/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /*------------------------------------------------------------------------- * * Created: H5FAdblock.c * * Purpose: Data block routines for fixed arrays. * *------------------------------------------------------------------------- */ /**********************/ /* Module Declaration */ /**********************/ #define H5FA_MODULE /***********************/ /* Other Packages Used */ /***********************/ /***********/ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5Eprivate.h" /* Error handling */ #include "H5FApkg.h" /* Fixed Arrays */ #include "H5FLprivate.h" /* Free Lists */ #include "H5MFprivate.h" /* File memory management */ /****************/ /* Local Macros */ /****************/ /******************/ /* Local Typedefs */ /******************/ /********************/ /* Package Typedefs */ /********************/ /********************/ /* Local Prototypes */ /********************/ /*********************/ /* Package Variables */ /*********************/ /*****************************/ /* Library Private Variables */ /*****************************/ /*******************/ /* Local Variables */ /*******************/ /* Declare a free list to manage the H5FA_dblock_t struct */ H5FL_DEFINE_STATIC(H5FA_dblock_t); /* Declare a free list to manage the chunk elements */ H5FL_BLK_DEFINE(chunk_elmts); /* Declare a free list to manage blocks of 'page init' bitmasks */ H5FL_BLK_DEFINE(fa_page_init); /*------------------------------------------------------------------------- * Function: H5FA__dblock_alloc * * Purpose: Allocate fixed array data block * * Return: Non-NULL pointer to data block on success/NULL on failure * * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- */ BEGIN_FUNC(PKG, ERR, H5FA_dblock_t *, NULL, NULL, H5FA__dblock_alloc(H5FA_hdr_t *hdr, hsize_t nelmts)) /* Local variables */ H5FA_dblock_t *dblock = NULL; /* fixed array data block */ /* Check arguments */ HDassert(hdr); HDassert(nelmts > 0); /* Allocate memory for the data block */ if(NULL == (dblock = H5FL_CALLOC(H5FA_dblock_t))) H5E_THROW(H5E_CANTALLOC, "memory allocation failed for fixed array data block") /* Share common array information */ if(H5FA__hdr_incr(hdr) < 0) H5E_THROW(H5E_CANTINC, "can't increment reference count on shared array header") dblock->hdr = hdr; /* Set non-zero internal fields */ dblock->dblk_page_nelmts = (size_t)1 << hdr->cparam.max_dblk_page_nelmts_bits; /* Check if this data block should be paged */ if(nelmts > dblock->dblk_page_nelmts) { /* Compute number of pages */ hsize_t npages = ((nelmts + dblock->dblk_page_nelmts) - 1) / dblock->dblk_page_nelmts; /* Safely assign the number of pages */ H5_ASSIGN_OVERFLOW(/* To: */ dblock->npages, /* From: */ npages, /* From: */ hsize_t, /* To: */ size_t); /* Sanity check that we have at least 1 page */ HDassert(dblock->npages > 0); /* Compute size of 'page init' flag array, in bytes */ dblock->dblk_page_init_size = (dblock->npages + 7) / 8; HDassert(dblock->dblk_page_init_size > 0); /* Allocate space for 'page init' flags */ if(NULL == (dblock->dblk_page_init = H5FL_BLK_CALLOC(fa_page_init, dblock->dblk_page_init_size))) H5E_THROW(H5E_CANTALLOC, "memory allocation failed for page init bitmask") /* Compute data block page size */ dblock->dblk_page_size = (dblock->dblk_page_nelmts * hdr->cparam.raw_elmt_size) + H5FA_SIZEOF_CHKSUM; /* Compute the # of elements on last page */ if(0 == nelmts % dblock->dblk_page_nelmts) dblock->last_page_nelmts = dblock->dblk_page_nelmts; else dblock->last_page_nelmts = (size_t)(nelmts % dblock->dblk_page_nelmts); } /* end if */ else { hsize_t dblk_size = hdr->cparam.nelmts * hdr->cparam.cls->nat_elmt_size; /* Allocate buffer for elements in data block */ H5_CHECK_OVERFLOW(dblk_size, /* From: */hsize_t, /* To: */size_t); if(NULL == (dblock->elmts = H5FL_BLK_MALLOC(chunk_elmts, (size_t)dblk_size))) H5E_THROW(H5E_CANTALLOC, "memory allocation failed for data block element buffer") } /* end else */ /* Set the return value */ ret_value = dblock; CATCH if(!ret_value) if(dblock && H5FA__dblock_dest(dblock) < 0) H5E_THROW(H5E_CANTFREE, "unable to destroy fixed array data block") END_FUNC(PKG) /* end H5FA__dblock_alloc() */ /*------------------------------------------------------------------------- * Function: H5FA__dblock_create * * Purpose: Creates a fixed array data block in the file * * Return: Valid file address on success/HADDR_UNDEF on failure * * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- */ BEGIN_FUNC(PKG, ERR, haddr_t, HADDR_UNDEF, HADDR_UNDEF, H5FA__dblock_create(H5FA_hdr_t *hdr, hid_t dxpl_id, hbool_t *hdr_dirty, hsize_t nelmts)) /* Local variables */ H5FA_dblock_t *dblock = NULL; /* fixed array data block */ haddr_t dblock_addr; /* fixed array data block address */ #ifdef H5FA_DEBUG HDfprintf(stderr, "%s: Called, hdr->stats.nelmts = %Zu, nelmts = %Zu\n", FUNC, hdr->stats.nelmts, nelmts); #endif /* H5FA_DEBUG */ /* Sanity check */ HDassert(hdr); HDassert(hdr_dirty); HDassert(nelmts > 0); /* Allocate the data block */ if(NULL == (dblock = H5FA__dblock_alloc(hdr, nelmts))) H5E_THROW(H5E_CANTALLOC, "memory allocation failed for fixed array data block") /* Set size of data block on disk */ hdr->stats.dblk_size = dblock->size = H5FA_DBLOCK_SIZE(dblock); #ifdef H5FA_DEBUG HDfprintf(stderr, "%s: dblock->size = %Zu\n", FUNC, dblock->size); #endif /* H5FA_DEBUG */ /* Allocate space for the data block on disk */ if(HADDR_UNDEF == (dblock_addr = H5MF_alloc(hdr->f, H5FD_MEM_FARRAY_DBLOCK, dxpl_id, (hsize_t)dblock->size))) H5E_THROW(H5E_CANTALLOC, "file allocation failed for fixed array data block") dblock->addr = dblock_addr; /* Don't initialize elements if paged */ if(!dblock->npages) /* Clear any elements in data block to fill value */ if((hdr->cparam.cls->fill)(dblock->elmts, (size_t)hdr->cparam.nelmts) < 0) H5E_THROW(H5E_CANTSET, "can't set fixed array data block elements to class's fill value") /* Cache the new fixed array data block */ if(H5AC_insert_entry(hdr->f, dxpl_id, H5AC_FARRAY_DBLOCK, dblock_addr, dblock, H5AC__NO_FLAGS_SET) < 0) H5E_THROW(H5E_CANTINSERT, "can't add fixed array data block to cache") /* Mark the header dirty (for updating statistics) */ *hdr_dirty = TRUE; /* Set address of data block to return */ ret_value = dblock_addr; CATCH if(!H5F_addr_defined(ret_value)) if(dblock) { /* Release data block's disk space */ if(H5F_addr_defined(dblock->addr) && H5MF_xfree(hdr->f, H5FD_MEM_FARRAY_DBLOCK, dxpl_id, dblock->addr, (hsize_t)dblock->size) < 0) H5E_THROW(H5E_CANTFREE, "unable to release fixed array data block") /* Destroy data block */ if(H5FA__dblock_dest(dblock) < 0) H5E_THROW(H5E_CANTFREE, "unable to destroy fixed array data block") } /* end if */ END_FUNC(PKG) /* end H5FA__dblock_create() */ /*------------------------------------------------------------------------- * Function: H5FA__dblock_protect * * Purpose: Convenience wrapper around protecting fixed array data block * * Return: Non-NULL pointer to data block on success/NULL on failure * * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- */ BEGIN_FUNC(PKG, ERR, H5FA_dblock_t *, NULL, NULL, H5FA__dblock_protect(H5FA_hdr_t *hdr, hid_t dxpl_id, haddr_t dblk_addr, hsize_t dblk_nelmts, H5AC_protect_t rw)) /* Local variables */ H5FA_dblock_cache_ud_t udata; /* Information needed for loading data block */ #ifdef H5FA_DEBUG HDfprintf(stderr, "%s: Called\n", FUNC); #endif /* H5FA_DEBUG */ /* Sanity check */ HDassert(hdr); HDassert(H5F_addr_defined(dblk_addr)); HDassert(dblk_nelmts); /* Set up user data */ udata.hdr = hdr; udata.nelmts = dblk_nelmts; /* Protect the data block */ if(NULL == (ret_value = (H5FA_dblock_t *)H5AC_protect(hdr->f, dxpl_id, H5AC_FARRAY_DBLOCK, dblk_addr, &udata, rw))) H5E_THROW(H5E_CANTPROTECT, "unable to protect fixed array data block, address = %llu", (unsigned long long)dblk_addr) CATCH END_FUNC(PKG) /* end H5FA__dblock_protect() */ /*------------------------------------------------------------------------- * Function: H5FA__dblock_unprotect * * Purpose: Convenience wrapper around unprotecting fixed array data block * * Return: SUCCEED/FAIL * * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- */ BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5FA__dblock_unprotect(H5FA_dblock_t *dblock, hid_t dxpl_id, unsigned cache_flags)) /* Local variables */ #ifdef H5FA_DEBUG HDfprintf(stderr, "%s: Called\n", FUNC); #endif /* H5FA_DEBUG */ /* Sanity check */ HDassert(dblock); /* Unprotect the data block */ if(H5AC_unprotect(dblock->hdr->f, dxpl_id, H5AC_FARRAY_DBLOCK, dblock->addr, dblock, cache_flags) < 0) H5E_THROW(H5E_CANTUNPROTECT, "unable to unprotect fixed array data block, address = %llu", (unsigned long long)dblock->addr) CATCH END_FUNC(PKG) /* end H5FA__dblock_unprotect() */ /*------------------------------------------------------------------------- * Function: H5FA__dblock_delete * * Purpose: Delete a data block * * Return: SUCCEED/FAIL * * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- */ BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5FA__dblock_delete(H5FA_hdr_t *hdr, hid_t dxpl_id, haddr_t dblk_addr, hsize_t dblk_nelmts)) /* Local variables */ H5FA_dblock_t *dblock = NULL; /* Pointer to data block */ #ifdef H5FA_DEBUG HDfprintf(stderr, "%s: Called\n", FUNC); #endif /* H5FA_DEBUG */ /* Sanity check */ HDassert(hdr); HDassert(H5F_addr_defined(dblk_addr)); HDassert(dblk_nelmts > 0); /* Protect data block */ if(NULL == (dblock = H5FA__dblock_protect(hdr, dxpl_id, dblk_addr, dblk_nelmts, H5AC_WRITE))) H5E_THROW(H5E_CANTPROTECT, "unable to protect fixed array data block, address = %llu", (unsigned long long)dblk_addr) /* Check if data block is paged */ if(dblock->npages) { haddr_t dblk_page_addr; /* Address of each data block page */ size_t u; /* Local index variable */ /* Set up initial state */ dblk_page_addr = dblk_addr + H5FA_DBLOCK_PREFIX_SIZE(dblock); /* Iterate over pages in data block */ for(u = 0; u < dblock->npages; u++) { #ifdef H5FA_DEBUG HDfprintf(stderr, "%s: Expunging data block page from cache\n", FUNC); #endif /* H5FA_DEBUG */ /* Evict the data block page from the metadata cache */ /* (OK to call if it doesn't exist in the cache) */ if(H5AC_expunge_entry(hdr->f, dxpl_id, H5AC_FARRAY_DBLK_PAGE, dblk_page_addr, H5AC__NO_FLAGS_SET) < 0) H5E_THROW(H5E_CANTEXPUNGE, "unable to remove array data block page from metadata cache") #ifdef H5FA_DEBUG HDfprintf(stderr, "%s: Done expunging data block page from cache\n", FUNC); #endif /* H5FA_DEBUG */ /* Advance to next page address */ dblk_page_addr += dblock->dblk_page_size; } /* end for */ } /* end if */ CATCH /* Finished deleting data block in metadata cache */ if(dblock && H5FA__dblock_unprotect(dblock, dxpl_id, H5AC__DIRTIED_FLAG | H5AC__DELETED_FLAG | H5AC__FREE_FILE_SPACE_FLAG) < 0) H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array data block") END_FUNC(PKG) /* end H5FA__dblock_delete() */ /*------------------------------------------------------------------------- * Function: H5FA__dblock_dest * * Purpose: Destroys a fixed array data block in memory. * * Return: SUCCEED/FAIL * * Programmer: Vailin Choi * Thursday, April 30, 2009 * *------------------------------------------------------------------------- */ BEGIN_FUNC(PKG, ERR, herr_t, SUCCEED, FAIL, H5FA__dblock_dest(H5FA_dblock_t *dblock)) /* Sanity check */ HDassert(dblock); /* Check if shared header field has been initialized */ if(dblock->hdr) { /* Check if we've got elements in the data block */ if(dblock->elmts && !dblock->npages) { /* Free buffer for data block elements */ HDassert(dblock->hdr->cparam.nelmts > 0); dblock->elmts = H5FL_BLK_FREE(chunk_elmts, dblock->elmts); } /* end if */ /* Check if data block is paged */ if(dblock->npages) { /* Free buffer for 'page init' bitmask, if there is one */ HDassert(dblock->dblk_page_init_size > 0); if(dblock->dblk_page_init) dblock->dblk_page_init = H5FL_BLK_FREE(fa_page_init, dblock->dblk_page_init); } /* end if */ /* Decrement reference count on shared info */ if(H5FA__hdr_decr(dblock->hdr) < 0) H5E_THROW(H5E_CANTDEC, "can't decrement reference count on shared array header") dblock->hdr = NULL; } /* end if */ /* Free the data block itself */ dblock = H5FL_FREE(H5FA_dblock_t, dblock); CATCH END_FUNC(PKG) /* end H5FA__dblock_dest() */