_type(H5I_FILE_CLOSING, H5I_FILEID_HASHSIZE, 0, (H5I_free_t)H5F_close)<0) HGOTO_ERROR (H5E_FILE, H5E_CANTINIT, FAIL, "unable to initialize interface") /* ========== File Creation Property Class Initialization ============*/ assert(H5P_CLS_FILE_CREATE_g!=-1); /* Get the pointer to file creation class */ if(NULL == (crt_pclass = H5I_object(H5P_CLS_FILE_CREATE_g))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list class") /* Get the number of properties in the class */ if(H5P_get_nprops_pclass(crt_pclass,&nprops)<0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't query number of properties") /* Assume that if there are properties in the class, they are the default ones */ if(nprops==0) { /* Register the user block size */ if(H5P_register(crt_pclass,H5F_CRT_USER_BLOCK_NAME,H5F_CRT_USER_BLOCK_SIZE, &userblock_size,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the 1/2 rank for symbol table leaf nodes */ if(H5P_register(crt_pclass,H5F_CRT_SYM_LEAF_NAME,H5F_CRT_SYM_LEAF_SIZE, &sym_leaf_k,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the 1/2 rank for btree internal nodes */ if(H5P_register(crt_pclass,H5F_CRT_BTREE_RANK_NAME,H5F_CRT_BTREE_RANK_SIZE, btree_k,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the byte number for an address */ if(H5P_register(crt_pclass,H5F_CRT_ADDR_BYTE_NUM_NAME, H5F_CRT_ADDR_BYTE_NUM_SIZE, &sizeof_addr,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the byte number for object size */ if(H5P_register(crt_pclass,H5F_CRT_OBJ_BYTE_NUM_NAME, H5F_CRT_OBJ_BYTE_NUM_SIZE,&sizeof_size,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the superblock version number */ if(H5P_register(crt_pclass,H5F_CRT_SUPER_VERS_NAME,H5F_CRT_SUPER_VERS_SIZE, &superblock_ver,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the free-space version number */ if(H5P_register(crt_pclass,H5F_CRT_FREESPACE_VERS_NAME, H5F_CRT_FREESPACE_VERS_SIZE,&freespace_ver,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the object directory version number */ if(H5P_register(crt_pclass,H5F_CRT_OBJ_DIR_VERS_NAME, H5F_CRT_OBJ_DIR_VERS_SIZE,&objectdir_ver,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the shared-header version number */ if(H5P_register(crt_pclass,H5F_CRT_SHARE_HEAD_VERS_NAME, H5F_CRT_SHARE_HEAD_VERS_SIZE, &sharedheader_ver,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") } /* end if */ /* Only register the default property list if it hasn't been created yet */ if(H5P_LST_FILE_CREATE_g==(-1)) { /* Register the default file creation property list */ if((H5P_LST_FILE_CREATE_g = H5P_create_id(crt_pclass))<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTREGISTER, FAIL, "can't insert property into class") } /* end if */ /* ========== File Access Property Class Initialization ============*/ assert(H5P_CLS_FILE_ACCESS_g!=-1); /* Get the pointer to file creation class */ if(NULL == (acs_pclass = H5I_object(H5P_CLS_FILE_ACCESS_g))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list class") /* Get the number of properties in the class */ if(H5P_get_nprops_pclass(acs_pclass,&nprops)<0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't query number of properties") /* Assume that if there are properties in the class, they are the default ones */ if(nprops==0) { /* Register the size of meta data cache(elements) */ if(H5P_register(acs_pclass,H5F_ACS_META_CACHE_SIZE_NAME,H5F_ACS_META_CACHE_SIZE_SIZE, &mdc_nelmts,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the size of raw data chunk cache (elements) */ if(H5P_register(acs_pclass,H5F_ACS_DATA_CACHE_ELMT_SIZE_NAME,H5F_ACS_DATA_CACHE_ELMT_SIZE_SIZE, &rdcc_nelmts,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the size of raw data chunk cache(bytes) */ if(H5P_register(acs_pclass,H5F_ACS_DATA_CACHE_BYTE_SIZE_NAME,H5F_ACS_DATA_CACHE_BYTE_SIZE_SIZE, &rdcc_nbytes,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the preemption for reading chunks */ if(H5P_register(acs_pclass,H5F_ACS_PREEMPT_READ_CHUNKS_NAME,H5F_ACS_PREEMPT_READ_CHUNKS_SIZE, &rdcc_w0,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the threshold for alignment */ if(H5P_register(acs_pclass,H5F_ACS_ALIGN_THRHD_NAME,H5F_ACS_ALIGN_THRHD_SIZE, &threshold,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the alignment */ if(H5P_register(acs_pclass,H5F_ACS_ALIGN_NAME,H5F_ACS_ALIGN_SIZE, &alignment,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the minimum metadata allocation block size */ if(H5P_register(acs_pclass,H5F_ACS_META_BLOCK_SIZE_NAME,H5F_ACS_META_BLOCK_SIZE_SIZE, &meta_block_size,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the maximum sieve buffer size */ if(H5P_register(acs_pclass,H5F_ACS_SIEVE_BUF_SIZE_NAME,H5F_ACS_SIEVE_BUF_SIZE_SIZE, &sieve_buf_size,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the minimum "small data" allocation block size */ if(H5P_register(acs_pclass,H5F_ACS_SDATA_BLOCK_SIZE_NAME,H5F_ACS_SDATA_BLOCK_SIZE_SIZE, &sdata_block_size,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the garbage collection reference */ if(H5P_register(acs_pclass,H5F_ACS_GARBG_COLCT_REF_NAME,H5F_ACS_GARBG_COLCT_REF_SIZE, &gc_ref,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the file driver ID */ if(H5P_register(acs_pclass,H5F_ACS_FILE_DRV_ID_NAME,H5F_ACS_FILE_DRV_ID_SIZE, &driver_id,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the file driver info */ if(H5P_register(acs_pclass,H5F_ACS_FILE_DRV_INFO_NAME,H5F_ACS_FILE_DRV_INFO_SIZE, &driver_info,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the file close degree */ if(H5P_register(acs_pclass,H5F_CLOSE_DEGREE_NAME,H5F_CLOSE_DEGREE_SIZE, &close_degree,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the offset of family driver info */ if(H5P_register(acs_pclass,H5F_ACS_FAMILY_OFFSET_NAME,H5F_ACS_FAMILY_OFFSET_SIZE, &family_offset,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the data type of multi driver info */ if(H5P_register(acs_pclass,H5F_ACS_MULTI_TYPE_NAME,H5F_ACS_MULTI_TYPE_SIZE, &mem_type,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") } /* end if */ /* Only register the default property list if it hasn't been created yet */ if(H5P_LST_FILE_ACCESS_g==(-1)) { /* Register the default file access property list */ if((H5P_LST_FILE_ACCESS_g = H5P_create_id(acs_pclass))<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTREGISTER, FAIL, "can't insert property into class") } /* end if */ /* ================ Mount Porperty Class Initialization ==============*/ assert(H5P_CLS_MOUNT_g!=-1); /* Get the pointer to file mount class */ if(NULL == (mnt_pclass = H5I_object(H5P_CLS_MOUNT_g))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list class") /* Get the number of properties in the class */ if(H5P_get_nprops_pclass(mnt_pclass,&nprops)<0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't query number of properties") /* Assume that if there are properties in the class, they are the default ones */ if(nprops==0) { /* Register property of whether symlinks is local to file */ if(H5P_register(mnt_pclass,H5F_MNT_SYM_LOCAL_NAME,H5F_MNT_SYM_LOCAL_SIZE, &local,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") } /* end if */ /* Only register the default property list if it hasn't been created yet */ if(H5P_LST_MOUNT_g==(-1)) { /* Register the default file mount property list */ if((H5P_LST_MOUNT_g = H5P_create_id(mnt_pclass))<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTREGISTER, FAIL, "can't insert property into class") } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_term_interface * * Purpose: Terminate this interface: free all memory and reset global * variables to their initial values. Release all ID groups * associated with this interface. * * Return: Success: Positive if anything was done that might * have affected other interfaces; zero * otherwise. * * Failure: Never fails. * * Programmer: Robb Matzke * Friday, February 19, 1999 * * Modifications: * *------------------------------------------------------------------------- */ int H5F_term_interface(void) { int n = 0; FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_term_interface) if (H5_interface_initialize_g) { if ((n=H5I_nmembers(H5I_FILE))) { H5I_clear_type(H5I_FILE, FALSE); } else if (0==(n=H5I_nmembers(H5I_FILE_CLOSING))) { H5I_dec_type_ref(H5I_FILE); H5I_dec_type_ref(H5I_FILE_CLOSING); H5_interface_initialize_g = 0; n = 1; /*H5I*/ } } FUNC_LEAVE_NOAPI(n) } /*---------------------------------------------------------------------------- * Function: H5F_acs_create * * Purpose: Callback routine which is called whenever a file access * property list is closed. This routine performs any generic * initialization needed on the properties the library put into * the list. * * Return: Success: Non-negative * Failure: Negative * * Programmer: Raymond Lu * Tuesday, Oct 23, 2001 * * Modifications: * *---------------------------------------------------------------------------- */ /* ARGSUSED */ herr_t H5F_acs_create(hid_t fapl_id, void UNUSED *copy_data) { hid_t driver_id; void* driver_info; H5P_genplist_t *plist; /* Property list */ herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI(H5F_acs_create, FAIL) /* Check argument */ if(NULL == (plist = H5I_object(fapl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") /* Retrieve properties */ if(H5P_get(plist, H5F_ACS_FILE_DRV_ID_NAME, &driver_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get drver ID") if(H5P_get(plist, H5F_ACS_FILE_DRV_INFO_NAME, &driver_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get drver info") if(driver_id > 0) { /* Set the driver for the property list */ if(H5FD_fapl_open(plist, driver_id, driver_info)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set driver") } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) } /*-------------------------------------------------------------------------- * Function: H5F_acs_copy * * Purpose: Callback routine which is called whenever a file access * property list is copied. This routine performs any generic * copy needed on the properties. * * Return: Success: Non-negative * Failure: Negative * Programmer: Raymond Lu * Tuesday, Oct 23, 2001 * * Modifications: * *-------------------------------------------------------------------------- */ /* ARGSUSED */ herr_t H5F_acs_copy(hid_t new_fapl_id, hid_t old_fapl_id, void UNUSED *copy_data) { hid_t driver_id; void* driver_info; H5P_genplist_t *new_plist; /* New property list */ H5P_genplist_t *old_plist; /* Old property list */ herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI(H5F_acs_copy, FAIL) if(NULL == (new_plist = H5I_object(new_fapl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") if(NULL == (old_plist = H5I_object(old_fapl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") /* Get values from old property list */ if(H5P_get(old_plist, H5F_ACS_FILE_DRV_ID_NAME, &driver_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get drver ID") if(H5P_get(old_plist, H5F_ACS_FILE_DRV_INFO_NAME, &driver_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get drver info") if(driver_id > 0) { /* Set the driver for the property list */ if(H5FD_fapl_open(new_plist, driver_id, driver_info)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set driver") } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) } /*-------------------------------------------------------------------------- * Function: H5F_acs_close * * Purpose: Callback routine which is called whenever a file access * property list is closed. This routine performs any generic * cleanup needed on the properties. * * Return: Success: Non-negative * * Failure: Negative * * Programmer: Raymond Lu * Tuesday, Oct 23, 2001 * * Modifications: * *--------------------------------------------------------------------------- */ /* ARGSUSED */ herr_t H5F_acs_close(hid_t fapl_id, void UNUSED *close_data) { hid_t driver_id; void *driver_info; H5P_genplist_t *plist; /* Property list */ herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI(H5F_acs_close, FAIL) /* Check argument */ if(NULL == (plist = H5I_object(fapl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") if(H5P_get(plist, H5F_ACS_FILE_DRV_ID_NAME, &driver_id) < 0) HGOTO_DONE(FAIL) /* Can't return errors when library is shutting down */ if(H5P_get(plist, H5F_ACS_FILE_DRV_INFO_NAME, &driver_info) < 0) HGOTO_DONE(FAIL) /* Can't return errors when library is shutting down */ if(driver_id > 0) { /* Close the driver for the property list */ if(H5FD_fapl_close(driver_id, driver_info)<0) HGOTO_DONE(FAIL) /* Can't return errors when library is shutting down */ } done: FUNC_LEAVE_NOAPI(ret_value) } #ifdef NOT_YET /*------------------------------------------------------------------------- * Function: H5F_flush_all_cb * * Purpose: Callback function for H5F_flush_all(). * * Return: Always returns zero. * * Programmer: Robb Matzke * Friday, February 19, 1999 * * Modifications: * Bill Wendling, 2003-03-18 * Changed H5F_flush to accept H5F_flush_t flags instead of a * series of h5bool_t's. * *------------------------------------------------------------------------- */ static int H5F_flush_all_cb(void *_f, hid_t UNUSED fid, void *_invalidate) { H5F_t *f=(H5F_t *)_f; unsigned invalidate = (*((hbool_t*)_invalidate); FUNC_ENTER_NOAPI_NOINIT(H5F_flush_all_cb) H5F_flush(f, H5F_SCOPE_LOCAL, (invalidate ? H5F_FLUSH_INVALIDATE : H5F_FLUSH_NONE)); FUNC_LEAVE_NOAPI(0) } /*------------------------------------------------------------------------- * Function: H5F_flush_all * * Purpose: Flush all open files. If INVALIDATE is true then also remove * everything from the cache. * * Return: Success: Non-negative * * Failure: Negative * * Programmer: Robb Matzke * Thursday, February 18, 1999 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5F_flush_all(hbool_t invalidate) { herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5F_flush_all, FAIL) H5I_search(H5I_FILE,H5F_flush_all_cb,&invalidate); done: FUNC_LEAVE_NOAPI(ret_value) } #endif /* NOT_YET */ #ifdef NOT_YET /*-------------------------------------------------------------------------- NAME H5F_encode_length_unusual -- encode an unusual length size USAGE void H5F_encode_length_unusual(f, p, l) const H5F_t *f; IN: pointer to the file record uint8_t **p; IN: pointer to buffer pointer to encode length in uint8_t *l; IN: pointer to length to encode ERRORS RETURNS none DESCRIPTION Encode non-standard (i.e. not 2, 4 or 8-byte) lengths in file meta-data. --------------------------------------------------------------------------*/ void H5F_encode_length_unusual(const H5F_t *f, uint8_t **p, uint8_t *l) { int i = (int)H5F_SIZEOF_SIZE(f)-1; #ifdef WORDS_BIGENDIAN /* * For non-little-endian platforms, encode each byte in memory backwards. */ for (/*void*/; i>=0; i--, (*p)++)*(*p) = *(l+i); #else /* platform has little-endian integers */ HDmemcpy(*p,l,(size_t)(i+1)); *p+=(i+1); #endif } #endif /* NOT_YET */ /*------------------------------------------------------------------------- * Function: H5Fget_create_plist * * Purpose: Get an atom for a copy of the file-creation property list for * this file. This function returns an atom with a copy of the * properties used to create a file. * * Return: Success: template ID * * Failure: FAIL * * Programmer: Unknown * * Modifications: * * Robb Matzke, 18 Feb 1998 * Calls H5P_copy_plist() to copy the property list and H5P_close() to free * that property list if an error occurs. * * Raymond Lu, Oct 14, 2001 * Changed to generic property list. * *------------------------------------------------------------------------- */ hid_t H5Fget_create_plist(hid_t file_id) { H5F_t *file = NULL; H5P_genplist_t *plist; /* Property list */ hid_t ret_value; FUNC_ENTER_API(H5Fget_create_plist, FAIL) H5TRACE1("i","i",file_id); /* check args */ if (NULL==(file=H5I_object_verify(file_id, H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") if(NULL == (plist = H5I_object(file->shared->fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") /* Create the property list object to return */ if((ret_value=H5P_copy_plist(plist)) < 0) HGOTO_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL, "unable to copy file creation properties") done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5Fget_access_plist * * Purpose: Returns a copy of the file access property list of the * specified file. * * NOTE: Make sure that, if you are going to overwrite * information in the copied property list that was * previously opened and assigned to the property list, then * you must close it before overwriting the values. * * Return: Success: Object ID for a copy of the file access * property list. * * Failure: FAIL * * Programmer: Robb Matzke * Wednesday, February 18, 1998 * * Modifications: * Raymond Lu, Oct 23, 2001 * Changed file access property list to the new generic * property list. * * Bill Wendling, Apr 21, 2003 * Fixed bug where the driver ID and info in the property * list were being overwritten but the original ID and info * weren't being close. * *------------------------------------------------------------------------- */ hid_t H5Fget_access_plist(hid_t file_id) { H5F_t *f = NULL; H5P_genplist_t *new_plist; /* New property list */ H5P_genplist_t *old_plist; /* Old property list */ hid_t ret_value = SUCCEED; void *driver_info=NULL; FUNC_ENTER_API(H5Fget_access_plist, FAIL) H5TRACE1("i","i",file_id); /* Check args */ if (NULL==(f=H5I_object_verify(file_id, H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") /* Make a copy of the default file access property list */ if(NULL == (old_plist = H5I_object(H5P_LST_FILE_ACCESS_g))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") if((ret_value=H5P_copy_plist(old_plist)) < 0) HGOTO_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL, "can't copy file access property list") if(NULL == (new_plist = H5I_object(ret_value))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") /* Copy properties of the file access property list */ if(H5P_set(new_plist, H5F_ACS_META_CACHE_SIZE_NAME, &(f->shared->mdc_nelmts)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set meta data cache size") if(H5P_set(new_plist, H5F_ACS_DATA_CACHE_ELMT_SIZE_NAME, &(f->shared->rdcc_nelmts)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set data cache element size") if(H5P_set(new_plist, H5F_ACS_DATA_CACHE_BYTE_SIZE_NAME, &(f->shared->rdcc_nbytes)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set data cache byte size") if(H5P_set(new_plist, H5F_ACS_PREEMPT_READ_CHUNKS_NAME, &(f->shared->rdcc_w0)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set preempt read chunks") if(H5P_set(new_plist, H5F_ACS_ALIGN_THRHD_NAME, &(f->shared->threshold)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set alignment threshold") if(H5P_set(new_plist, H5F_ACS_ALIGN_NAME, &(f->shared->alignment)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set alignment") if(H5P_set(new_plist, H5F_ACS_GARBG_COLCT_REF_NAME, &(f->shared->gc_ref)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set garbage collect reference") if(H5P_set(new_plist, H5F_ACS_META_BLOCK_SIZE_NAME, &(f->shared->lf->def_meta_block_size)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set meta data cache size") if(H5P_set(new_plist, H5F_ACS_SIEVE_BUF_SIZE_NAME, &(f->shared->sieve_buf_size)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't sieve buffer size") if(H5P_set(new_plist, H5F_ACS_SDATA_BLOCK_SIZE_NAME, &(f->shared->lf->def_sdata_block_size)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'small data' cache size") /* * Since we're resetting the driver ID and info, close them if they * exist in this new property list. */ if (H5F_acs_close(ret_value, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTFREE, FAIL, "can't free the old driver information") /* Increment the reference count on the driver ID and insert it into the property list */ if(H5I_inc_ref(f->shared->lf->driver_id)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTINC, FAIL, "unable to increment ref count on VFL driver") if(H5P_set(new_plist, H5F_ACS_FILE_DRV_ID_NAME, &(f->shared->lf->driver_id)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set file driver ID") /* Set the driver "info" in the property list */ driver_info = H5FD_fapl_get(f->shared->lf); if(driver_info != NULL && H5P_set(new_plist, H5F_ACS_FILE_DRV_INFO_NAME, &driver_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set file driver info") /* Set the file close degree appropriately */ if(f->shared->fc_degree == H5F_CLOSE_DEFAULT && H5P_set(new_plist, H5F_CLOSE_DEGREE_NAME, &(f->shared->lf->cls->fc_degree)) < 0) { HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set file close degree") } else if(f->shared->fc_degree != H5F_CLOSE_DEFAULT && H5P_set(new_plist, H5F_CLOSE_DEGREE_NAME, &(f->shared->fc_degree)) < 0) { HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set file close degree") } done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5Fget_obj_count * * Purpose: Public function returning the number of opened object IDs * (files, datasets, groups and datatypes) in the same file. * * Return: Non-negative on success; negative on failure. * * Programmer: Raymond Lu * Wednesday, Dec 5, 2001 * * Modification: * *------------------------------------------------------------------------- */ int H5Fget_obj_count(hid_t file_id, unsigned types) { H5F_t *f=NULL; int ret_value; /* Return value */ FUNC_ENTER_API(H5Fget_obj_count, FAIL) H5TRACE2("Is","iIu",file_id,types); if( file_id != (hid_t)H5F_OBJ_ALL && (NULL==(f=H5I_object_verify(file_id,H5I_FILE))) ) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file id") if( (types&H5F_OBJ_ALL)==0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not an object type") if((ret_value = H5F_get_obj_count(f, types))<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCOUNT, FAIL, "can't get object count") done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_get_obj_count * * Purpose: Private function return the number of opened object IDs * (files, datasets, groups, datatypes) in the same file. * * Return: Non-negative on success; negative on failure. * * Programmer: Raymond Lu * Wednesday, Dec 5, 2001 * * Modification: * *------------------------------------------------------------------------- */ int H5F_get_obj_count(const H5F_t *f, unsigned types) { int ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5F_get_obj_count) if((ret_value=H5F_get_objects(f, types, -1, NULL)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't get counts of opened file IDs and object IDs in the file") done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5Fget_object_ids * * Purpose: Public function to return a list of opened object IDs. * * Return: Non-negative on success; negative on failure. * * Programmer: Raymond Lu * Wednesday, Dec 5, 2001 * * Modification: * *------------------------------------------------------------------------- */ herr_t H5Fget_obj_ids(hid_t file_id, unsigned types, int max_objs, hid_t *oid_list) { herr_t ret_value; H5F_t *f=NULL; FUNC_ENTER_API(H5Fget_obj_ids, FAIL) H5TRACE4("e","iIuIs*i",file_id,types,max_objs,oid_list); if( file_id != (hid_t)H5F_OBJ_ALL && (NULL==(f=H5I_object_verify(file_id,H5I_FILE))) ) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file id") if( (types&H5F_OBJ_ALL)==0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not an object type") assert(oid_list); ret_value = H5F_get_obj_ids(f, types, max_objs, oid_list); done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_get_object_ids * * Purpose: Private function to return a list of opened object IDs. * * Return: Non-negative on success; negative on failure. * * Programmer: Raymond Lu * Wednesday, Dec 5, 2001 * * Modification: * *------------------------------------------------------------------------- */ int H5F_get_obj_ids(const H5F_t *f, unsigned types, int max_objs, hid_t *oid_list) { int ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5F_get_obj_ids) if((ret_value=H5F_get_objects(f, types, max_objs, oid_list)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't get object IDs opened in the file") done: FUNC_LEAVE_NOAPI(ret_value) } /*--------------------------------------------------------------------------- * Function: H5F_get_objects * * Purpose: This function is called by H5F_get_obj_count or * H5F_get_obj_ids to get number of object IDs and/or a * list of opened object IDs (in return value). * Return: Non-negative on success; negative on failure. * * Programmer: Raymond Lu * Wednesday, Dec 5, 2001 * * Modification: * *--------------------------------------------------------------------------- */ static int H5F_get_objects(const H5F_t *f, unsigned types, int max_index, hid_t *obj_id_list) { unsigned obj_id_count=0; /* Number of open IDs */ H5F_olist_t olist; /* Structure to hold search results */ int ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_get_objects) /* Set up search information */ olist.obj_id_list = (max_index==0 ? NULL : obj_id_list); olist.obj_id_count = &obj_id_count; olist.list_index = 0; olist.max_index = max_index; /* Shared file structure is used to verify if file IDs refer to the same * file. */ if(f != NULL) olist.shared = f->shared; else olist.shared = NULL; /* Search through file IDs to count the number, and put their * IDs on the object list */ if( (types & H5F_OBJ_FILE) && H5I_nmembers(H5I_FILE) > 0 ) { olist.obj_type = H5I_FILE; (void)H5I_search(H5I_FILE, H5F_get_objects_cb, &olist); } /* Search through dataset IDs to count number of datasets, and put their * IDs on the object list */ if( (max_index<0 || (int)olist.list_index< max_index) && (types & H5F_OBJ_DATASET) && H5I_nmembers(H5I_DATASET) > 0 ) { olist.obj_type = H5I_DATASET; (void)H5I_search(H5I_DATASET, H5F_get_objects_cb, &olist); } /* Search through group IDs to count number of groups, and put their * IDs on the object list */ if( (max_index<0 || (int)olist.list_index< max_index) && (types & H5F_OBJ_GROUP) && H5I_nmembers(H5I_GROUP) > 0 ) { olist.obj_type = H5I_GROUP; (void)H5I_search(H5I_GROUP, H5F_get_objects_cb, &olist); } /* Search through datatype IDs to count number of named datatypes, and put their * IDs on the object list */ if( (max_index<0 || (int)olist.list_index< max_index) && (types & H5F_OBJ_DATATYPE) && H5I_nmembers(H5I_DATATYPE) > 0 ) { olist.obj_type = H5I_DATATYPE; (void)H5I_search(H5I_DATATYPE, H5F_get_objects_cb, &olist); } /* Search through attribute IDs to count number of attributes, and put their * IDs on the object list */ if( (max_index<0 || (int)olist.list_index< max_index) && (types & H5F_OBJ_ATTR) && H5I_nmembers(H5I_ATTR) > 0 ) { olist.obj_type = H5I_ATTR; (void)H5I_search(H5I_ATTR, H5F_get_objects_cb, &olist); } /* Set the number of objects currently open */ H5_ASSIGN_OVERFLOW(ret_value,obj_id_count,unsigned,int); #ifdef LATER done: #endif /* LATER */ FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_get_objects_cb * * Purpose: H5F_get_objects' callback function. It verifies if an * object is in the file, and either count it or put its ID * on the list. * * Programmer: Raymond Lu * Wednesday, Dec 5, 2001 * * Modification: * *------------------------------------------------------------------------- */ static int H5F_get_objects_cb(void *obj_ptr, hid_t obj_id, void *key) { H5F_olist_t *olist = (H5F_olist_t *)key; /* Alias for search info */ int ret_value = FALSE; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5F_get_objects_cb) assert(obj_ptr); assert(olist); /* Count file IDs */ if(olist->obj_type == H5I_FILE) { if( !olist->shared || (olist->shared && ((H5F_t*)obj_ptr)->shared == olist->shared) ) { /* Add the object's ID to the ID list, if appropriate */ if(olist->obj_id_list) { olist->obj_id_list[olist->list_index] = obj_id; olist->list_index++; } /* Increment the number of open objects */ if(olist->obj_id_count) (*olist->obj_id_count)++; /* Check if we've filled up the array */ if(olist->max_index>=0 && (int)olist->list_index>=olist->max_index) HGOTO_DONE(TRUE) /* Indicate that the iterator should stop */ } } else { /* either count opened object IDs or put the IDs on the list */ H5G_entry_t *ent; /* Group entry info for object */ switch(olist->obj_type) { case H5I_ATTR: ent = H5A_entof((H5A_t*)obj_ptr); break; case H5I_GROUP: ent = H5G_entof((H5G_t*)obj_ptr); break; case H5I_DATASET: ent = H5D_entof((H5D_t*)obj_ptr); break; case H5I_DATATYPE: if(H5T_is_named((H5T_t*)obj_ptr)==TRUE) ent = H5T_entof((H5T_t*)obj_ptr); else ent = NULL; break; default: HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "unknown data object") } if( (!olist->shared && olist->obj_type==H5I_DATATYPE && H5T_is_immutable((H5T_t*)obj_ptr)==FALSE) || (!olist->shared && olist->obj_type!=H5I_DATATYPE) || (ent && ent->file->shared == olist->shared) ) { /* Add the object's ID to the ID list, if appropriate */ if(olist->obj_id_list) { olist->obj_id_list[olist->list_index] = obj_id; olist->list_index++; } /* Increment the number of open objects */ if(olist->obj_id_count) (*olist->obj_id_count)++; /* Check if we've filled up the array */ if(olist->max_index>=0 && (int)olist->list_index>=olist->max_index) HGOTO_DONE(TRUE) /* Indicate that the iterator should stop */ } } done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5Fget_vfd_handle * * Purpose: Returns a pointer to the file handle of the low-level file * driver. * * Return: Success: non-negative value. * * Failture: negative. * * Programmer: Raymond Lu * Sep. 16, 2002 * * Modification: * *------------------------------------------------------------------------- */ herr_t H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle) { H5F_t *file=NULL; herr_t ret_value; FUNC_ENTER_API(H5Fget_vfd_handle, FAIL) H5TRACE3("e","iix",file_id,fapl,file_handle); /* Check args */ assert(file_handle); if(NULL==(file=H5I_object_verify(file_id, H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file id") ret_value=H5F_get_vfd_handle(file, fapl, file_handle); done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_get_vfd_handle * * Purpose: Returns a pointer to the file handle of the low-level file * driver. This is the private function for H5Fget_vfd_handle. * * Return: Success: Non-negative. * * Failture: negative. * * Programmer: Raymond Lu * Sep. 16, 2002 * * Modification: * *------------------------------------------------------------------------- */ static herr_t H5F_get_vfd_handle(const H5F_t *file, hid_t fapl, void**file_handle) { herr_t ret_value; FUNC_ENTER_NOAPI_NOINIT(H5F_get_vfd_handle) assert(file_handle); if((ret_value=H5FD_get_vfd_handle(file->shared->lf, fapl, file_handle)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't get file handle for file driver") done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_equal * * Purpose: Compares NEEDLE to a file from the HAYSTACK. * * Return: Success: Returns positive if two files are equal, * zero otherwise. * * Failure: Negative * * Programmer: Robb Matzke * Monday, August 2, 1999 * * Modifications: * *------------------------------------------------------------------------- */ /* ARGSUSED */ static int H5F_equal(void *_haystack, hid_t UNUSED id, void *_needle) { H5F_t *haystack = (H5F_t*)_haystack; const H5FD_t *needle = (const H5FD_t*)_needle; int retval; FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_equal) retval = (0==H5FD_cmp(haystack->shared->lf, needle)); FUNC_LEAVE_NOAPI(retval) } /*------------------------------------------------------------------------- * Function: H5F_locate_signature * * Purpose: Finds the HDF5 super block signature in a file. The signature * can appear at address 0, or any power of two beginning with * 512. * * Return: Success: The absolute format address of the signature. * * Failure: HADDR_UNDEF * * Programmer: Robb Matzke * Friday, November 7, 1997 * * Modifications: * Robb Matzke, 1999-08-02 * Rewritten to use the virtual file layer. *------------------------------------------------------------------------- */ static haddr_t H5F_locate_signature(H5FD_t *file, hid_t dxpl_id) { haddr_t addr, eoa; uint8_t buf[H5F_SIGNATURE_LEN]; unsigned n, maxpow; haddr_t ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5F_locate_signature) /* Find the least N such that 2^N is larger than the file size */ if (HADDR_UNDEF==(addr=H5FD_get_eof(file)) || HADDR_UNDEF==(eoa=H5FD_get_eoa(file))) HGOTO_ERROR(H5E_IO, H5E_CANTINIT, HADDR_UNDEF, "unable to obtain EOF/EOA value") for (maxpow=0; addr; maxpow++) addr>>=1; maxpow = MAX(maxpow, 9); /* * Search for the file signature at format address zero followed by * powers of two larger than 9. */ for (n=8; n=maxpow) { (void)H5FD_set_eoa(file, eoa); /* Ignore return value */ HGOTO_ERROR(H5E_IO, H5E_CANTINIT, HADDR_UNDEF, "unable to find a valid file signature") } /* Set return value */ ret_value=addr; done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5Fis_hdf5 * * Purpose: Check the file signature to detect an HDF5 file. * * Bugs: This function is not robust: it only uses the default file * driver when attempting to open the file when in fact it * should use all known file drivers. * * Return: Success: TRUE/FALSE * * Failure: Negative * * Programmer: Unknown * * Modifications: * Robb Matzke, 1999-08-02 * Rewritten to use the virtual file layer. *------------------------------------------------------------------------- */ htri_t H5Fis_hdf5(const char *name) { H5FD_t *file = NULL; htri_t ret_value; FUNC_ENTER_API(H5Fis_hdf5, FAIL) H5TRACE1("t","s",name); /* Check args and all the boring stuff. */ if (!name || !*name) HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "no file name specified") /* Open the file at the virtual file layer */ if (NULL==(file=H5FD_open(name, H5F_ACC_RDONLY, H5P_FILE_ACCESS_DEFAULT, HADDR_UNDEF))) HGOTO_ERROR(H5E_IO, H5E_CANTINIT, FAIL, "unable to open file") /* The file is an hdf5 file if the hdf5 file signature can be found */ ret_value = (HADDR_UNDEF!=H5F_locate_signature(file, H5AC_ind_dxpl_id)); done: /* Close the file */ if (file) if(H5FD_close(file)<0 && ret_value>=0) HDONE_ERROR(H5E_IO, H5E_CANTCLOSEFILE, FAIL, "unable to close file") FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_new * * Purpose: Creates a new file object and initializes it. The * H5Fopen and H5Fcreate functions then fill in various * fields. If SHARED is a non-null pointer then the shared info * to which it points has the reference count incremented. * Otherwise a new, empty shared info struct is created and * initialized with the specified file access property list. * * Errors: * * Return: Success: Ptr to a new file struct. * * Failure: NULL * * Programmer: Robb Matzke * matzke@llnl.gov * Jul 18 1997 * * Modifications: * * Raymond Lu, Oct 14, 2001 * Changed the file creation and access property list to the * new generic property list. * *------------------------------------------------------------------------- */ static H5F_t * H5F_new(H5F_file_t *shared, hid_t fcpl_id, hid_t fapl_id) { H5F_t *f=NULL, *ret_value; int n; H5P_genplist_t *plist; /* Property list */ FUNC_ENTER_NOAPI_NOINIT(H5F_new) if (NULL==(f=H5FL_CALLOC(H5F_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") if (shared) { f->shared = shared; } else { f->shared = H5FL_CALLOC(H5F_file_t); f->shared->super_addr = HADDR_UNDEF; f->shared->base_addr = HADDR_UNDEF; f->shared->freespace_addr = HADDR_UNDEF; f->shared->driver_addr = HADDR_UNDEF; /* * Copy the file creation and file access property lists into the * new file handle. We do this early because some values might need * to change as the file is being opened. */ if(NULL == (plist = H5I_object(fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not property list") f->shared->fcpl_id = H5P_copy_plist(plist); /* Get the FCPL values to cache */ if(H5P_get(plist, H5F_CRT_ADDR_BYTE_NUM_NAME, &f->shared->sizeof_addr)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get byte number for address") if(H5P_get(plist, H5F_CRT_OBJ_BYTE_NUM_NAME, &f->shared->sizeof_size)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get byte number for object size") if(H5P_get(plist, H5F_CRT_SYM_LEAF_NAME, &f->shared->sym_leaf_k)<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get byte number for object size") if(H5P_get(plist, H5F_CRT_BTREE_RANK_NAME, &f->shared->btree_k[0])<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "unable to get rank for btree internal nodes") /* Check for non-default indexed storage B-tree internal 'K' value * and increment the version # of the superblock if it is a non-default * value. */ if(f->shared->btree_k[H5B_ISTORE_ID]!=HDF5_BTREE_ISTORE_IK_DEF) { unsigned super_vers=HDF5_SUPERBLOCK_VERSION_MAX; /* Super block version */ H5P_genplist_t *c_plist; /* Property list */ if(NULL == (c_plist = H5I_object(f->shared->fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not property list") if(H5P_set(c_plist, H5F_CRT_SUPER_VERS_NAME, &super_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set superblock version") } /* end if */ if(NULL == (plist = H5I_object(fapl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not file access property list") if(H5P_get(plist, H5F_ACS_META_CACHE_SIZE_NAME, &(f->shared->mdc_nelmts)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get meta data cache size") if(H5P_get(plist, H5F_ACS_DATA_CACHE_ELMT_SIZE_NAME, &(f->shared->rdcc_nelmts)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get data cache element size") if(H5P_get(plist, H5F_ACS_DATA_CACHE_BYTE_SIZE_NAME, &(f->shared->rdcc_nbytes)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get data cache cache size") if(H5P_get(plist, H5F_ACS_PREEMPT_READ_CHUNKS_NAME, &(f->shared->rdcc_w0)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get preempt read chunk") if(H5P_get(plist, H5F_ACS_ALIGN_THRHD_NAME, &(f->shared->threshold))<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get alignment threshold") if(H5P_get(plist, H5F_ACS_ALIGN_NAME, &(f->shared->alignment)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get alignment") if(H5P_get(plist, H5F_ACS_GARBG_COLCT_REF_NAME,&(f->shared->gc_ref))<0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get garbage collect reference") if(H5P_get(plist, H5F_ACS_SIEVE_BUF_SIZE_NAME, &(f->shared->sieve_buf_size)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get sieve buffer size") /* * Create a meta data cache with the specified number of elements. * The cache might be created with a different number of elements and * the access property list should be updated to reflect that. */ if ((n=H5AC_create(f, f->shared->mdc_nelmts))<0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "unable to create meta data cache") f->shared->mdc_nelmts = n; /* Create the file's "open object" information */ if(H5FO_create(f)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "unable to create open object TBBT") } /* end else */ f->shared->nrefs++; f->nrefs = 1; /* Set return value */ ret_value = f; done: if (!ret_value && f) { if (!shared) H5FL_FREE(H5F_file_t,f->shared); H5FL_FREE(H5F_t,f); } FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_dest * * Purpose: Destroys a file structure. This function flushes the cache * but doesn't do any other cleanup other than freeing memory * for the file struct. The shared info for the file is freed * only when its reference count reaches zero. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * matzke@llnl.gov * Jul 18 1997 * * Modifications: * * Robb Matzke, 1998-10-14 * Nothing happens unless the reference count for the H5F_t goes to * zero. The reference counts are decremented here. * * Robb Matzke, 1999-02-19 * More careful about decrementing reference counts so they don't go * negative or wrap around to some huge value. Nothing happens if a * reference count is already zero. * * Robb Matzke, 2000-10-31 * H5FL_FREE() aborts if called with a null pointer (unlike the * original H5MM_free()). * * Pedro Vicente, 18 Sep 2002 * Added `id to name' support. * *------------------------------------------------------------------------- */ static herr_t H5F_dest(H5F_t *f, hid_t dxpl_id) { herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT(H5F_dest) if (f && 1==f->nrefs) { if (1==f->shared->nrefs) { /* * Do not close the root group since we didn't count it, but free * the memory associated with it. */ if (f->shared->root_grp) { /* Free the ID to name buffer */ if(H5G_free_grp_name(f->shared->root_grp)<0) { HERROR(H5E_FILE, H5E_CANTRELEASE, "problems closing file"); ret_value = FAIL; /*but keep going*/ } /* end if */ /* Free the memory for the root group */ H5FL_FREE(H5G_t,f->shared->root_grp); f->shared->root_grp=NULL; } if (H5AC_dest(f, dxpl_id)) { HERROR(H5E_FILE, H5E_CANTRELEASE, "problems closing file"); ret_value = FAIL; /*but keep going*/ } if (H5FO_dest(f)<0) { HERROR(H5E_FILE, H5E_CANTRELEASE, "problems closing file"); ret_value = FAIL; /*but keep going*/ } /* end if */ f->shared->cwfs = H5MM_xfree (f->shared->cwfs); /* Destroy file creation properties */ if(H5I_GENPROP_LST != H5I_get_type(f->shared->fcpl_id)) HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a property list") if((ret_value=H5I_dec_ref(f->shared->fcpl_id)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTFREE, FAIL, "can't close property list") /* Destroy shared file struct */ if (H5FD_close(f->shared->lf)<0) { HERROR(H5E_FILE, H5E_CANTINIT, "problems closing file"); ret_value = FAIL; /*but keep going*/ } f->shared = H5FL_FREE(H5F_file_t,f->shared); } else if (f->shared->nrefs>0) { /* * There are other references to the shared part of the file. * Only decrement the reference count. */ --f->shared->nrefs; } /* Free the non-shared part of the file */ f->name = H5MM_xfree(f->name); f->mtab.child = H5MM_xfree(f->mtab.child); f->mtab.nalloc = 0; H5FL_FREE(H5F_t,f); } else if (f && f->nrefs>0) { /* * There are other references to this file. Only decrement the * reference count. */ --f->nrefs; } done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_open * * Purpose: Opens (or creates) a file. This function understands the * following flags which are similar in nature to the Posix * open(2) flags. * * H5F_ACC_RDWR: Open with read/write access. If the file is * currently open for read-only access then it * will be reopened. Absence of this flag * implies read-only access. * * H5F_ACC_CREAT: Create a new file if it doesn't exist yet. * The permissions are 0666 bit-wise AND with * the current umask. H5F_ACC_WRITE must also * be specified. * * H5F_ACC_EXCL: This flag causes H5F_open() to fail if the * file already exists. * * H5F_ACC_TRUNC: The file is truncated and a new HDF5 superblock * is written. This operation will fail if the * file is already open. * * Unlinking the file name from the group directed graph while * the file is opened causes the file to continue to exist but * one will not be able to upgrade the file from read-only * access to read-write access by reopening it. Disk resources * for the file are released when all handles to the file are * closed. NOTE: This paragraph probably only applies to Unix; * deleting the file name in other OS's has undefined results. * * The CREATE_PARMS argument is optional. A null pointer will * cause the default file creation parameters to be used. * * The ACCESS_PARMS argument is optional. A null pointer will * cause the default file access parameters to be used. * * Return: Success: A new file pointer. * * Failure: NULL * * Programmer: Robb Matzke * Tuesday, September 23, 1997 * * Modifications: * Albert Cheng, 1998-02-05 * Added the access_parms argument to pass down access template * information. * * Robb Matzke, 1998-02-18 * The H5F_access_t changed to allow more generality. The low * level driver is part of the file access template so the TYPE * argument has been removed. * * Robb Matzke, 1999-08-02 * Rewritten to use the virtual file layer. * * Robb Matzke, 1999-08-16 * Added decoding of file driver information block, which uses a * formerly reserved address slot in the boot block in order to * be compatible with previous versions of the file format. * * Robb Matzke, 1999-08-20 * Optimizations for opening a file. If the driver can't * determine when two file handles refer to the same file then * we open the file in one step. Otherwise if the first attempt * to open the file fails then we skip the second attempt if the * arguments would be the same. * * Raymond Lu, 2001-10-14 * Changed the file creation and access property lists to the * new generic property list. * * Bill Wendling, 2003-03-18 * Modified H5F_flush call to take one flag instead of * multiple Boolean flags. * *------------------------------------------------------------------------- */ static H5F_t * H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id, hid_t dxpl_id) { H5F_t *file = NULL; /*the success return value */ H5F_file_t *shared = NULL; /*shared part of `file' */ H5FD_t *lf = NULL; /*file driver part of `shared' */ H5G_entry_t root_ent; /*root symbol table entry */ unsigned tent_flags; /*tentative flags */ H5FD_class_t *drvr; /*file driver class info */ hbool_t driver_has_cmp; /*`cmp' callback defined? */ H5P_genplist_t *a_plist; /*file access property list */ H5F_close_degree_t fc_degree; /*file close degree */ H5F_t *ret_value = NULL; /*actual return value */ FUNC_ENTER_NOAPI(H5F_open, NULL) /* * If the driver has a `cmp' method then the driver is capable of * determining when two file handles refer to the same file and the * library can insure that when the application opens a file twice * that the two handles coordinate their operations appropriately. * Otherwise it is the application's responsibility to never open the * same file more than once at a time. */ if((drvr=H5FD_get_class(fapl_id))==NULL) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "unable to retrieve VFL class") driver_has_cmp = (NULL!=drvr->cmp); /* * Opening a file is a two step process. First we try to open the * file in a way which doesn't affect its state (like not truncating * or creating it) so we can compare it with files that are already * open. If that fails then we try again with the full set of flags * (only if they're different than the original failed attempt). * However, if the file driver can't distinquish between files then * there's no reason to open the file tentatively because it's the * application's responsibility to prevent this situation (there's no * way for us to detect it here anyway). */ if (driver_has_cmp) { tent_flags = flags & ~(H5F_ACC_CREAT|H5F_ACC_TRUNC|H5F_ACC_EXCL); } else { tent_flags = flags; } if (NULL==(lf=H5FD_open(name, tent_flags, fapl_id, HADDR_UNDEF))) { if (tent_flags == flags) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file") H5E_clear(NULL); tent_flags = flags; if (NULL==(lf=H5FD_open(name, tent_flags, fapl_id, HADDR_UNDEF))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file") } /* end if */ /* Is the file already open? */ if ((file=H5I_search(H5I_FILE, H5F_equal, lf)) || (file=H5I_search(H5I_FILE_CLOSING, H5F_equal, lf))) { /* * The file is already open, so use that one instead of the one we * just opened. We only one one H5FD_t* per file so one doesn't * confuse the other. But fail if this request was to truncate the * file (since we can't do that while the file is open), or if the * request was to create a non-existent file (since the file already * exists), or if the new request adds write access (since the * readers don't expect the file to change under them). */ if(H5FD_close(lf)<0) { file = NULL; /*to prevent destruction of wrong file*/ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to close low-level file info") } /* end if */ if (flags & H5F_ACC_TRUNC) { file = NULL; /*to prevent destruction of wrong file*/ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to truncate a file which is already open") } if (flags & H5F_ACC_EXCL) { file = NULL; /*to prevent destruction of wrong file*/ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "file exists") } if ((flags & H5F_ACC_RDWR) && 0==(file->intent & H5F_ACC_RDWR)) { file = NULL; /*to prevent destruction of wrong file*/ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "file is already open for read-only") } if ((file = H5F_new(file->shared, fcpl_id, fapl_id)) == NULL) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to create new file object") lf = file->shared->lf; } else if (flags!=tent_flags) { /* * This file is not yet open by the library and the flags we used to * open it are different than the desired flags. Close the tentative * file and open it for real. */ if(H5FD_close(lf)<0) { file = NULL; /*to prevent destruction of wrong file*/ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to close low-level file info") } /* end if */ if (NULL==(lf=H5FD_open(name, flags, fapl_id, HADDR_UNDEF))) { file = NULL; /*to prevent destruction of wrong file*/ HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file") } if (NULL==(file = H5F_new(NULL, fcpl_id, fapl_id))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to create new file object") file->shared->flags = flags; file->shared->lf = lf; } else { /* * This file is not yet open by the library and our tentative opening * above is good enough. */ if (NULL==(file = H5F_new(NULL, fcpl_id, fapl_id))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to create new file object") file->shared->flags = flags; file->shared->lf = lf; } /* Short cuts */ shared = file->shared; lf = shared->lf; /* * The intent at the top level file struct are not necessarily the same as * the flags at the bottom. The top level describes how the file can be * accessed through the HDF5 library. The bottom level describes how the * file can be accessed through the C library. */ file->intent = flags; file->name = H5MM_xstrdup(name); /* * Read or write the file superblock, depending on whether the file is * empty or not. */ if (0==H5FD_get_eof(lf) && (flags & H5F_ACC_RDWR)) { hsize_t buf_size=0; /* Size of buffer needed to hold superblock info */ void *buf=NULL; /* Buffer to hold superblock info */ /* * We've just opened a fresh new file (or truncated one). We need * to create & write the superblock. */ #ifdef H5_HAVE_FPHDF5 if (!H5FD_is_fphdf5_driver(lf) || H5FD_fphdf5_is_captain(lf)) { #endif /* H5_HAVE_FPHDF5 */ /* Initialize information about the superblock and allocate space for it */ if ((buf_size=H5F_init_superblock(file, dxpl_id)) == 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "unable to allocate file superblock") /* Create and open the root group */ /* (This must be after the space for the superblock is allocated in * the file) */ if (H5G_mkroot(file, dxpl_id, NULL)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "unable to create/open root group") #ifdef H5_HAVE_FPHDF5 if (H5FD_is_fphdf5_driver(lf)) { /* Allocate room for the superblock buffer */ H5_CHECK_OVERFLOW(buf_size, hsize_t, size_t); if((buf=H5MM_malloc((size_t)buf_size))==NULL) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for superblock buffer") } /* end if */ #endif /* H5_HAVE_FPHDF5 */ /* Write the superblock to the file */ /* (This must be after the root group is created, since the root * group's symbol table entry is part of the superblock) */ if (H5F_write_superblock(file, dxpl_id, buf) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "unable to write file superblock") #ifdef H5_HAVE_FPHDF5 } /* end if */ /* If this file is using the FPHDF5 driver, broadcast the superblock * from the captain to the other clients */ if (H5FD_is_fphdf5_driver(lf)) { int mrc; /*MPI return code */ H5FP_super_t super_info; /* Superblock information */ /* Captain sets up the information */ if (H5FD_fphdf5_is_captain(lf)) { super_info.addr=shared->super_addr; super_info.size=buf_size; } /* end if */ /* Broadcast the superblock information */ if ((mrc = MPI_Bcast(&super_info, 1, H5FP_super, (int)H5FP_capt_barrier_rank, H5FP_SAP_BARRIER_COMM)) != MPI_SUCCESS) HMPI_GOTO_ERROR(NULL, "MPI_Bcast failed", mrc) /* Non-captain clients allocate the buffer now */ if (!H5FD_fphdf5_is_captain(lf)) { /* Allocate room for the superblock buffer */ H5_CHECK_OVERFLOW(super_info.size, hsize_t, size_t); if((buf=H5MM_malloc((size_t)super_info.size))==NULL) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for superblock buffer") } /* end if */ /* Broadcast the actual superblock */ H5_CHECK_OVERFLOW(super_info.size, hsize_t, int); if ((mrc = MPI_Bcast(buf, (int)super_info.size, MPI_BYTE, (int)H5FP_capt_barrier_rank, H5FP_SAP_BARRIER_COMM)) != MPI_SUCCESS) HMPI_GOTO_ERROR(NULL, "MPI_Bcast failed", mrc) if (!H5FD_fphdf5_is_captain(lf)) { if (H5F_read_superblock(file, dxpl_id, &root_ent, super_info.addr, buf, (size_t)super_info.size) < 0) HGOTO_ERROR(H5E_FILE, H5E_READERROR, NULL, "unable to read superblock") } /* The following barrier ensures that all set eoa operations * associated with creating the superblock are complete before * we attempt any allocations. * JRM - 4/13/04 */ if ( (mrc = MPI_Barrier(H5FP_SAP_BARRIER_COMM)) != MPI_SUCCESS ) { HMPI_GOTO_ERROR(NULL, "MPI_Barrier failed", mrc) } if (!H5FD_fphdf5_is_captain(lf)) { if (H5G_mkroot(file, dxpl_id, &root_ent) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "unable to create/open root group") } /* All clients free the buffer used for broadcasting the superblock */ buf = H5MM_xfree (buf); } /* end if */ #endif /* H5_HAVE_FPHDF5 */ } else if (1 == shared->nrefs) { #ifdef H5_HAVE_FPHDF5 int mrc; /*MPI return code */ #endif /* H5_HAVE_FPHDF5 */ /* Read the superblock if it hasn't been read before. */ if (HADDR_UNDEF == (shared->super_addr = H5F_locate_signature(lf,dxpl_id))) HGOTO_ERROR(H5E_FILE, H5E_NOTHDF5, NULL, "unable to find file signature") if (H5F_read_superblock(file, dxpl_id, &root_ent, shared->super_addr, NULL, 0) < 0) HGOTO_ERROR(H5E_FILE, H5E_READERROR, NULL, "unable to read superblock") #ifdef H5_HAVE_FPHDF5 if (H5FD_is_fphdf5_driver(lf)) { /* reading the superblock generates lots of set_eoa calls. To avoid * race conditions with allocations, make sure that everyone is done * reading the superblock before we proceed. */ if ( (mrc = MPI_Barrier(H5FP_SAP_BARRIER_COMM)) != MPI_SUCCESS ) { HMPI_GOTO_ERROR(NULL, "MPI_Barrier failed", mrc) } } #endif /* H5_HAVE_FPHDF5 */ /* Make sure we can open the root group */ if (H5G_mkroot(file, dxpl_id, &root_ent) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read root group") } /* * Decide the file close degree. If it's the first time to open the * file, set the degree to access property list value; if it's the * second time or later, verify the access property list value matches * the degree in shared file structure. */ if(NULL == (a_plist = H5I_object(fapl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not file access property list") if(H5P_get(a_plist, H5F_CLOSE_DEGREE_NAME, &fc_degree) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get file close degree") if(shared->nrefs == 1) { if(fc_degree == H5F_CLOSE_DEFAULT) shared->fc_degree = shared->lf->cls->fc_degree; else shared->fc_degree = fc_degree; } else if(shared->nrefs > 1) { if(fc_degree==H5F_CLOSE_DEFAULT && shared->fc_degree!=shared->lf->cls->fc_degree) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "file close degree doesn't match") if(fc_degree!=H5F_CLOSE_DEFAULT && fc_degree != shared->fc_degree) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "file close degree doesn't match") } /* Success */ ret_value = file; done: if (!ret_value && file) if(H5F_dest(file, dxpl_id)<0) HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, NULL, "problems closing file") FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5Fcreate * * Purpose: This is the primary function for creating HDF5 files . The * flags parameter determines whether an existing file will be * overwritten or not. All newly created files are opened for * both reading and writing. All flags may be combined with the * bit-wise OR operator (`|') to change the behavior of the file * create call. * * The more complex behaviors of a file's creation and access * are controlled through the file-creation and file-access * property lists. The value of H5P_DEFAULT for a template * value indicates that the library should use the default * values for the appropriate template. * * See also: H5Fpublic.h for the list of supported flags. H5Ppublic.h for * the list of file creation and file access properties. * * Return: Success: A file ID * * Failure: FAIL * * Programmer: Unknown * * Modifications: * Robb Matzke, 1997-07-18 * File struct creation and destruction is through H5F_new() and * H5F_dest(). Writing the root symbol table entry is done with * H5G_encode(). * * Robb Matzke, 1997-08-29 * Moved creation of the boot block to H5F_flush(). * * Robb Matzke, 1997-09-23 * Most of the work is now done by H5F_open() since H5Fcreate() * and H5Fopen() originally contained almost identical code. * * Robb Matzke, 1998-02-18 * Better error checking for the creation and access property * lists. It used to be possible to swap the two and core the * library. Also, zero is no longer valid as a default property * list; one must use H5P_DEFAULT instead. * * Robb Matzke, 1999-08-02 * The file creation and file access property lists are passed * to the H5F_open() as object IDs. * * Raymond Lu, 2001-10-14 * Changed the file creation and access property list to the * new generic property list. * *------------------------------------------------------------------------- */ hid_t H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id) { H5F_t *new_file = NULL; /*file struct for new file */ hid_t ret_value; /*return value */ FUNC_ENTER_API(H5Fcreate, FAIL) H5TRACE4("i","sIuii",filename,flags,fcpl_id,fapl_id); /* Check/fix arguments */ if (!filename || !*filename) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file name") if (flags & ~(H5F_ACC_EXCL|H5F_ACC_TRUNC|H5F_ACC_DEBUG)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid flags") if ((flags & H5F_ACC_EXCL) && (flags & H5F_ACC_TRUNC)) HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "mutually exclusive flags for file creation") /* Check file creation property list */ if(H5P_DEFAULT == fcpl_id) fcpl_id = H5P_FILE_CREATE_DEFAULT; else if(TRUE != H5P_isa_class(fcpl_id, H5P_FILE_CREATE)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not file create property list") /* Check the file access property list */ if(H5P_DEFAULT == fapl_id) fapl_id = H5P_FILE_ACCESS_DEFAULT; else if(TRUE != H5P_isa_class(fapl_id, H5P_FILE_ACCESS)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not file access property list") /* * Adjust bit flags by turning on the creation bit and making sure that * the EXCL or TRUNC bit is set. All newly-created files are opened for * reading and writing. */ if (0==(flags & (H5F_ACC_EXCL|H5F_ACC_TRUNC))) flags |= H5F_ACC_EXCL; /*default*/ flags |= H5F_ACC_RDWR | H5F_ACC_CREAT; /* * Create a new file or truncate an existing file. */ if (NULL==(new_file=H5F_open(filename, flags, fcpl_id, fapl_id, H5AC_dxpl_id))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to create file") /* Get an atom for the file */ if ((ret_value = H5I_register(H5I_FILE, new_file))<0) HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file") /* Keep this ID in file object structure */ new_file->file_id = ret_value; done: if (ret_value<0 && new_file) if(H5F_close(new_file)<0) HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file") FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5Fopen * * Purpose: This is the primary function for accessing existing HDF5 * files. The FLAGS argument determines whether writing to an * existing file will be allowed or not. All flags may be * combined with the bit-wise OR operator (`|') to change the * behavior of the file open call. The more complex behaviors * of a file's access are controlled through the file-access * property list. * * See Also: H5Fpublic.h for a list of possible values for FLAGS. * * Return: Success: A file ID * * Failure: FAIL * * Programmer: Unknown * * Modifications: * Robb Matzke, 1997-07-18 * File struct creation and destruction is through H5F_new() and * H5F_dest(). Reading the root symbol table entry is done with * H5G_decode(). * * Robb Matzke, 1997-09-23 * Most of the work is now done by H5F_open() since H5Fcreate() * and H5Fopen() originally contained almost identical code. * * Robb Matzke, 1998-02-18 * Added better error checking for the flags and the file access * property list. It used to be possible to make the library * dump core by passing an object ID that was not a file access * property list. * * Robb Matzke, 1999-08-02 * The file access property list is passed to the H5F_open() as * object IDs. *------------------------------------------------------------------------- */ hid_t H5Fopen(const char *filename, unsigned flags, hid_t fapl_id) { H5F_t *new_file = NULL; /*file struct for new file */ hid_t ret_value; /*return value */ FUNC_ENTER_API(H5Fopen, FAIL) H5TRACE3("i","sIui",filename,flags,fapl_id); /* Check/fix arguments. */ if (!filename || !*filename) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file name") if ((flags & ~H5F_ACC_PUBLIC_FLAGS) || (flags & H5F_ACC_TRUNC) || (flags & H5F_ACC_EXCL)) HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file open flags") if(H5P_DEFAULT == fapl_id) fapl_id = H5P_FILE_ACCESS_DEFAULT; else if(TRUE != H5P_isa_class(fapl_id, H5P_FILE_ACCESS)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not file access property list") /* Open the file */ if (NULL==(new_file=H5F_open(filename, flags, H5P_FILE_CREATE_DEFAULT, fapl_id, H5AC_dxpl_id))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to open file") /* Get an atom for the file */ if ((ret_value = H5I_register(H5I_FILE, new_file))<0) HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file handle") /* Keep this ID in file object structure */ new_file->file_id = ret_value; done: if (ret_value<0 && new_file) if(H5F_close(new_file)<0) HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file") FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5Fflush * * Purpose: Flushes all outstanding buffers of a file to disk but does * not remove them from the cache. The OBJECT_ID can be a file, * dataset, group, attribute, or named data type. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Thursday, August 6, 1998 * * Modifications: * Robb Matzke, 1998-10-16 * Added the `scope' argument. * * Bill Wendling, 2003-03-18 * Modified H5F_flush call to take one flag instead of * several Boolean flags. * *------------------------------------------------------------------------- */ herr_t H5Fflush(hid_t object_id, H5F_scope_t scope) { H5F_t *f = NULL; H5G_t *grp = NULL; H5T_t *type = NULL; H5D_t *dset = NULL; H5A_t *attr = NULL; H5G_entry_t *ent = NULL; herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_API(H5Fflush, FAIL) H5TRACE2("e","iFs",object_id,scope); switch (H5I_get_type(object_id)) { case H5I_FILE: if (NULL==(f=H5I_object(object_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier") break; case H5I_GROUP: if (NULL==(grp=H5I_object(object_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid group identifier") ent = H5G_entof(grp); break; case H5I_DATATYPE: if (NULL==(type=H5I_object(object_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid type identifier") ent = H5T_entof(type); break; case H5I_DATASET: if (NULL==(dset=H5I_object(object_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier") ent = H5D_entof(dset); break; case H5I_ATTR: if (NULL==(attr=H5I_object(object_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid attribute identifier") ent = H5A_entof(attr); break; default: HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") } if (!f) { if (!ent) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "object is not assocated with a file") f = ent->file; } if (!f) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "object is not associated with a file") /* Flush the file */ if (H5F_flush(f, H5AC_dxpl_id, scope, H5F_FLUSH_NONE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "flush failed") done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_read_superblock * * Purpose: Reads the superblock from the file or from the BUF. If * ADDR is a valid address, then it reads it from the file. * If not, then BUF must be non-NULL for it to read from the * BUF. * * Return: Success: SUCCEED * Failure: FAIL * * Programmer: Bill Wendling * wendling@ncsa.uiuc.edu * Sept 12, 2003 * * Modifications: * *------------------------------------------------------------------------- */ static herr_t H5F_read_superblock(H5F_t *f, hid_t dxpl_id, H5G_entry_t *root_ent, haddr_t addr, uint8_t *buf, size_t buf_size) { haddr_t stored_eoa; /*relative end-of-addr in file */ haddr_t eof; /*end of file address */ uint8_t *q; /*ptr into temp I/O buffer */ size_t sizeof_addr = 0; size_t sizeof_size = 0; const size_t fixed_size = 24; /*fixed sizeof superblock */ unsigned sym_leaf_k = 0; size_t variable_size; /*variable sizeof superblock */ unsigned btree_k[H5B_NUM_BTREE_ID]; /* B-tree internal node 'K' values */ H5F_file_t *shared = NULL; /* shared part of `file' */ H5FD_t *lf = NULL; /* file driver part of `shared' */ uint8_t *p; /* Temporary pointer into encoding buffers */ uint8_t *start_p; /* Start of encoding buffers */ unsigned i; /* Index variable */ unsigned chksum; /* Checksum temporary variable */ size_t driver_size; /* Size of driver info block, in bytes */ char driver_name[9]; /* Name of driver, for driver info block */ unsigned super_vers; /* Super block version */ unsigned freespace_vers; /* Freespace info version */ unsigned obj_dir_vers; /* Object header info version */ unsigned share_head_vers; /* Shared header info version */ uint8_t sbuf[H5F_SUPERBLOCK_SIZE]; /* Local buffer */ H5P_genplist_t *c_plist; /* File creation property list */ herr_t ret_value = SUCCEED; /* Decoding */ FUNC_ENTER_NOAPI(H5F_read_superblock, FAIL) /* Short cuts */ shared = f->shared; lf = shared->lf; /* Get the shared file creation property list */ if (NULL == (c_plist = H5I_object(shared->fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") /* Read the superblock if it hasn't been read before. */ if (addr == HADDR_UNDEF) { if (HADDR_UNDEF == (shared->super_addr=H5F_locate_signature(lf,dxpl_id))) HGOTO_ERROR(H5E_FILE, H5E_NOTHDF5, FAIL, "unable to find file signature") } else { shared->super_addr = addr; } if (!buf) { start_p = p = sbuf; buf_size=sizeof(sbuf); if (H5FD_set_eoa(lf, shared->super_addr + fixed_size) < 0 || H5FD_read(lf, H5FD_MEM_SUPER, dxpl_id, shared->super_addr, fixed_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_READERROR, FAIL, "unable to read superblock") } else { start_p = p = buf; } /* Signature, already checked */ p += H5F_SIGNATURE_LEN; /* Superblock version */ super_vers = *p++; if (super_vers > HDF5_SUPERBLOCK_VERSION_MAX) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad superblock version number") if (H5P_set(c_plist, H5F_CRT_SUPER_VERS_NAME, &super_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set superblock version") /* Freespace version */ freespace_vers = *p++; if (HDF5_FREESPACE_VERSION != freespace_vers) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad free space version number") if (H5P_set(c_plist, H5F_CRT_FREESPACE_VERS_NAME, &freespace_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to free space version") /* Root group version number */ obj_dir_vers = *p++; if (HDF5_OBJECTDIR_VERSION != obj_dir_vers) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad object directory version number") if (H5P_set(c_plist, H5F_CRT_OBJ_DIR_VERS_NAME, &obj_dir_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set object directory version") /* Skip over reserved byte */ p++; /* Shared header version number */ share_head_vers = *p++; if (HDF5_SHAREDHEADER_VERSION != share_head_vers) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad shared-header format version number") if (H5P_set(c_plist, H5F_CRT_SHARE_HEAD_VERS_NAME, &share_head_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set shared-header format version") /* Size of file addresses */ sizeof_addr = *p++; if (sizeof_addr != 2 && sizeof_addr != 4 && sizeof_addr != 8 && sizeof_addr != 16 && sizeof_addr != 32) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad byte number in an address") if (H5P_set(c_plist, H5F_CRT_ADDR_BYTE_NUM_NAME,&sizeof_addr) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set byte number in an address") shared->sizeof_addr = sizeof_addr; /* Keep a local copy also */ /* Size of file sizes */ sizeof_size = *p++; if (sizeof_size != 2 && sizeof_size != 4 && sizeof_size != 8 && sizeof_size != 16 && sizeof_size != 32) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "bad byte number for object size") if (H5P_set(c_plist, H5F_CRT_OBJ_BYTE_NUM_NAME, &sizeof_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set byte number for object size") shared->sizeof_size = sizeof_size; /* Keep a local copy also */ /* Skip over reserved byte */ p++; /* Various B-tree sizes */ UINT16DECODE(p, sym_leaf_k); if (sym_leaf_k < 1) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, FAIL, "bad symbol table leaf node 1/2 rank") if (H5P_set(c_plist, H5F_CRT_SYM_LEAF_NAME, &sym_leaf_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set rank for symbol table leaf nodes") shared->sym_leaf_k = sym_leaf_k; /* Keep a local copy also */ /* Need 'get' call to set other array values */ if (H5P_get(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get rank for btree internal nodes") UINT16DECODE(p, btree_k[H5B_SNODE_ID]); if (btree_k[H5B_SNODE_ID] < 1) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, FAIL, "bad 1/2 rank for btree internal nodes") /* * Delay setting the value in the property list until we've checked * for the indexed storage B-tree internal 'K' value later. */ /* File consistency flags. Not really used yet */ UINT32DECODE(p, shared->consist_flags); assert(((size_t)(p - start_p)) == fixed_size); /* Decode the variable-length part of the superblock... */ variable_size = (super_vers>0 ? 4 : 0) + /* Potential indexed storage B-tree internal 'K' value */ H5F_SIZEOF_ADDR(f) + /*base addr*/ H5F_SIZEOF_ADDR(f) + /*global free list*/ H5F_SIZEOF_ADDR(f) + /*end-of-address*/ H5F_SIZEOF_ADDR(f) + /*reserved address*/ H5G_SIZEOF_ENTRY(f); /*root group ptr*/ assert(fixed_size + variable_size <= buf_size); /* The buffer (buf) is either passed in or the "local_buf" variable now */ if(!buf) { if (H5FD_set_eoa(lf, shared->super_addr + fixed_size+variable_size) < 0 || H5FD_read(lf, H5FD_MEM_SUPER, dxpl_id, shared->super_addr + fixed_size, variable_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to read superblock") } /* end if */ /* * If the superblock version # is greater than 0, read in the indexed * storage B-tree internal 'K' value */ if (super_vers > 0) { UINT16DECODE(p, btree_k[H5B_ISTORE_ID]); p += 2; /* reserved */ } else { btree_k[H5B_ISTORE_ID] = HDF5_BTREE_ISTORE_IK_DEF; } /* Set the B-tree internal node values, etc */ if (H5P_set(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set rank for btree internal nodes") HDmemcpy(shared->btree_k, btree_k, sizeof(unsigned) * H5B_NUM_BTREE_ID); /* Keep a local copy also */ H5F_addr_decode(f, (const uint8_t **)&p, &shared->base_addr/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &shared->freespace_addr/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &stored_eoa/*out*/); H5F_addr_decode(f, (const uint8_t **)&p, &shared->driver_addr/*out*/); if (H5G_ent_decode(f, (const uint8_t **)&p, root_ent/*out*/) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to read root symbol entry") /* * Check if superblock address is different from base address and * adjust base address and "end of address" address if so. */ if (!H5F_addr_eq(shared->super_addr,shared->base_addr)) { /* Check if the superblock moved earlier in the file */ if (H5F_addr_lt(shared->super_addr, shared->base_addr)) stored_eoa -= (shared->base_addr - shared->super_addr); else /* The superblock moved later in the file */ stored_eoa += (shared->super_addr - shared->base_addr); shared->base_addr = shared->super_addr; } /* end if */ /* Compute super block checksum */ assert(sizeof(chksum) == sizeof(shared->super_chksum)); for (q = (uint8_t *)&chksum, chksum = 0, i = 0; i < fixed_size + variable_size; ++i) q[i % sizeof(shared->super_chksum)] ^= start_p[i]; /* Set the super block checksum */ shared->super_chksum = chksum; /* Decode the optional driver information block */ if (H5F_addr_defined(shared->driver_addr)) { haddr_t drv_addr = shared->base_addr + shared->driver_addr; uint8_t dbuf[H5F_DRVINFOBLOCK_SIZE]; /* Local buffer */ size_t dbuf_size; /* Size available for driver info */ const uint8_t *driver_p; /* Remember beginning of driver info block */ if(!buf) { driver_p = p = dbuf; dbuf_size=sizeof(dbuf); if (H5FD_set_eoa(lf, drv_addr + 16) < 0 || H5FD_read(lf, H5FD_MEM_SUPER, dxpl_id, drv_addr, 16, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to read driver information block") } /* end if */ else { driver_p = p; dbuf_size=buf_size-(p-start_p); } /* end else */ /* Version number */ if (HDF5_DRIVERINFO_VERSION != *p++) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "bad driver information block version number") p += 3; /* reserved */ /* Driver info size */ UINT32DECODE(p, driver_size); /* Driver name and/or version */ HDstrncpy(driver_name, (const char *)p, 8); driver_name[8] = '\0'; p += 8; /* advance past name/version */ /* Read driver information and decode */ assert((driver_size + 16) <= dbuf_size); if(!buf) { if (H5FD_set_eoa(lf, drv_addr + 16 + driver_size) < 0 || H5FD_read(lf, H5FD_MEM_SUPER, dxpl_id, drv_addr+16, driver_size, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to read file driver information") } /* end if */ if (H5FD_sb_decode(lf, driver_name, p) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to decode driver information") /* Compute driver info block checksum */ assert(sizeof(chksum) == sizeof(shared->drvr_chksum)); for (q = (uint8_t *)&chksum, chksum = 0, i = 0; i < (driver_size + 16); ++i) q[i % sizeof(shared->drvr_chksum)] ^= driver_p[i]; /* Set the driver info block checksum */ shared->drvr_chksum = chksum; } /* end if */ /* * The user-defined data is the area of the file before the base * address. */ if (H5P_set(c_plist, H5F_CRT_USER_BLOCK_NAME, &shared->base_addr) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set usr block size") /* * Make sure that the data is not truncated. One case where this is * possible is if the first file of a family of files was opened * individually. */ if (HADDR_UNDEF == (eof = H5FD_get_eof(lf))) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to determine file size") #ifdef H5_HAVE_FPHDF5 if (!H5FD_is_fphdf5_driver(lf) || H5FD_fphdf5_is_captain(lf)) #endif /* !H5_HAVE_FPHDF5 */ if (eof < stored_eoa) HGOTO_ERROR(H5E_FILE, H5E_TRUNCATED, FAIL, "truncated file") /* * Tell the file driver how much address space has already been * allocated so that it knows how to allocate additional memory. */ if (H5FD_set_eoa(lf, stored_eoa) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to set end-of-address marker for file") done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_init_superblock * * Purpose: Allocates the superblock for the file and initializes * information about the superblock in memory. Does not write * any superblock information to the file. * * Return: Success: SUCCEED * Failure: FAIL * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Sept 15, 2003 * * Modifications: * *------------------------------------------------------------------------- */ static hsize_t H5F_init_superblock(H5F_t *f, hid_t dxpl_id) { hsize_t userblock_size = 0; /* Size of userblock, in bytes */ size_t superblock_size; /* Size of superblock, in bytes */ size_t driver_size; /* Size of driver info block (bytes)*/ unsigned super_vers; /* Super block version */ haddr_t addr; /* Address of superblock */ H5P_genplist_t *plist; /* Property list */ hsize_t ret_value; /* Encoding */ FUNC_ENTER_NOAPI(H5F_init_superblock, UFAIL) /* Get the shared file creation property list */ if (NULL == (plist = H5I_object(f->shared->fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, UFAIL, "not a property list") /* * The superblock starts immediately after the user-defined * header, which we have already insured is a proper size. The * base address is set to the same thing as the superblock for * now. */ if(H5P_get(plist, H5F_CRT_USER_BLOCK_NAME, &userblock_size) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, UFAIL, "unable to get user block size") f->shared->super_addr = userblock_size; f->shared->base_addr = f->shared->super_addr; f->shared->consist_flags = 0x03; /* Grab superblock version from property list */ if (H5P_get(plist, H5F_CRT_SUPER_VERS_NAME, &super_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, UFAIL, "unable to get super block version") /* Compute the size of the superblock */ superblock_size=H5F_SIGNATURE_LEN /* Signature length (8 bytes) */ + 16 /* Length of required fixed-size portion */ + ((super_vers>0) ? 4 : 0) /* Version specific fixed-size portion */ + 4 * H5F_sizeof_addr(f) /* Variable-sized addresses */ + H5G_SIZEOF_ENTRY(f); /* Size of root group symbol table entry */ /* Compute the size of the driver information block. */ H5_ASSIGN_OVERFLOW(driver_size, H5FD_sb_size(f->shared->lf), hsize_t, size_t); if (driver_size > 0) driver_size += 16; /* Driver block header */ /* * Allocate space for the userblock, superblock, and driver info * block. We do it with one allocation request because the * userblock and superblock need to be at the beginning of the * file and only the first allocation request is required to * return memory at format address zero. */ H5_CHECK_OVERFLOW(f->shared->base_addr, haddr_t, hsize_t); addr = H5FD_alloc(f->shared->lf, H5FD_MEM_SUPER, dxpl_id, ((hsize_t)f->shared->base_addr + superblock_size + driver_size)); if (HADDR_UNDEF == addr) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, UFAIL, "unable to allocate file space for userblock and/or superblock") if (0 != addr) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, UFAIL, "file driver failed to allocate userblock and/or superblock at address zero") /* * The file driver information block begins immediately after the * superblock. */ if (driver_size > 0) f->shared->driver_addr = superblock_size; /* Return the size of the super block+driver info block */ ret_value=superblock_size+driver_size; done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_init_superblock() */ /*------------------------------------------------------------------------- * Function: H5F_write_superblock * * Purpose: Writes (and optionally allocates) the superblock for the file. * If BUF is non-NULL, then write the serialized superblock * information into it. It should be a buffer of size * H5F_SUPERBLOCK_SIZE + H5F_DRVINFOBLOCK_SIZE or larger. * * Return: Success: SUCCEED * Failure: FAIL * * Programmer: Bill Wendling * wendling@ncsa.uiuc.edu * Sept 12, 2003 * * Modifications: * *------------------------------------------------------------------------- */ static herr_t H5F_write_superblock(H5F_t *f, hid_t dxpl_id, uint8_t *buf) { uint8_t sbuf[H5F_SUPERBLOCK_SIZE]; /* Superblock encoding buffer */ uint8_t dbuf[H5F_DRVINFOBLOCK_SIZE];/* Driver info block encoding buffer*/ uint8_t *p = NULL; /* Ptr into encoding buffers */ unsigned i; /* Index variable */ unsigned chksum; /* Checksum temporary variable */ size_t superblock_size; /* Size of superblock, in bytes */ size_t driver_size; /* Size of driver info block (bytes)*/ char driver_name[9]; /* Name of driver, for driver info block */ unsigned super_vers; /* Super block version */ unsigned freespace_vers; /* Freespace info version */ unsigned obj_dir_vers; /* Object header info version */ unsigned share_head_vers; /* Shared header info version */ H5P_genplist_t *plist; /* Property list */ herr_t ret_value = SUCCEED; /* Encoding */ FUNC_ENTER_NOAPI(H5F_write_superblock, FAIL) /* Get the shared file creation property list */ if (NULL == (plist = H5I_object(f->shared->fcpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") /* Grab values from property list */ if (H5P_get(plist, H5F_CRT_SUPER_VERS_NAME, &super_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get super block version") if (H5P_get(plist, H5F_CRT_FREESPACE_VERS_NAME, &freespace_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get free space version") if (H5P_get(plist, H5F_CRT_OBJ_DIR_VERS_NAME, &obj_dir_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get object directory version") if (H5P_get(plist, H5F_CRT_SHARE_HEAD_VERS_NAME, &share_head_vers) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get shared-header format version") /* Encode the file super block */ p = sbuf; HDmemcpy(p, H5F_SIGNATURE, H5F_SIGNATURE_LEN); p += H5F_SIGNATURE_LEN; *p++ = (uint8_t)super_vers; *p++ = (uint8_t)freespace_vers; *p++ = (uint8_t)obj_dir_vers; *p++ = 0; /* reserved*/ *p++ = (uint8_t)share_head_vers; assert (H5F_SIZEOF_ADDR(f) <= 255); *p++ = (uint8_t)H5F_SIZEOF_ADDR(f); assert (H5F_SIZEOF_SIZE(f) <= 255); *p++ = (uint8_t)H5F_SIZEOF_SIZE(f); *p++ = 0; /* reserved */ UINT16ENCODE(p, f->shared->sym_leaf_k); UINT16ENCODE(p, f->shared->btree_k[H5B_SNODE_ID]); UINT32ENCODE(p, f->shared->consist_flags); /* * Versions of the superblock >0 have the indexed storage B-tree * internal 'K' value stored */ if (super_vers > 0) { UINT16ENCODE(p, f->shared->btree_k[H5B_ISTORE_ID]); *p++ = 0; /*reserved */ *p++ = 0; /*reserved */ } H5F_addr_encode(f, &p, f->shared->base_addr); H5F_addr_encode(f, &p, f->shared->freespace_addr); H5F_addr_encode(f, &p, H5FD_get_eoa(f->shared->lf)); H5F_addr_encode(f, &p, f->shared->driver_addr); if(H5G_ent_encode(f, &p, H5G_entof(f->shared->root_grp))<0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to encode root group information") H5_ASSIGN_OVERFLOW(superblock_size, p - sbuf, int, size_t); /* Double check we didn't overrun the block (unlikely) */ assert(superblock_size <= sizeof(sbuf)); /* Encode the driver information block. */ H5_ASSIGN_OVERFLOW(driver_size, H5FD_sb_size(f->shared->lf), hsize_t, size_t); if (driver_size > 0) { driver_size += 16; /* Driver block header */ /* Double check we didn't overrun the block (unlikely) */ assert(driver_size <= sizeof(dbuf)); /* Encode the driver information block */ p = dbuf; *p++ = HDF5_DRIVERINFO_VERSION; /* Version */ *p++ = 0; /* reserved */ *p++ = 0; /* reserved */ *p++ = 0; /* reserved */ /* Driver info size, excluding header */ UINT32ENCODE(p, driver_size - 16); /* Encode driver-specific data */ if (H5FD_sb_encode(f->shared->lf, driver_name, dbuf + 16) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to encode driver information") /* Driver name */ HDmemcpy(dbuf + 8, driver_name, 8); } /* end if */ /* Compute super block checksum */ assert(sizeof(chksum) == sizeof(f->shared->super_chksum)); for (p = (uint8_t *)&chksum, chksum = 0, i = 0; i < superblock_size; ++i) p[i % sizeof(f->shared->super_chksum)] ^= sbuf[i]; /* Compare with current checksums */ if (chksum != f->shared->super_chksum) { /* Write superblock */ if (H5FD_write(f->shared->lf, H5FD_MEM_SUPER, dxpl_id, f->shared->super_addr, superblock_size, sbuf) < 0) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to write superblock") /* Update checksum information if different */ f->shared->super_chksum = chksum; } /* Check for driver info block */ if (HADDR_UNDEF != f->shared->driver_addr) { /* Compute driver info block checksum */ assert(sizeof(chksum) == sizeof(f->shared->drvr_chksum)); for (p = (uint8_t *)&chksum, chksum = 0, i = 0; i < driver_size; ++i) p[i % sizeof(f->shared->drvr_chksum)] ^= dbuf[i]; /* Compare with current checksums */ if (chksum != f->shared->drvr_chksum) { /* Write driver information block */ if (H5FD_write(f->shared->lf, H5FD_MEM_SUPER, dxpl_id, f->shared->base_addr + f->shared->driver_addr, driver_size, dbuf) < 0) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to write driver information block") /* Update checksum information if different */ f->shared->drvr_chksum = chksum; } /* end if */ } /* end if */ /* Update the user's buffer, if given */ if (buf) { HDmemcpy(buf, sbuf, superblock_size); HDmemcpy(&buf[superblock_size], dbuf, driver_size); } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_flush * * Purpose: Flushes (and optionally invalidates) cached data plus the * file super block. If the logical file size field is zero * then it is updated to be the length of the super block. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * matzke@llnl.gov * Aug 29 1997 * * Modifications: * rky 1998-08-28 * Only p0 writes metadata to disk. * * Robb Matzke, 1998-10-16 * Added the `scope' argument to indicate what should be * flushed. If the value is H5F_SCOPE_GLOBAL then the entire * virtual file is flushed; a value of H5F_SCOPE_LOCAL means * that only the specified file is flushed. A value of * H5F_SCOPE_DOWN means flush the specified file and all * children. * * Robb Matzke, 1999-08-02 * If ALLOC_ONLY is non-zero then all this function does is * allocate space for the userblock and superblock. Also * rewritten to use the virtual file layer. * * Robb Matzke, 1999-08-16 * The driver information block is encoded and either allocated * or written to disk. * * Raymond Lu, 2001-10-14 * Changed to new generic property list. * * Quincey Koziol, 2002-05-20 * Added 'closing' parameter * * Quincey Koziol, 2002-06-05 * Added boot block & driver info block checksumming, to avoid * writing them out when they haven't changed. * * Quincey Koziol, 2002-06-06 * Return the remainders of the metadata & "small data" blocks to * the free list of blocks for the file. * * Bill Wendling, 2003-03-18 * Modified the flags being passed in to be one flag instead * of several. * *------------------------------------------------------------------------- */ static herr_t H5F_flush(H5F_t *f, hid_t dxpl_id, H5F_scope_t scope, unsigned flags) { unsigned nerrors = 0; /* Errors from nested flushes */ unsigned i; /* Index variable */ herr_t ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5F_flush) /* Sanity check arguments */ assert(f); /* * Nothing to do if the file is read only. This determination is * made at the shared open(2) flags level, implying that opening a * file twice, once for read-only and once for read-write, and then * calling H5F_flush() with the read-only handle, still causes data * to be flushed. */ if (0 == (H5F_ACC_RDWR & f->shared->flags)) HGOTO_DONE(SUCCEED) /* Flush other stuff depending on scope */ if (H5F_SCOPE_GLOBAL == scope) { while (f->mtab.parent) f = f->mtab.parent; scope = H5F_SCOPE_DOWN; } if (H5F_SCOPE_DOWN == scope) for (i = 0; i < f->mtab.nmounts; i++) if (H5F_flush(f->mtab.child[i].file, dxpl_id, scope, flags) < 0) nerrors++; /* Flush any cached dataset storage raw data */ if (H5D_flush(f, dxpl_id, flags) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush dataset cache") /* * If we are invalidating everything (which only happens just before * the file closes), release the unused portion of the metadata and * "small data" blocks back to the free lists in the file. */ if (flags & H5F_FLUSH_INVALIDATE) { #ifdef H5_HAVE_FPHDF5 /* * If this is not the SAP, then we want to send a "free" * command to the SAP to free up the EOMA and EOSDA * information. This might also update the EOA information on * the clients... */ if (H5FD_is_fphdf5_driver(f->shared->lf) && !H5FD_fphdf5_is_sap(f->shared->lf)) { unsigned req_id = 0; H5FP_status_t status = H5FP_STATUS_OK; /* Send the request to the SAP */ if (H5FP_request_update_eoma_eosda(f->shared->lf, &req_id, &status) != SUCCEED) /* FIXME: Should we check the "status" variable here? */ HGOTO_ERROR(H5E_FPHDF5, H5E_CANTFREE, FAIL, "server couldn't free from file") } else { #endif /* H5_HAVE_FPHDF5 */ if (f->shared->lf->feature_flags & H5FD_FEAT_AGGREGATE_METADATA) { /* Return the unused portion of the metadata block to a free list */ if (f->shared->lf->eoma != 0) if (H5FD_free(f->shared->lf, H5FD_MEM_DEFAULT, dxpl_id, f->shared->lf->eoma, f->shared->lf->cur_meta_block_size) < 0) HGOTO_ERROR(H5E_VFL, H5E_CANTFREE, FAIL, "can't free metadata block") /* Reset metadata block information, just in case */ f->shared->lf->eoma=0; f->shared->lf->cur_meta_block_size=0; } /* end if */ if (f->shared->lf->feature_flags & H5FD_FEAT_AGGREGATE_SMALLDATA) { /* Return the unused portion of the "small data" block to a free list */ if (f->shared->lf->eosda != 0) if (H5FD_free(f->shared->lf, H5FD_MEM_DRAW, dxpl_id, f->shared->lf->eosda, f->shared->lf->cur_sdata_block_size) < 0) HGOTO_ERROR(H5E_VFL, H5E_CANTFREE, FAIL, "can't free 'small data' block") /* Reset "small data" block information, just in case */ f->shared->lf->eosda=0; f->shared->lf->cur_sdata_block_size=0; } /* end if */ #ifdef H5_HAVE_FPHDF5 } #endif /* H5_HAVE_FPHDF5 */ } /* end if */ /* flush (and invalidate) the entire meta data cache */ /* * FIXME: This should be CLEAR_ONLY for non-captain processes. * Need to fix the H5G_mkroot() call so that only the captain * allocates object headers (calls the H5O_init function...via a * lot of other functions first).... */ if (H5AC_flush(f, dxpl_id, NULL, HADDR_UNDEF, flags & (H5F_FLUSH_INVALIDATE | H5F_FLUSH_CLEAR_ONLY)) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush meta data cache") /* Write the superblock to disk */ if (H5F_write_superblock(f, dxpl_id, NULL) != SUCCEED) HGOTO_ERROR(H5E_CACHE, H5E_WRITEERROR, FAIL, "unable to superblock to file") /* Flush file buffers to disk. */ if (H5FD_flush(f->shared->lf, dxpl_id, (unsigned)((flags & H5F_FLUSH_CLOSING) > 0)) < 0) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "low level flush failed") /* Check flush errors for children - errors are already on the stack */ ret_value = (nerrors ? FAIL : SUCCEED); done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_flush() */ /*------------------------------------------------------------------------- * Function: H5F_close * * Purpose: Closes a file or causes the close operation to be pended. * This function is called two ways: from the API it gets called * by H5Fclose->H5I_dec_ref->H5F_close when H5I_dec_ref() * decrements the file ID reference count to zero. The file ID * is removed from the H5I_FILE group by H5I_dec_ref() just * before H5F_close() is called. If there are open object * headers then the close is pended by moving the file to the * H5I_FILE_CLOSING ID group (the f->closing contains the ID * assigned to file). * * This function is also called directly from H5O_close() when * the last object header is closed for the file and the file * has a pending close. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, September 23, 1997 * * Modifications: * Robb Matzke, 1998-10-14 * Nothing happens unless the H5F_t reference count is one (the * file is flushed anyway). The reference count is decremented * by H5F_dest(). * * Robb Matzke, 1999-08-02 * Modified to use the virtual file layer. * * Bill Wendling, 2003-03-18 * Modified H5F_flush call to take one flag instead of * several Boolean flags. * *------------------------------------------------------------------------- */ static herr_t H5F_close(H5F_t *f) { H5F_close_degree_t fc_degree; /* What action to take when closing the last file ID for a file */ unsigned closing=0; /* Indicate that the file will be closed */ unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5F_close, FAIL) assert(f->nrefs>0); /* * If this file is referenced more than once then just decrement the * count and return. */ if (f->nrefs>1) { /* Decrement reference counts */ if (H5F_dest(f, H5AC_dxpl_id)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file") HGOTO_DONE(SUCCEED) } /* end if */ /* Double-check that this file should be closed */ assert(1==f->nrefs); /* Get the close degree from the file */ fc_degree = f->shared->fc_degree; /* if close degree if "semi" and there are objects left open and we are * holding open the file with this file ID, fail now */ if(fc_degree==H5F_CLOSE_SEMI && f->nopen_objs>0 && f->shared->nrefs==1) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close file, there are objects still open") /* * Unmount and close each child before closing the current file. */ assert(NULL==f->mtab.parent); for (u=0; umtab.nmounts; u++) { f->mtab.child[u].file->mtab.parent = NULL; if(H5G_close(f->mtab.child[u].group)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "can't close child group") if(H5F_close(f->mtab.child[u].file)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close child file") } /* end if */ f->mtab.nmounts = 0; /* * Close file according to close degree: * * H5F_CLOSE_WEAK: if there are still objects open, wait until * they are all closed. * H5F_CLOSE_SEMI: if there are still objects open, return fail; * otherwise, close file. * H5F_CLOSE_STRONG: if there are still objects open, close them * first, then close file. */ switch(fc_degree) { case H5F_CLOSE_WEAK: /* * If object headers are still open then delay deletion of * resources until they have all been closed. Flush all * caches and update the object eader anyway so that failing toi * close all objects isn't a major problem. If the file is on * the H5I_FILE list then move it to the H5I_FILE_CLOSING list * instead. */ if (f->nopen_objs>0) { #ifdef H5F_DEBUG if (H5DEBUG(F)) { fprintf(H5DEBUG(F), "H5F: H5F_close(%s): %u object header%s still " "open (file close will complete when %s closed)\n", f->name, f->nopen_objs, 1 == f->nopen_objs?" is":"s are", 1 == f->nopen_objs?"that header is":"those headers are"); } #endif /* Register an ID for closing the file later */ if (!f->closing) f->closing = H5I_register(H5I_FILE_CLOSING, f); /* Invalidate file ID */ f->file_id = -1; HGOTO_DONE(SUCCEED) } else { if (f->closing) { #ifdef H5F_DEBUG if (H5DEBUG(F)) fprintf(H5DEBUG(F), "H5F: H5F_close: operation completing\n"); #endif } /* end if */ /* Indicate that the file will be closing */ closing=1; } /* end else */ break; case H5F_CLOSE_SEMI: if (f->nopen_objs>0) { #ifdef H5F_DEBUG if (H5DEBUG(F)) { fprintf(H5DEBUG(F), "H5F: H5F_close(%s): %u object header%s still " "open (file close will complete when %s closed)\n", f->name, f->nopen_objs, 1 == f->nopen_objs?" is":"s are", 1 == f->nopen_objs?"that header is":"those headers are"); } #endif /* Register an ID for closing the file later */ if (!f->closing) f->closing = H5I_register(H5I_FILE_CLOSING, f); /* Invalidate file ID */ f->file_id = -1; HGOTO_DONE(SUCCEED) } else { if (!f->closing && f->shared->nrefs>1) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close file, there are objects still open") /* Indicate that the file will be closing */ closing=1; } /* end else */ break; case H5F_CLOSE_STRONG: /* Force to close all opened objects in file */ while(f->nopen_objs > 0) { int obj_count; /* # of open objects */ hid_t objs[128]; /* Array of objects to close */ int i; /* Local index variable */ /* Get the list of IDs of open dataset objects */ while((obj_count=H5F_get_obj_ids(f, H5F_OBJ_DATASET, (sizeof(objs)/sizeof(objs[0])), objs))) { /* Try to close all the open objects */ for(i=0; ifile_id = -1; /* Only flush at this point if the file will be closed */ assert(closing); /* Dump debugging info */ #if H5C_COLLECT_CACHE_STATS H5AC_stats(f); #endif /* H5AC_COLLECT_CACHE_STATS */ /* Only try to flush the file if it was opened with write access */ if(f->intent&H5F_ACC_RDWR) { #ifdef H5_HAVE_FPHDF5 /* * We only want the captain to perform the flush of the metadata * to the file. */ if (!H5FD_is_fphdf5_driver(f->shared->lf) || H5FD_fphdf5_is_captain(f->shared->lf)) { #endif /* H5_HAVE_FPHDF5 */ /* Flush and destroy all caches */ if (H5F_flush(f, H5AC_dxpl_id, H5F_SCOPE_LOCAL, H5F_FLUSH_INVALIDATE | H5F_FLUSH_CLOSING) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush cache") #ifdef H5_HAVE_FPHDF5 } else { /* * If this isn't the captain process, flush but only clear * the flags. */ if (H5F_flush(f, H5AC_dxpl_id, H5F_SCOPE_LOCAL, H5F_FLUSH_INVALIDATE | H5F_FLUSH_CLOSING | H5F_FLUSH_CLEAR_ONLY) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush cache") } #endif /* H5_HAVE_FPHDF5 */ } /* end if */ /* * Destroy the H5F_t struct and decrement the reference count for the * shared H5F_file_t struct. If the reference count for the H5F_file_t * struct reaches zero then destroy it also. */ if (H5F_dest(f,H5AC_dxpl_id)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_close() */ /*------------------------------------------------------------------------- * Function: H5Fclose * * Purpose: This function closes the file specified by FILE_ID by * flushing all data to storage, and terminating access to the * file through FILE_ID. If objects (e.g., datasets, groups, * etc.) are open in the file then the underlying storage is not * closed until those objects are closed; however, all data for * the file and the open objects is flushed. * * Return: Success: Non-negative * * Failure: Negative * * Programmer: Robb Matzke * Saturday, February 20, 1999 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Fclose(hid_t file_id) { herr_t ret_value = SUCCEED; FUNC_ENTER_API(H5Fclose, FAIL) H5TRACE1("e","i",file_id); /* Check/fix arguments. */ if (NULL==H5I_object_verify(file_id,H5I_FILE)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file atom") /* * Decrement reference count on atom. When it reaches zero the file will * be closed. */ if (H5I_dec_ref (file_id)<0) HGOTO_ERROR (H5E_ATOM, H5E_CANTCLOSEFILE, FAIL, "decrementing file ID failed") done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_mount * * Purpose: Mount file CHILD onto the group specified by LOC and NAME, * using mount properties in PLIST. CHILD must not already be * mouted and must not be a mount ancestor of the mount-point. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, October 6, 1998 * * Modifications: * * Robb Matzke, 1998-10-14 * The reference count for the mounted H5F_t is incremented. * * Pedro Vicente, 22 Aug 2002 * Added `id to name' support. * *------------------------------------------------------------------------- */ static herr_t H5F_mount(H5G_entry_t *loc, const char *name, H5F_t *child, hid_t UNUSED plist_id, hid_t dxpl_id) { H5G_t *mount_point = NULL; /*mount point group */ H5G_entry_t *mp_ent = NULL; /*mount point symbol table entry*/ H5F_t *ancestor = NULL; /*ancestor files */ H5F_t *parent = NULL; /*file containing mount point */ unsigned lt, rt, md; /*binary search indices */ int cmp; /*binary search comparison value*/ H5G_entry_t *ent = NULL; /*temporary symbol table entry */ H5RS_str_t *name_r; /* Ref-counted version of name */ herr_t ret_value = SUCCEED; /*return value */ FUNC_ENTER_NOAPI_NOINIT(H5F_mount) assert(loc); assert(name && *name); assert(child); assert(TRUE==H5P_isa_class(plist_id,H5P_MOUNT)); /* * Check that the child isn't mounted, that the mount point exists, and * that the mount wouldn't introduce a cycle in the mount tree. */ if (child->mtab.parent) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "file is already mounted") if (NULL==(mount_point=H5G_open(loc, name, dxpl_id))) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount point not found") parent = H5G_fileof(mount_point); mp_ent = H5G_entof(mount_point); for (ancestor=parent; ancestor; ancestor=ancestor->mtab.parent) { if (ancestor==child) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount would introduce a cycle") } /* * Use a binary search to locate the position that the child should be * inserted into the parent mount table. At the end of this paragraph * `md' will be the index where the child should be inserted. */ lt = md = 0; rt=parent->mtab.nmounts; cmp = -1; while (ltmtab.child[md].group); cmp = H5F_addr_cmp(mp_ent->header, ent->header); if (cmp<0) { rt = md; } else if (cmp>0) { lt = md+1; } } if (cmp>0) md++; if (!cmp) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount point is already in use") /* Make room in the table */ if (parent->mtab.nmounts>=parent->mtab.nalloc) { unsigned n = MAX(16, 2*parent->mtab.nalloc); H5F_mount_t *x = H5MM_realloc(parent->mtab.child, n*sizeof(parent->mtab.child[0])); if (!x) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for mount table") parent->mtab.child = x; parent->mtab.nalloc = n; } /* Insert into table */ HDmemmove(parent->mtab.child+md+1, parent->mtab.child+md, (parent->mtab.nmounts-md)*sizeof(parent->mtab.child[0])); parent->mtab.nmounts++; parent->mtab.child[md].group = mount_point; parent->mtab.child[md].file = child; child->mtab.parent = parent; child->nrefs++; /* Search the open IDs and replace names for mount operation */ /* We pass H5G_UNKNOWN as object type; search all IDs */ name_r=H5RS_wrap(name); assert(name_r); if (H5G_replace_name( H5G_UNKNOWN, loc, name_r, NULL, NULL, NULL, OP_MOUNT )<0) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to replace name") if(H5RS_decr(name_r)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTDEC, FAIL, "unable to decrement name string") done: if (ret_value<0 && mount_point) if(H5G_close(mount_point)<0) HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "unable to close mounted group") FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_unmount * * Purpose: Unmount the child which is mounted at the group specified by * LOC and NAME or fail if nothing is mounted there. Neither * file is closed. * * Because the mount point is specified by name and opened as a * group, the H5G_namei() will resolve it to the root of the * mounted file, not the group where the file is mounted. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, October 6, 1998 * * Modifications: * * Robb Matzke, 1998-10-14 * The ref count for the child is decremented by calling H5F_close(). * * Pedro Vicente, 22 Aug 2002 * Added `id to name' support. * *------------------------------------------------------------------------- */ static herr_t H5F_unmount(H5G_entry_t *loc, const char *name, hid_t dxpl_id) { H5G_t *mounted = NULL; /*mount point group */ H5G_entry_t *mnt_ent = NULL; /*mounted symbol table entry */ H5F_t *child = NULL; /*mounted file */ H5F_t *parent = NULL; /*file where mounted */ H5G_entry_t *ent = NULL; /*temporary symbol table entry */ herr_t ret_value = FAIL; /*return value */ unsigned i; /*coutners */ unsigned lt, rt, md=0; /*binary search indices */ int cmp; /*binary search comparison value*/ FUNC_ENTER_NOAPI_NOINIT(H5F_unmount) assert(loc); assert(name && *name); /* * Get the mount point, or more precisely the root of the mounted file. * If we get the root group and the file has a parent in the mount tree, * then we must have found the mount point. */ if (NULL==(mounted=H5G_open(loc, name, dxpl_id))) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount point not found") child = H5G_fileof(mounted); mnt_ent = H5G_entof(mounted); ent = H5G_entof(child->shared->root_grp); if (child->mtab.parent && H5F_addr_eq(mnt_ent->header, ent->header)) { /* * We've been given the root group of the child. We do a reverse * lookup in the parent's mount table to find the correct entry. */ parent = child->mtab.parent; for (i=0; imtab.nmounts; i++) { if (parent->mtab.child[i].file==child) { /* Search the open IDs replace names to reflect unmount operation */ if (H5G_replace_name( H5G_UNKNOWN, mnt_ent, mnt_ent->user_path_r, NULL, NULL, NULL, OP_UNMOUNT )<0) HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to replace name ") /* Unmount the child */ parent->mtab.nmounts -= 1; if(H5G_close(parent->mtab.child[i].group)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "unable to close unmounted group") child->mtab.parent = NULL; if(H5F_close(child)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "unable to close unmounted file") HDmemmove(parent->mtab.child+i, parent->mtab.child+i+1, (parent->mtab.nmounts-i)* sizeof(parent->mtab.child[0])); ret_value = SUCCEED; } } assert(ret_value>=0); } else { /* * We've been given the mount point in the parent. We use a binary * search in the parent to locate the mounted file, if any. */ parent = child; /*we guessed wrong*/ lt = 0; rt = parent->mtab.nmounts; cmp = -1; while (ltmtab.child[md].group); cmp = H5F_addr_cmp(mnt_ent->header, ent->header); if (cmp<0) { rt = md; } else { lt = md+1; } } if (cmp) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "not a mount point") /* Unmount the child */ parent->mtab.nmounts -= 1; if(H5G_close(parent->mtab.child[md].group)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "unable to close unmounted group") parent->mtab.child[md].file->mtab.parent = NULL; if(H5F_close(parent->mtab.child[md].file)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "unable to close unmounted file") HDmemmove(parent->mtab.child+md, parent->mtab.child+md+1, (parent->mtab.nmounts-md)*sizeof(parent->mtab.child[0])); ret_value = SUCCEED; } done: if (mounted) if(H5G_close(mounted)<0 && ret_value>=0) HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "can't close group") FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_mountpoint * * Purpose: If ENT is a mount point then copy the entry for the root * group of the mounted file into ENT. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, October 6, 1998 * * Modifications: * * Pedro Vicente, 22 Aug 2002 * Added `id to name' support. * *------------------------------------------------------------------------- */ herr_t H5F_mountpoint(H5G_entry_t *find/*in,out*/) { H5F_t *parent = find->file; unsigned lt, rt, md=0; int cmp; H5G_entry_t *ent = NULL; herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5F_mountpoint, FAIL) assert(find); /* * The loop is necessary because we might have file1 mounted at the root * of file2, which is mounted somewhere in file3. */ do { /* * Use a binary search to find the potential mount point in the mount * table for the parent */ lt = 0; rt = parent->mtab.nmounts; cmp = -1; while (ltmtab.child[md].group); cmp = H5F_addr_cmp(find->header, ent->header); if (cmp<0) { rt = md; } else { lt = md+1; } } /* Copy root info over to ENT */ if (0==cmp) { /* Get the entry for the root group in the child's file */ ent = H5G_entof(parent->mtab.child[md].file->shared->root_grp); /* Don't lose the user path of the group when we copy the root group's entry */ if(H5G_ent_copy(find,ent,H5G_COPY_LIMITED)<0) HGOTO_ERROR(H5E_FILE, H5E_CANTCOPY, FAIL, "unable to copy group entry") /* Switch to child's file */ parent = ent->file; } } while (!cmp); done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_has_mount * * Purpose: Check if a file has mounted files within it. * * Return: Success: TRUE/FALSE * Failure: Negative * * Programmer: Quincey Koziol * Thursday, January 2, 2002 * * Modifications: * *------------------------------------------------------------------------- */ htri_t H5F_has_mount(const H5F_t *file) { htri_t ret_value; /* Return value */ FUNC_ENTER_NOAPI(H5F_has_mount, FAIL) assert(file); if(file->mtab.nmounts>0) ret_value=TRUE; else ret_value=FALSE; done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_has_mount() */ /*------------------------------------------------------------------------- * Function: H5F_is_mount * * Purpose: Check if a file is mounted within another file. * * Return: Success: TRUE/FALSE * Failure: Negative * * Programmer: Quincey Koziol * Thursday, January 2, 2002 * * Modifications: * *------------------------------------------------------------------------- */ htri_t H5F_is_mount(const H5F_t *file) { htri_t ret_value; /* Return value */ FUNC_ENTER_NOAPI(H5F_is_mount, FAIL) assert(file); if(file->mtab.parent!=NULL) ret_value=TRUE; else ret_value=FALSE; done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_is_mount() */ /*------------------------------------------------------------------------- * Function: H5Fmount * * Purpose: Mount file CHILD_ID onto the group specified by LOC_ID and * NAME using mount properties PLIST_ID. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, October 6, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Fmount(hid_t loc_id, const char *name, hid_t child_id, hid_t plist_id) { H5G_entry_t *loc = NULL; H5F_t *child = NULL; herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_API(H5Fmount, FAIL) H5TRACE4("e","isii",loc_id,name,child_id,plist_id); /* Check arguments */ if (NULL==(loc=H5G_loc(loc_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if (!name || !*name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") if (NULL==(child=H5I_object_verify(child_id,H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") if(H5P_DEFAULT == plist_id) plist_id = H5P_MOUNT_DEFAULT; else if(TRUE != H5P_isa_class(plist_id, H5P_MOUNT)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not property list") /* Do the mount */ if (H5F_mount(loc, name, child, plist_id, H5AC_dxpl_id)<0) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to mount file") done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5Funmount * * Purpose: Given a mount point, dissassociate the mount point's file * from the file mounted there. Do not close either file. * * The mount point can either be the group in the parent or the * root group of the mounted file (both groups have the same * name). If the mount point was opened before the mount then * it's the group in the parent, but if it was opened after the * mount then it's the root group of the child. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Tuesday, October 6, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5Funmount(hid_t loc_id, const char *name) { H5G_entry_t *loc = NULL; herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_API(H5Funmount, FAIL) H5TRACE2("e","is",loc_id,name); /* Check args */ if (NULL==(loc=H5G_loc(loc_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if (!name || !*name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") /* Unmount */ if (H5F_unmount(loc, name, H5AC_dxpl_id)<0) HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "unable to unmount file") done: FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5Freopen * * Purpose: Reopen a file. The new file handle which is returned points * to the same file as the specified file handle. Both handles * share caches and other information. The only difference * between the handles is that the new handle is not mounted * anywhere and no files are mounted on it. * * Return: Success: New file ID * * Failure: FAIL * * Programmer: Robb Matzke * Friday, October 16, 1998 * * Modifications: * Quincey Koziol, May 14, 2002 * Keep old file's read/write intent in reopened file. * *------------------------------------------------------------------------- */ hid_t H5Freopen(hid_t file_id) { H5F_t *old_file=NULL; H5F_t *new_file=NULL; hid_t ret_value; FUNC_ENTER_API(H5Freopen, FAIL) H5TRACE1("i","i",file_id); if (NULL==(old_file=H5I_object_verify(file_id, H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") /* Get a new "top level" file struct, sharing the same "low level" file struct */ if (NULL==(new_file=H5F_new(old_file->shared, H5P_FILE_CREATE_DEFAULT, H5P_FILE_ACCESS_DEFAULT))) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to reopen file") /* Keep old file's read/write intent in new file */ new_file->intent=old_file->intent; if ((ret_value=H5I_register(H5I_FILE, new_file))<0) HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file handle") /* Keep this ID in file object structure */ new_file->file_id = ret_value; done: if (ret_value<0 && new_file) if(H5F_close(new_file)<0) HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close file") FUNC_LEAVE_API(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_get_intent * * Purpose: Quick and dirty routine to retrieve the file's 'intent' flags * (Mainly added to stop non-file routines from poking about in the * H5F_t data structure) * * Return: 'intent' on success/abort on failure (shouldn't fail) * * Programmer: Quincey Koziol * September 29, 2000 * * Modifications: * *------------------------------------------------------------------------- */ unsigned H5F_get_intent(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_get_intent) assert(f); FUNC_LEAVE_NOAPI(f->intent) } /*------------------------------------------------------------------------- * Function: H5F_sizeof_addr * * Purpose: Quick and dirty routine to retrieve the size of the file's size_t * (Mainly added to stop non-file routines from poking about in the * H5F_t data structure) * * Return: 'sizeof_addr' on success/abort on failure (shouldn't fail) * * Programmer: Quincey Koziol * September 29, 2000 * * Modifications: * * Raymond Lu, Oct 14, 2001 * Changed to generic property list. * *------------------------------------------------------------------------- */ size_t H5F_sizeof_addr(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_sizeof_addr) assert(f); assert(f->shared); FUNC_LEAVE_NOAPI(f->shared->sizeof_addr) } /*------------------------------------------------------------------------- * Function: H5F_sizeof_size * * Purpose: Quick and dirty routine to retrieve the size of the file's off_t * (Mainly added to stop non-file routines from poking about in the * H5F_t data structure) * * Return: 'sizeof_size' on success/abort on failure (shouldn't fail) * * Programmer: Quincey Koziol * September 29, 2000 * * Modifications: * * Raymond Lu, Oct 14, 2001 * Changed to the new generic property list. * *------------------------------------------------------------------------- */ size_t H5F_sizeof_size(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_sizeof_size) assert(f); assert(f->shared); FUNC_LEAVE_NOAPI(f->shared->sizeof_size) } /*------------------------------------------------------------------------- * Function: H5F_sym_leaf_k * * Purpose: Replaced a macro to retrieve the symbol table leaf size, * now that the generic properties are being used to store * the values. * * Return: Success: Non-negative, and the symbol table leaf size is * returned. * * Failure: Negative (should not happen) * * Programmer: Raymond Lu * slu@ncsa.uiuc.edu * Oct 14 2001 * * Modifications: * Quincey Koziol, 2001-10-15 * Added this header and removed unused ret_value variable. *------------------------------------------------------------------------- */ unsigned H5F_sym_leaf_k(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_sym_leaf_k) assert(f); assert(f->shared); FUNC_LEAVE_NOAPI(f->shared->sym_leaf_k) } /*------------------------------------------------------------------------- * Function: H5F_Kvalue * * Purpose: Replaced a macro to retrieve a B-tree key value for a certain * type, now that the generic properties are being used to store * the B-tree values. * * Return: Success: Non-negative, and the B-tree key value is * returned. * * Failure: Negative (should not happen) * * Programmer: Raymond Lu * slu@ncsa.uiuc.edu * Oct 14 2001 * * Modifications: * Quincey Koziol, 2001-10-15 * Added this header and removed unused ret_value variable. *------------------------------------------------------------------------- */ unsigned H5F_Kvalue(const H5F_t *f, const H5B_class_t *type) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_Kvalue) assert(f); assert(f->shared); assert(type); FUNC_LEAVE_NOAPI(f->shared->btree_k[type->id]) } /* end H5F_Kvalue() */ /*------------------------------------------------------------------------- * Function: H5F_rdcc_nelmts * * Purpose: Replaced a macro to retrieve the raw data cache number of elments, * now that the generic properties are being used to store * the values. * * Return: Success: Non-negative, and the raw data cache number of * of elemnts is returned. * * Failure: Negative (should not happen) * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Jun 1 2004 * * Modifications: * *------------------------------------------------------------------------- */ size_t H5F_rdcc_nelmts(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_rdcc_nelmts) assert(f); assert(f->shared); FUNC_LEAVE_NOAPI(f->shared->rdcc_nelmts) } /* end H5F_rdcc_nelmts() */ /*------------------------------------------------------------------------- * Function: H5F_rdcc_nbytes * * Purpose: Replaced a macro to retrieve the raw data cache number of bytes, * now that the generic properties are being used to store * the values. * * Return: Success: Non-negative, and the raw data cache number of * of bytes is returned. * * Failure: Negative (should not happen) * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Jun 1 2004 * * Modifications: * *------------------------------------------------------------------------- */ size_t H5F_rdcc_nbytes(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_rdcc_nbytes) assert(f); assert(f->shared); FUNC_LEAVE_NOAPI(f->shared->rdcc_nbytes) } /* end H5F_rdcc_nbytes() */ /*------------------------------------------------------------------------- * Function: H5F_rdcc_w0 * * Purpose: Replaced a macro to retrieve the raw data cache 'w0' value * now that the generic properties are being used to store * the values. * * Return: Success: Non-negative, and the raw data cache 'w0' value * is returned. * * Failure: Negative (should not happen) * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Jun 2 2004 * * Modifications: * *------------------------------------------------------------------------- */ double H5F_rdcc_w0(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_rdcc_w0) assert(f); assert(f->shared); FUNC_LEAVE_NOAPI(f->shared->rdcc_w0) } /* end H5F_rdcc_w0() */ /*------------------------------------------------------------------------- * Function: H5F_has_feature * * Purpose: Check if a file has a particular feature enabled * * Return: Success: Non-negative - TRUE or FALSE * Failure: Negative (should not happen) * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * May 31 2004 * * Modifications: * *------------------------------------------------------------------------- */ hbool_t H5F_has_feature(const H5F_t *f, unsigned feature) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_has_feature) assert(f); assert(f->shared); FUNC_LEAVE_NOAPI(f->shared->lf->feature_flags&feature); } /* end H5F_has_feature() */ /*------------------------------------------------------------------------- * Function: H5F_get_driver_id * * Purpose: Quick and dirty routine to retrieve the file's 'driver_id' value * (Mainly added to stop non-file routines from poking about in the * H5F_t data structure) * * Return: 'driver_id' on success/abort on failure (shouldn't fail) * * Programmer: Quincey Koziol * October 10, 2000 * * Modifications: * *------------------------------------------------------------------------- */ hid_t H5F_get_driver_id(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_get_driver_id) assert(f); assert(f->shared); assert(f->shared->lf); FUNC_LEAVE_NOAPI(f->shared->lf->driver_id) } /*------------------------------------------------------------------------- * Function: H5F_get_fileno * * Purpose: Quick and dirty routine to retrieve the file's 'fileno' value * (Mainly added to stop non-file routines from poking about in the * H5F_t data structure) * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * March 27, 2002 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5F_get_fileno(const H5F_t *f, unsigned long *filenum) { herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI(H5F_get_fileno, FAIL) assert(f); assert(f->shared); assert(f->shared->lf); assert(filenum); /* Retrieve the file's serial number */ if(H5FD_get_fileno(f->shared->lf,filenum)<0) HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, FAIL, "can't retrieve fileno") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_get_fileno() */ /*------------------------------------------------------------------------- * Function: H5F_get_id * * Purpose: Get the file ID, incrementing it, or "resurrecting" it as * appropriate. * * Return: Non-negative on success/Negative on failure * * Programmer: Raymond Lu * Oct 29, 2003 * * Modifications: *------------------------------------------------------------------------- */ hid_t H5F_get_id(H5F_t *file) { hid_t ret_value; FUNC_ENTER_NOAPI_NOINIT(H5F_get_id) assert(file); if(file->file_id == -1) { if(H5I_remove(file->closing)==NULL) HGOTO_ERROR(H5E_ATOM, H5E_READERROR, FAIL, "unable to remove from closing list") /* Get an atom for the file */ if ((file->file_id = H5I_register(H5I_FILE, file))<0) HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file") /* Indicate file is not closing */ file->closing = 0; } else { /* Increment reference count on atom. */ if (H5I_inc_ref(file->file_id)<0) HGOTO_ERROR (H5E_ATOM, H5E_CANTSET, FAIL, "incrementing file ID failed"); } ret_value = file->file_id; done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_get_id() */ /*------------------------------------------------------------------------- * Function: H5F_get_base_addr * * Purpose: Quick and dirty routine to retrieve the file's 'base_addr' value * (Mainly added to stop non-file routines from poking about in the * H5F_t data structure) * * Return: Non-negative on success/Negative on failure * * Programmer: Raymond Lu * December 20, 2002 * * Modifications: * *------------------------------------------------------------------------- */ haddr_t H5F_get_base_addr(const H5F_t *f) { /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5F_get_base_addr) assert(f); assert(f->shared); FUNC_LEAVE_NOAPI(f->shared->base_addr) } /* end H5F_get_base_addr() */ /*------------------------------------------------------------------------- * Function: H5F_get_eoa * * Purpose: Quick and dirty routine to retrieve the file's 'eoa' value * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * June 1, 2004 * * Modifications: * *------------------------------------------------------------------------- */ haddr_t H5F_get_eoa(const H5F_t *f) { haddr_t ret_value; /* Use FUNC_ENTER_NOAPI_NOINIT_NOFUNC here to avoid performance issues */ FUNC_ENTER_NOAPI(H5F_get_eoa, HADDR_UNDEF) assert(f); assert(f->shared); /* Dispatch to driver */ if (HADDR_UNDEF==(ret_value=H5FD_get_eoa(f->shared->lf))) HGOTO_ERROR(H5E_VFL, H5E_CANTINIT, HADDR_UNDEF, "driver get_eoa request failed") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_get_base_addr() */ #ifdef H5_HAVE_PARALLEL /*------------------------------------------------------------------------- * Function: H5F_mpi_get_rank * * Purpose: Retrieves the rank of an MPI process. * * Return: Success: The rank (non-negative) * * Failure: Negative * * Programmer: Quincey Koziol * Friday, January 30, 2004 * * Modifications: * *------------------------------------------------------------------------- */ int H5F_mpi_get_rank(const H5F_t *f) { int ret_value; FUNC_ENTER_NOAPI(H5F_mpi_get_rank, FAIL) assert(f && f->shared); /* Dispatch to driver */ if ((ret_value=H5FD_mpi_get_rank(f->shared->lf))<0) HGOTO_ERROR(H5E_VFL, H5E_CANTGET, FAIL, "driver get_rank request failed") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_mpi_get_rank() */ /*------------------------------------------------------------------------- * Function: H5F_mpi_get_size * * Purpose: Retrieves the size of the communicator used for the file * * Return: Success: The communicator size (non-negative) * * Failure: Negative * * Programmer: Quincey Koziol * Friday, January 30, 2004 * * Modifications: * *------------------------------------------------------------------------- */ int H5F_mpi_get_size(const H5F_t *f) { int ret_value; FUNC_ENTER_NOAPI(H5F_mpi_get_size, FAIL) assert(f && f->shared); /* Dispatch to driver */ if ((ret_value=H5FD_mpi_get_size(f->shared->lf))<0) HGOTO_ERROR(H5E_VFL, H5E_CANTGET, FAIL, "driver get_size request failed") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_mpi_get_size() */ /*------------------------------------------------------------------------- * Function: H5F_mpi_get_comm * * Purpose: Retrieves the file's communicator * * Return: Success: The communicator (non-negative) * * Failure: Negative * * Programmer: Quincey Koziol * Friday, January 30, 2004 * * Modifications: * *------------------------------------------------------------------------- */ MPI_Comm H5F_mpi_get_comm(const H5F_t *f) { MPI_Comm ret_value; FUNC_ENTER_NOAPI(H5F_mpi_get_comm, MPI_COMM_NULL) assert(f && f->shared); /* Dispatch to driver */ if ((ret_value=H5FD_mpi_get_comm(f->shared->lf))==MPI_COMM_NULL) HGOTO_ERROR(H5E_VFL, H5E_CANTGET, MPI_COMM_NULL, "driver get_comm request failed") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_mpi_get_comm() */ #endif /* H5_HAVE_PARALLEL */ /*------------------------------------------------------------------------- * Function: H5F_block_read * * Purpose: Reads some data from a file/server/etc into a buffer. * The data is contiguous. The address is relative to the base * address for the file. * * Errors: * IO READERROR Low-level read failed. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * matzke@llnl.gov * Jul 10 1997 * * Modifications: * Albert Cheng, 1998-06-02 * Added XFER_MODE argument * * Robb Matzke, 1999-07-28 * The ADDR argument is passed by value. * * Robb Matzke, 1999-08-02 * Modified to use the virtual file layer. The data transfer * property list is passed in by object ID since that's how the * virtual file layer needs it. *------------------------------------------------------------------------- */ herr_t H5F_block_read(const H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size, hid_t dxpl_id, void *buf/*out*/) { haddr_t abs_addr; herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5F_block_read, FAIL) assert (f); assert (f->shared); assert(sizeshared->base_addr + addr; /* Read the data */ if (H5FD_read(f->shared->lf, type, dxpl_id, abs_addr, size, buf)<0) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed") done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_block_write * * Purpose: Writes some data from memory to a file/server/etc. The * data is contiguous. The address is relative to the base * address. * * Errors: * IO WRITEERROR Low-level write failed. * IO WRITEERROR No write intent. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * matzke@llnl.gov * Jul 10 1997 * * Modifications: * Albert Cheng, 1998-06-02 * Added XFER_MODE argument * * Robb Matzke, 1999-07-28 * The ADDR argument is passed by value. * * Robb Matzke, 1999-08-02 * Modified to use the virtual file layer. The data transfer * property list is passed in by object ID since that's how the * virtual file layer needs it. *------------------------------------------------------------------------- */ herr_t H5F_block_write(const H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size, hid_t dxpl_id, const void *buf) { haddr_t abs_addr; herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5F_block_write, FAIL) assert (f); assert (f->shared); assert (sizeintent & H5F_ACC_RDWR)) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "no write intent") /* Convert the relative address to an absolute address */ abs_addr = f->shared->base_addr + addr; /* Write the data */ if (H5FD_write(f->shared->lf, type, dxpl_id, abs_addr, size, buf)) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed") done: FUNC_LEAVE_NOAPI(ret_value) } /*------------------------------------------------------------------------- * Function: H5F_addr_encode * * Purpose: Encodes an address into the buffer pointed to by *PP and * then increments the pointer to the first byte after the * address. An undefined value is stored as all 1's. * * Return: void * * Programmer: Robb Matzke * Friday, November 7, 1997 * * Modifications: * Robb Matzke, 1999-07-28 * The ADDR argument is passed by value. *------------------------------------------------------------------------- */ void H5F_addr_encode(const H5F_t *f, uint8_t **pp/*in,out*/, haddr_t addr) { unsigned i; assert(f); assert(pp && *pp); if (H5F_addr_defined(addr)) { for (i=0; i>= 8; } assert("overflow" && 0 == addr); } else { for (i=0; ishared->lf))<0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to check free space for file") done: FUNC_LEAVE_API(ret_value) } /* end H5Fget_freespace() */ /*------------------------------------------------------------------------- * Function: H5Fget_filesize * * Purpose: Retrieves the file size of the HDF5 file. This function * is called after an existing file is opened in order * to learn the true size of the underlying file. * * Return: Success: File size * Failure: Negative * * Programmer: David Pitt * david.pitt@bigpond.com * Apr 27, 2004 * * Modifications: * *------------------------------------------------------------------------- */ haddr_t H5Fget_filesize(hid_t file_id) { H5F_t *file=NULL; /* File object for file ID */ haddr_t ret_value; /* Return value */ FUNC_ENTER_API(H5Fget_filesize, HADDR_UNDEF) H5TRACE1("a","i",file_id); /* Check args */ if(NULL==(file=H5I_object_verify(file_id, H5I_FILE))) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, HADDR_UNDEF, "not a file ID") /* Go get the actual file size */ if((ret_value = H5FDget_eof(file->shared->lf))==HADDR_UNDEF) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, HADDR_UNDEF, "unable to get file size") done: FUNC_LEAVE_API(ret_value) } /* end H5Fget_filesize() */ /*------------------------------------------------------------------------- * Function: H5Fget_name * * Purpose: Gets the name of the file to which object OBJ_ID belongs. * If `name' is non-NULL then write up to `size' bytes into that * buffer and always return the length of the entry name. * Otherwise `size' is ignored and the function does not store the name, * just returning the number of characters required to store the name. * If an error occurs then the buffer pointed to by `name' (NULL or non-NULL) * is unchanged and the function returns a negative value. * * Return: Success: The length of the file name * Failure: Negative * * Programmer: Raymond Lu * June 29, 2004 * * Modifications: * *------------------------------------------------------------------------- */ ssize_t H5Fget_name(hid_t obj_id, char *name/*out*/, size_t size) { H5G_entry_t *ent; /*symbol table entry */ size_t len=0; ssize_t ret_value; FUNC_ENTER_API (H5Fget_name, FAIL); H5TRACE3("Zs","ixz",obj_id,name,size); /* get symbol table entry */ if((ent = H5G_loc(obj_id))==NULL) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid object ID") len = HDstrlen(ent->file->name); if(name) { HDstrncpy(name, ent->file->name, MIN(len+1,size)); if(len >= size) name[size-1]='\0'; } /* end if */ /* Set return value */ ret_value=(ssize_t)len; done: FUNC_LEAVE_API(ret_value); } /* end H5Fget_name() */