/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * Programmer: Quincey Koziol * Monday, April 17, 2000 * * Purpose: The POSIX unbuffered file driver using only the HDF5 public * API and with a few optimizations: the lseek() call is made * only when the current file position is unknown or needs to be * changed based on previous I/O through this driver (don't mix * I/O from this driver with I/O from other parts of the * application to the same file). * With custom modifications... */ #include "H5FDdrvr_module.h" /* This source code file is part of the H5FD driver module */ #include "H5private.h" /* Generic Functions */ #include "H5Eprivate.h" /* Error handling */ #include "H5Fprivate.h" /* File access */ #include "H5FDprivate.h" /* File drivers */ #include "H5FDlog.h" /* Logging file driver */ #include "H5FLprivate.h" /* Free Lists */ #include "H5Iprivate.h" /* IDs */ #include "H5MMprivate.h" /* Memory management */ #include "H5Pprivate.h" /* Property lists */ /* The driver identification number, initialized at runtime */ static hid_t H5FD_LOG_g = 0; /* Whether to ignore file locks when disabled (env var value) */ static htri_t ignore_disabled_file_locks_s = FAIL; /* Driver-specific file access properties */ typedef struct H5FD_log_fapl_t { char * logfile; /* Allocated log file name */ unsigned long long flags; /* Flags for logging behavior */ size_t buf_size; /* Size of buffers for track flavor and number of times each byte is accessed */ } H5FD_log_fapl_t; /* Define strings for the different file memory types * These are defined in the H5F_mem_t enum from H5Fpublic.h * Note that H5FD_MEM_NOLIST is not listed here since it has * a negative value. */ static const char *flavors[] = { "H5FD_MEM_DEFAULT", "H5FD_MEM_SUPER", "H5FD_MEM_BTREE", "H5FD_MEM_DRAW", "H5FD_MEM_GHEAP", "H5FD_MEM_LHEAP", "H5FD_MEM_OHDR", }; /* The description of a file belonging to this driver. The `eoa' and `eof' * determine the amount of hdf5 address space in use and the high-water mark * of the file (the current size of the underlying filesystem file). The * `pos' value is used to eliminate file position updates when they would be a * no-op. Unfortunately we've found systems that use separate file position * indicators for reading and writing so the lseek can only be eliminated if * the current operation is the same as the previous operation. When opening * a file the `eof' will be set to the current file size, `eoa' will be set * to zero, `pos' will be set to H5F_ADDR_UNDEF (as it is when an error * occurs), and `op' will be set to H5F_OP_UNKNOWN. */ typedef struct H5FD_log_t { H5FD_t pub; /* public stuff, must be first */ int fd; /* the unix file */ haddr_t eoa; /* end of allocated region */ haddr_t eof; /* end of file; current file size */ haddr_t pos; /* current file I/O position */ H5FD_file_op_t op; /* last operation */ hbool_t ignore_disabled_file_locks; char filename[H5FD_MAX_FILENAME_LEN]; /* Copy of file name from open operation */ #ifndef H5_HAVE_WIN32_API /* On most systems the combination of device and i-node number uniquely * identify a file. Note that Cygwin, MinGW and other Windows POSIX * environments have the stat function (which fakes inodes) * and will use the 'device + inodes' scheme as opposed to the * Windows code further below. */ dev_t device; /* file device number */ ino_t inode; /* file i-node number */ #else /* Files in windows are uniquely identified by the volume serial * number and the file index (both low and high parts). * * There are caveats where these numbers can change, especially * on FAT file systems. On NTFS, however, a file should keep * those numbers the same until renamed or deleted (though you * can use ReplaceFile() on NTFS to keep the numbers the same * while renaming). * * See the MSDN "BY_HANDLE_FILE_INFORMATION Structure" entry for * more information. * * http://msdn.microsoft.com/en-us/library/aa363788(v=VS.85).aspx */ DWORD nFileIndexLow; DWORD nFileIndexHigh; DWORD dwVolumeSerialNumber; HANDLE hFile; /* Native windows file handle */ #endif /* H5_HAVE_WIN32_API */ /* Information from properties set by 'h5repart' tool * * Whether to eliminate the family driver info and convert this file to * a single file */ hbool_t fam_to_single; /* Fields for tracking I/O operations */ unsigned char * nread; /* Number of reads from a file location */ unsigned char * nwrite; /* Number of write to a file location */ unsigned char * flavor; /* Flavor of information written to file location */ unsigned long long total_read_ops; /* Total number of read operations */ unsigned long long total_write_ops; /* Total number of write operations */ unsigned long long total_seek_ops; /* Total number of seek operations */ unsigned long long total_truncate_ops; /* Total number of truncate operations */ double total_read_time; /* Total time spent in read operations */ double total_write_time; /* Total time spent in write operations */ double total_seek_time; /* Total time spent in seek operations */ double total_truncate_time; /* Total time spent in truncate operations */ size_t iosize; /* Size of I/O information buffers */ FILE * logfp; /* Log file pointer */ H5FD_log_fapl_t fa; /* Driver-specific file access properties */ } H5FD_log_t; /* * These macros check for overflow of various quantities. These macros * assume that HDoff_t is signed and haddr_t and size_t are unsigned. * * ADDR_OVERFLOW: Checks whether a file address of type `haddr_t' * is too large to be represented by the second argument * of the file seek function. * * SIZE_OVERFLOW: Checks whether a buffer size of type `hsize_t' is too * large to be represented by the `size_t' type. * * REGION_OVERFLOW: Checks whether an address and size pair describe data * which can be addressed entirely by the second * argument of the file seek function. */ #define MAXADDR (((haddr_t)1 << (8 * sizeof(HDoff_t) - 1)) - 1) #define ADDR_OVERFLOW(A) (HADDR_UNDEF == (A) || ((A) & ~(haddr_t)MAXADDR)) #define SIZE_OVERFLOW(Z) ((Z) & ~(hsize_t)MAXADDR) #define REGION_OVERFLOW(A, Z) \ (ADDR_OVERFLOW(A) || SIZE_OVERFLOW(Z) || HADDR_UNDEF == (A) + (Z) || (HDoff_t)((A) + (Z)) < (HDoff_t)(A)) /* Prototypes */ static herr_t H5FD__log_term(void); static void * H5FD__log_fapl_get(H5FD_t *file); static void * H5FD__log_fapl_copy(const void *_old_fa); static herr_t H5FD__log_fapl_free(void *_fa); static H5FD_t *H5FD__log_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr); static herr_t H5FD__log_close(H5FD_t *_file); static int H5FD__log_cmp(const H5FD_t *_f1, const H5FD_t *_f2); static herr_t H5FD__log_query(const H5FD_t *_f1, unsigned long *flags); static haddr_t H5FD__log_alloc(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size); static herr_t H5FD__log_free(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size); static haddr_t H5FD__log_get_eoa(const H5FD_t *_file, H5FD_mem_t type); static herr_t H5FD__log_set_eoa(H5FD_t *_file, H5FD_mem_t type, haddr_t addr); static haddr_t H5FD__log_get_eof(const H5FD_t *_file, H5FD_mem_t type); static herr_t H5FD__log_get_handle(H5FD_t *_file, hid_t fapl, void **file_handle); static herr_t H5FD__log_read(H5FD_t *_file, H5FD_mem_t type, hid_t fapl_id, haddr_t addr, size_t size, void *buf); static herr_t H5FD__log_write(H5FD_t *_file, H5FD_mem_t type, hid_t fapl_id, haddr_t addr, size_t size, const void *buf); static herr_t H5FD__log_truncate(H5FD_t *_file, hid_t dxpl_id, hbool_t closing); static herr_t H5FD__log_lock(H5FD_t *_file, hbool_t rw); static herr_t H5FD__log_unlock(H5FD_t *_file); static herr_t H5FD__log_delete(const char *filename, hid_t fapl_id); static const H5FD_class_t H5FD_log_g = { H5FD_LOG_VALUE, /* value */ "log", /* name */ MAXADDR, /* maxaddr */ H5F_CLOSE_WEAK, /* fc_degree */ H5FD__log_term, /* terminate */ NULL, /* sb_size */ NULL, /* sb_encode */ NULL, /* sb_decode */ sizeof(H5FD_log_fapl_t), /* fapl_size */ H5FD__log_fapl_get, /* fapl_get */ H5FD__log_fapl_copy, /* fapl_copy */ H5FD__log_fapl_free, /* fapl_free */ 0, /* dxpl_size */ NULL, /* dxpl_copy */ NULL, /* dxpl_free */ H5FD__log_open, /* open */ H5FD__log_close, /* close */ H5FD__log_cmp, /* cmp */ H5FD__log_query, /* query */ NULL, /* get_type_map */ H5FD__log_alloc, /* alloc */ H5FD__log_free, /* free */ H5FD__log_get_eoa, /* get_eoa */ H5FD__log_set_eoa, /* set_eoa */ H5FD__log_get_eof, /* get_eof */ H5FD__log_get_handle, /* get_handle */ H5FD__log_read, /* read */ H5FD__log_write, /* write */ NULL, /* read vector */ NULL, /* write vector */ NULL, /* read_selection */ NULL, /* write_selection */ NULL, /* flush */ H5FD__log_truncate, /* truncate */ H5FD__log_lock, /* lock */ H5FD__log_unlock, /* unlock */ H5FD__log_delete, /* del */ NULL, /* ctl */ H5FD_FLMAP_DICHOTOMY /* fl_map */ }; /* Default configuration, if none provided */ static const H5FD_log_fapl_t H5FD_log_default_config_g = {NULL, H5FD_LOG_LOC_IO | H5FD_LOG_ALLOC, 4096}; /* Declare a free list to manage the H5FD_log_t struct */ H5FL_DEFINE_STATIC(H5FD_log_t); /*------------------------------------------------------------------------- * Function: H5FD_log_init * * Purpose: Initialize this driver by registering the driver with the * library. * * Return: Success: The driver ID for the log driver * Failure: H5I_INVALID_HID * * Programmer: Robb Matzke * Thursday, July 29, 1999 * *------------------------------------------------------------------------- */ hid_t H5FD_log_init(void) { char *lock_env_var = NULL; /* Environment variable pointer */ hid_t ret_value = H5I_INVALID_HID; /* Return value */ FUNC_ENTER_NOAPI_NOERR /* Check the use disabled file locks environment variable */ lock_env_var = HDgetenv(HDF5_USE_FILE_LOCKING); if (lock_env_var && !HDstrcmp(lock_env_var, "BEST_EFFORT")) ignore_disabled_file_locks_s = TRUE; /* Override: Ignore disabled locks */ else if (lock_env_var && (!HDstrcmp(lock_env_var, "TRUE") || !HDstrcmp(lock_env_var, "1"))) ignore_disabled_file_locks_s = FALSE; /* Override: Don't ignore disabled locks */ else ignore_disabled_file_locks_s = FAIL; /* Environment variable not set, or not set correctly */ if (H5I_VFL != H5I_get_type(H5FD_LOG_g)) H5FD_LOG_g = H5FD_register(&H5FD_log_g, sizeof(H5FD_class_t), FALSE); /* Set return value */ ret_value = H5FD_LOG_g; FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD_log_init() */ /*--------------------------------------------------------------------------- * Function: H5FD__log_term * * Purpose: Shut down the VFD * * Returns: SUCCEED (Can't fail) * * Programmer: Quincey Koziol * Friday, Jan 30, 2004 * *--------------------------------------------------------------------------- */ static herr_t H5FD__log_term(void) { FUNC_ENTER_STATIC_NOERR /* Reset VFL ID */ H5FD_LOG_g = 0; FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5FD__log_term() */ /*------------------------------------------------------------------------- * Function: H5Pset_fapl_log * * Purpose: Modify the file access property list to use the H5FD_LOG * driver defined in this source file. * * Return: SUCCEED/FAIL * * Programmer: Robb Matzke * Thursday, February 19, 1998 * *------------------------------------------------------------------------- */ herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size) { H5FD_log_fapl_t fa; /* File access property list information */ H5P_genplist_t *plist; /* Property list pointer */ herr_t ret_value; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE4("e", "i*sULz", fapl_id, logfile, flags, buf_size); /* Do this first, so that we don't try to free a wild pointer if * H5P_object_verify() fails. */ HDmemset(&fa, 0, sizeof(H5FD_log_fapl_t)); /* Check arguments */ if (NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list") /* Duplicate the log file string * A little wasteful, since this string will just be copied later, but * passing it in as a pointer sets off a chain of impossible-to-resolve * const cast warnings. */ if (logfile != NULL && NULL == (fa.logfile = H5MM_xstrdup(logfile))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to copy log file name") fa.flags = flags; fa.buf_size = buf_size; ret_value = H5P_set_driver(plist, H5FD_LOG, &fa, NULL); done: if (fa.logfile) H5MM_free(fa.logfile); FUNC_LEAVE_API(ret_value) } /* end H5Pset_fapl_log() */ /*------------------------------------------------------------------------- * Function: H5FD__log_fapl_get * * Purpose: Returns a file access property list which indicates how the * specified file is being accessed. The return list could be * used to access another file the same way. * * Return: Success: Ptr to new file access property list with all * members copied from the file struct. * Failure: NULL * * Programmer: Quincey Koziol * Thursday, April 20, 2000 * *------------------------------------------------------------------------- */ static void * H5FD__log_fapl_get(H5FD_t *_file) { H5FD_log_t *file = (H5FD_log_t *)_file; void * ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC_NOERR /* Set return value */ ret_value = H5FD__log_fapl_copy(&(file->fa)); FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_fapl_get() */ /*------------------------------------------------------------------------- * Function: H5FD__log_fapl_copy * * Purpose: Copies the log-specific file access properties. * * Return: Success: Ptr to a new property list * Failure: NULL * * Programmer: Quincey Koziol * Thursday, April 20, 2000 * *------------------------------------------------------------------------- */ static void * H5FD__log_fapl_copy(const void *_old_fa) { const H5FD_log_fapl_t *old_fa = (const H5FD_log_fapl_t *)_old_fa; H5FD_log_fapl_t * new_fa = NULL; /* New FAPL info */ void * ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC HDassert(old_fa); /* Allocate the new FAPL info */ if (NULL == (new_fa = (H5FD_log_fapl_t *)H5MM_calloc(sizeof(H5FD_log_fapl_t)))) HGOTO_ERROR(H5E_FILE, H5E_CANTALLOC, NULL, "unable to allocate log file FAPL") /* Copy the general information */ H5MM_memcpy(new_fa, old_fa, sizeof(H5FD_log_fapl_t)); /* Deep copy the log file name */ if (old_fa->logfile != NULL) if (NULL == (new_fa->logfile = H5MM_strdup(old_fa->logfile))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "unable to allocate log file name") /* Set return value */ ret_value = new_fa; done: if (NULL == ret_value) if (new_fa) { if (new_fa->logfile) new_fa->logfile = (char *)H5MM_xfree(new_fa->logfile); H5MM_free(new_fa); } FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_fapl_copy() */ /*------------------------------------------------------------------------- * Function: H5FD__log_fapl_free * * Purpose: Frees the log-specific file access properties. * * Return: SUCCEED (Can't fail) * * Programmer: Quincey Koziol * Thursday, April 20, 2000 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_fapl_free(void *_fa) { H5FD_log_fapl_t *fa = (H5FD_log_fapl_t *)_fa; FUNC_ENTER_STATIC_NOERR /* Free the fapl information */ if (fa->logfile) fa->logfile = (char *)H5MM_xfree(fa->logfile); H5MM_xfree(fa); FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5FD__log_fapl_free() */ /*------------------------------------------------------------------------- * Function: H5FD__log_open * * Purpose: Create and/or opens a file as an HDF5 file. * * Return: Success: A pointer to a new file data structure. The * public fields will be initialized by the * caller, which is always H5FD_open(). * Failure: NULL * * Programmer: Robb Matzke * Thursday, July 29, 1999 * *------------------------------------------------------------------------- */ static H5FD_t * H5FD__log_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) { H5FD_log_t * file = NULL; H5P_genplist_t * plist; /* Property list */ const H5FD_log_fapl_t *fa; /* File access property list information */ H5FD_log_fapl_t default_fa = H5FD_log_default_config_g; int fd = -1; /* File descriptor */ int o_flags; /* Flags for open() call */ #ifdef H5_HAVE_WIN32_API struct _BY_HANDLE_FILE_INFORMATION fileinfo; #endif H5_timer_t open_timer; /* Timer for open() call */ H5_timer_t stat_timer; /* Timer for stat() call */ h5_stat_t sb; H5FD_t * ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC /* Sanity check on file offsets */ HDcompile_assert(sizeof(HDoff_t) >= sizeof(size_t)); /* Check arguments */ if (!name || !*name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "invalid file name") if (0 == maxaddr || HADDR_UNDEF == maxaddr) HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, NULL, "bogus maxaddr") if (ADDR_OVERFLOW(maxaddr)) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, NULL, "bogus maxaddr") /* Initialize timers */ H5_timer_init(&open_timer); H5_timer_init(&stat_timer); /* Build the open flags */ o_flags = (H5F_ACC_RDWR & flags) ? O_RDWR : O_RDONLY; if (H5F_ACC_TRUNC & flags) o_flags |= O_TRUNC; if (H5F_ACC_CREAT & flags) o_flags |= O_CREAT; if (H5F_ACC_EXCL & flags) o_flags |= O_EXCL; /* Get the driver specific information */ if (NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list") if (NULL == (fa = (const H5FD_log_fapl_t *)H5P_peek_driver_info(plist))) { /* Use default driver configuration*/ fa = &default_fa; } /* Start timer for open() call */ if (fa->flags & H5FD_LOG_TIME_OPEN) H5_timer_start(&open_timer); /* Open the file */ if ((fd = HDopen(name, o_flags, H5_POSIX_CREATE_MODE_RW)) < 0) { int myerrno = errno; HGOTO_ERROR( H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file: name = '%s', errno = %d, error message = '%s', flags = %x, o_flags = %x", name, myerrno, HDstrerror(myerrno), flags, (unsigned)o_flags); } /* Stop timer for open() call */ if (fa->flags & H5FD_LOG_TIME_OPEN) H5_timer_stop(&open_timer); /* Start timer for stat() call */ if (fa->flags & H5FD_LOG_TIME_STAT) H5_timer_start(&stat_timer); /* Get the file stats */ if (HDfstat(fd, &sb) < 0) HSYS_GOTO_ERROR(H5E_FILE, H5E_BADFILE, NULL, "unable to fstat file") /* Stop timer for stat() call */ if (fa->flags & H5FD_LOG_TIME_STAT) H5_timer_stop(&stat_timer); /* Create the new file struct */ if (NULL == (file = H5FL_CALLOC(H5FD_log_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "unable to allocate file struct") file->fd = fd; H5_CHECKED_ASSIGN(file->eof, haddr_t, sb.st_size, h5_stat_size_t); file->pos = HADDR_UNDEF; file->op = OP_UNKNOWN; #ifdef H5_HAVE_WIN32_API file->hFile = (HANDLE)_get_osfhandle(fd); if (INVALID_HANDLE_VALUE == file->hFile) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to get Windows file handle") if (!GetFileInformationByHandle((HANDLE)file->hFile, &fileinfo)) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to get Windows file information") file->nFileIndexHigh = fileinfo.nFileIndexHigh; file->nFileIndexLow = fileinfo.nFileIndexLow; file->dwVolumeSerialNumber = fileinfo.dwVolumeSerialNumber; #else /* H5_HAVE_WIN32_API */ file->device = sb.st_dev; file->inode = sb.st_ino; #endif /* H5_HAVE_WIN32_API */ /* Retain a copy of the name used to open the file, for possible error reporting */ HDstrncpy(file->filename, name, sizeof(file->filename)); file->filename[sizeof(file->filename) - 1] = '\0'; /* Get the flags for logging */ file->fa.flags = fa->flags; if (fa->logfile) file->fa.logfile = H5MM_strdup(fa->logfile); else file->fa.logfile = NULL; file->fa.buf_size = fa->buf_size; /* Check if we are doing any logging at all */ if (file->fa.flags != 0) { /* Allocate buffers for tracking file accesses and data "flavor" */ file->iosize = fa->buf_size; if (file->fa.flags & H5FD_LOG_FILE_READ) { file->nread = (unsigned char *)H5MM_calloc(file->iosize); HDassert(file->nread); } if (file->fa.flags & H5FD_LOG_FILE_WRITE) { file->nwrite = (unsigned char *)H5MM_calloc(file->iosize); HDassert(file->nwrite); } if (file->fa.flags & H5FD_LOG_FLAVOR) { file->flavor = (unsigned char *)H5MM_calloc(file->iosize); HDassert(file->flavor); } /* Set the log file pointer */ if (fa->logfile) file->logfp = HDfopen(fa->logfile, "w"); else file->logfp = stderr; /* Log the timer values */ if (file->fa.flags & H5FD_LOG_TIME_OPEN) { H5_timevals_t open_times; /* Elapsed time for open() call */ H5_timer_get_times(open_timer, &open_times); HDfprintf(file->logfp, "Open took: (%f s)\n", open_times.elapsed); } if (file->fa.flags & H5FD_LOG_TIME_STAT) { H5_timevals_t stat_times; /* Elapsed time for stat() call */ H5_timer_get_times(stat_timer, &stat_times); HDfprintf(file->logfp, "Stat took: (%f s)\n", stat_times.elapsed); } } /* Check the file locking flags in the fapl */ if (ignore_disabled_file_locks_s != FAIL) /* The environment variable was set, so use that preferentially */ file->ignore_disabled_file_locks = ignore_disabled_file_locks_s; else { /* Use the value in the property list */ if (H5P_get(plist, H5F_ACS_IGNORE_DISABLED_FILE_LOCKS_NAME, &file->ignore_disabled_file_locks) < 0) HGOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get ignore disabled file locks property") } /* Check for non-default FAPL */ if (H5P_FILE_ACCESS_DEFAULT != fapl_id) { /* This step is for h5repart tool only. If user wants to change file driver from * family to one that uses single files (sec2, etc.) while using h5repart, this * private property should be set so that in the later step, the library can ignore * the family driver information saved in the superblock. */ if (H5P_exist_plist(plist, H5F_ACS_FAMILY_TO_SINGLE_NAME) > 0) if (H5P_get(plist, H5F_ACS_FAMILY_TO_SINGLE_NAME, &file->fam_to_single) < 0) HGOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get property of changing family to single") } /* Set return value */ ret_value = (H5FD_t *)file; done: if (NULL == ret_value) { if (fd >= 0) HDclose(fd); if (file) file = H5FL_FREE(H5FD_log_t, file); } FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_open() */ /*------------------------------------------------------------------------- * Function: H5FD__log_close * * Purpose: Closes an HDF5 file. * * Return: Success: SUCCEED * Failure: FAIL, file not closed. * * Programmer: Robb Matzke * Thursday, July 29, 1999 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_close(H5FD_t *_file) { H5FD_log_t *file = (H5FD_log_t *)_file; H5_timer_t close_timer; /* Timer for close() call */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity check */ HDassert(file); /* Initialize timer */ H5_timer_init(&close_timer); /* Start timer for close() call */ if (file->fa.flags & H5FD_LOG_TIME_CLOSE) H5_timer_start(&close_timer); /* Close the underlying file */ if (HDclose(file->fd) < 0) HSYS_GOTO_ERROR(H5E_IO, H5E_CANTCLOSEFILE, FAIL, "unable to close file") /* Stop timer for close() call */ if (file->fa.flags & H5FD_LOG_TIME_CLOSE) H5_timer_stop(&close_timer); /* Dump I/O information */ if (file->fa.flags != 0) { haddr_t addr; haddr_t last_addr; unsigned char last_val; if (file->fa.flags & H5FD_LOG_TIME_CLOSE) { H5_timevals_t close_times; /* Elapsed time for close() call */ H5_timer_get_times(close_timer, &close_times); HDfprintf(file->logfp, "Close took: (%f s)\n", close_times.elapsed); } /* Dump the total number of seek/read/write operations */ if (file->fa.flags & H5FD_LOG_NUM_READ) HDfprintf(file->logfp, "Total number of read operations: %llu\n", file->total_read_ops); if (file->fa.flags & H5FD_LOG_NUM_WRITE) HDfprintf(file->logfp, "Total number of write operations: %llu\n", file->total_write_ops); if (file->fa.flags & H5FD_LOG_NUM_SEEK) HDfprintf(file->logfp, "Total number of seek operations: %llu\n", file->total_seek_ops); if (file->fa.flags & H5FD_LOG_NUM_TRUNCATE) HDfprintf(file->logfp, "Total number of truncate operations: %llu\n", file->total_truncate_ops); /* Dump the total time in seek/read/write */ if (file->fa.flags & H5FD_LOG_TIME_READ) HDfprintf(file->logfp, "Total time in read operations: %f s\n", file->total_read_time); if (file->fa.flags & H5FD_LOG_TIME_WRITE) HDfprintf(file->logfp, "Total time in write operations: %f s\n", file->total_write_time); if (file->fa.flags & H5FD_LOG_TIME_SEEK) HDfprintf(file->logfp, "Total time in seek operations: %f s\n", file->total_seek_time); if (file->fa.flags & H5FD_LOG_TIME_TRUNCATE) HDfprintf(file->logfp, "Total time in truncate operations: %f s\n", file->total_truncate_time); /* Dump the write I/O information */ if (file->fa.flags & H5FD_LOG_FILE_WRITE) { HDfprintf(file->logfp, "Dumping write I/O information:\n"); last_val = file->nwrite[0]; last_addr = 0; addr = 1; while (addr < file->eoa) { if (file->nwrite[addr] != last_val) { HDfprintf(file->logfp, "\tAddr %10" PRIuHADDR "-%10" PRIuHADDR " (%10lu bytes) written to %3d times\n", last_addr, (addr - 1), (unsigned long)(addr - last_addr), (int)last_val); last_val = file->nwrite[addr]; last_addr = addr; } addr++; } HDfprintf(file->logfp, "\tAddr %10" PRIuHADDR "-%10" PRIuHADDR " (%10lu bytes) written to %3d times\n", last_addr, (addr - 1), (unsigned long)(addr - last_addr), (int)last_val); } /* Dump the read I/O information */ if (file->fa.flags & H5FD_LOG_FILE_READ) { HDfprintf(file->logfp, "Dumping read I/O information:\n"); last_val = file->nread[0]; last_addr = 0; addr = 1; while (addr < file->eoa) { if (file->nread[addr] != last_val) { HDfprintf(file->logfp, "\tAddr %10" PRIuHADDR "-%10" PRIuHADDR " (%10lu bytes) read from %3d times\n", last_addr, (addr - 1), (unsigned long)(addr - last_addr), (int)last_val); last_val = file->nread[addr]; last_addr = addr; } addr++; } HDfprintf(file->logfp, "\tAddr %10" PRIuHADDR "-%10" PRIuHADDR " (%10lu bytes) read from %3d times\n", last_addr, (addr - 1), (unsigned long)(addr - last_addr), (int)last_val); } /* Dump the I/O flavor information */ if (file->fa.flags & H5FD_LOG_FLAVOR) { HDfprintf(file->logfp, "Dumping I/O flavor information:\n"); last_val = file->flavor[0]; last_addr = 0; addr = 1; while (addr < file->eoa) { if (file->flavor[addr] != last_val) { HDfprintf(file->logfp, "\tAddr %10" PRIuHADDR "-%10" PRIuHADDR " (%10lu bytes) flavor is %s\n", last_addr, (addr - 1), (unsigned long)(addr - last_addr), flavors[last_val]); last_val = file->flavor[addr]; last_addr = addr; } addr++; } HDfprintf(file->logfp, "\tAddr %10" PRIuHADDR "-%10" PRIuHADDR " (%10lu bytes) flavor is %s\n", last_addr, (addr - 1), (unsigned long)(addr - last_addr), flavors[last_val]); } /* Free the logging information */ if (file->fa.flags & H5FD_LOG_FILE_WRITE) file->nwrite = (unsigned char *)H5MM_xfree(file->nwrite); if (file->fa.flags & H5FD_LOG_FILE_READ) file->nread = (unsigned char *)H5MM_xfree(file->nread); if (file->fa.flags & H5FD_LOG_FLAVOR) file->flavor = (unsigned char *)H5MM_xfree(file->flavor); if (file->logfp != stderr) HDfclose(file->logfp); } /* end if */ if (file->fa.logfile) file->fa.logfile = (char *)H5MM_xfree(file->fa.logfile); /* Release the file info */ file = H5FL_FREE(H5FD_log_t, file); done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_close() */ /*------------------------------------------------------------------------- * Function: H5FD__log_cmp * * Purpose: Compares two files belonging to this driver using an * arbitrary (but consistent) ordering. * * Return: Success: A value like strcmp() * Failure: never fails (arguments were checked by the * caller). * * Programmer: Robb Matzke * Thursday, July 29, 1999 * *------------------------------------------------------------------------- */ static int H5FD__log_cmp(const H5FD_t *_f1, const H5FD_t *_f2) { const H5FD_log_t *f1 = (const H5FD_log_t *)_f1; const H5FD_log_t *f2 = (const H5FD_log_t *)_f2; int ret_value = 0; FUNC_ENTER_STATIC_NOERR #ifdef H5_HAVE_WIN32_API if (f1->dwVolumeSerialNumber < f2->dwVolumeSerialNumber) HGOTO_DONE(-1) if (f1->dwVolumeSerialNumber > f2->dwVolumeSerialNumber) HGOTO_DONE(1) if (f1->nFileIndexHigh < f2->nFileIndexHigh) HGOTO_DONE(-1) if (f1->nFileIndexHigh > f2->nFileIndexHigh) HGOTO_DONE(1) if (f1->nFileIndexLow < f2->nFileIndexLow) HGOTO_DONE(-1) if (f1->nFileIndexLow > f2->nFileIndexLow) HGOTO_DONE(1) #else #ifdef H5_DEV_T_IS_SCALAR if (f1->device < f2->device) HGOTO_DONE(-1) if (f1->device > f2->device) HGOTO_DONE(1) #else /* H5_DEV_T_IS_SCALAR */ /* If dev_t isn't a scalar value on this system, just use memcmp to * determine if the values are the same or not. The actual return value * shouldn't really matter... */ if (HDmemcmp(&(f1->device), &(f2->device), sizeof(dev_t)) < 0) HGOTO_DONE(-1) if (HDmemcmp(&(f1->device), &(f2->device), sizeof(dev_t)) > 0) HGOTO_DONE(1) #endif /* H5_DEV_T_IS_SCALAR */ if (f1->inode < f2->inode) HGOTO_DONE(-1) if (f1->inode > f2->inode) HGOTO_DONE(1) #endif done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_cmp() */ /*------------------------------------------------------------------------- * Function: H5FD__log_query * * Purpose: Set the flags that this VFL driver is capable of supporting. * (listed in H5FDpublic.h) * * Return: SUCCEED (Can't fail) * * Programmer: Quincey Koziol * Friday, August 25, 2000 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_query(const H5FD_t *_file, unsigned long *flags /* out */) { const H5FD_log_t *file = (const H5FD_log_t *)_file; FUNC_ENTER_STATIC_NOERR /* Set the VFL feature flags that this driver supports */ if (flags) { *flags = 0; *flags |= H5FD_FEAT_AGGREGATE_METADATA; /* OK to aggregate metadata allocations */ *flags |= H5FD_FEAT_ACCUMULATE_METADATA; /* OK to accumulate metadata for faster writes */ *flags |= H5FD_FEAT_DATA_SIEVE; /* OK to perform data sieving for faster raw data reads & writes */ *flags |= H5FD_FEAT_AGGREGATE_SMALLDATA; /* OK to aggregate "small" raw data allocations */ *flags |= H5FD_FEAT_POSIX_COMPAT_HANDLE; /* get_handle callback returns a POSIX file descriptor */ *flags |= H5FD_FEAT_SUPPORTS_SWMR_IO; /* VFD supports the single-writer/multiple-readers (SWMR) pattern */ *flags |= H5FD_FEAT_DEFAULT_VFD_COMPATIBLE; /* VFD creates a file which can be opened with the default VFD */ /* Check for flags that are set by h5repart */ if (file && file->fam_to_single) *flags |= H5FD_FEAT_IGNORE_DRVRINFO; /* Ignore the driver info when file is opened (which eliminates it) */ } FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5FD__log_query() */ /*------------------------------------------------------------------------- * Function: H5FD__log_alloc * * Purpose: Allocate file memory. * * Return: Success: Address of new memory * Failure: HADDR_UNDEF * * Programmer: Quincey Koziol * Monday, April 17, 2000 * *------------------------------------------------------------------------- */ static haddr_t H5FD__log_alloc(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, hsize_t size) { H5FD_log_t *file = (H5FD_log_t *)_file; haddr_t addr; haddr_t ret_value = HADDR_UNDEF; /* Return value */ FUNC_ENTER_STATIC_NOERR /* Compute the address for the block to allocate */ addr = file->eoa; /* Extend the end-of-allocated space address */ file->eoa = addr + size; /* Retain the (first) flavor of the information written to the file */ if (file->fa.flags != 0) { if (file->fa.flags & H5FD_LOG_FLAVOR) { HDassert(addr < file->iosize); H5_CHECK_OVERFLOW(size, hsize_t, size_t); HDmemset(&file->flavor[addr], (int)type, (size_t)size); } if (file->fa.flags & H5FD_LOG_ALLOC) HDfprintf(file->logfp, "%10" PRIuHADDR "-%10" PRIuHADDR " (%10" PRIuHSIZE " bytes) (%s) Allocated\n", addr, (haddr_t)((addr + size) - 1), size, flavors[type]); } /* Set return value */ ret_value = addr; FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_alloc() */ /*------------------------------------------------------------------------- * Function: H5FD__log_free * * Purpose: Release file memory. * * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Wednesday, September 28, 2016 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_free(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, haddr_t addr, hsize_t size) { H5FD_log_t *file = (H5FD_log_t *)_file; FUNC_ENTER_STATIC_NOERR if (file->fa.flags != 0) { /* Reset the flavor of the information in the file */ if (file->fa.flags & H5FD_LOG_FLAVOR) { HDassert(addr < file->iosize); H5_CHECK_OVERFLOW(size, hsize_t, size_t); HDmemset(&file->flavor[addr], H5FD_MEM_DEFAULT, (size_t)size); } /* Log the file memory freed */ if (file->fa.flags & H5FD_LOG_FREE) HDfprintf(file->logfp, "%10" PRIuHADDR "-%10" PRIuHADDR " (%10" PRIuHSIZE " bytes) (%s) Freed\n", addr, (haddr_t)((addr + size) - 1), size, flavors[type]); } FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5FD__log_free() */ /*------------------------------------------------------------------------- * Function: H5FD__log_get_eoa * * Purpose: Gets the end-of-address marker for the file. The EOA marker * is the first address past the last byte allocated in the * format address space. * * Return: Success: The end-of-address marker. * Failure: HADDR_UNDEF * * Programmer: Robb Matzke * Monday, August 2, 1999 * *------------------------------------------------------------------------- */ static haddr_t H5FD__log_get_eoa(const H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type) { const H5FD_log_t *file = (const H5FD_log_t *)_file; FUNC_ENTER_STATIC_NOERR FUNC_LEAVE_NOAPI(file->eoa) } /* end H5FD__log_get_eoa() */ /*------------------------------------------------------------------------- * Function: H5FD__log_set_eoa * * Purpose: Set the end-of-address marker for the file. This function is * called shortly after an existing HDF5 file is opened in order * to tell the driver where the end of the HDF5 data is located. * * Return: SUCCEED (Can't fail) * * Programmer: Robb Matzke * Thursday, July 29, 1999 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_set_eoa(H5FD_t *_file, H5FD_mem_t type, haddr_t addr) { H5FD_log_t *file = (H5FD_log_t *)_file; FUNC_ENTER_STATIC_NOERR if (file->fa.flags != 0) { /* Check for increasing file size */ if (H5F_addr_gt(addr, file->eoa) && H5F_addr_gt(addr, 0)) { hsize_t size = addr - file->eoa; /* Retain the flavor of the space allocated by the extension */ if (file->fa.flags & H5FD_LOG_FLAVOR) { HDassert(addr < file->iosize); H5_CHECK_OVERFLOW(size, hsize_t, size_t); HDmemset(&file->flavor[file->eoa], (int)type, (size_t)size); } /* Log the extension like an allocation */ if (file->fa.flags & H5FD_LOG_ALLOC) HDfprintf(file->logfp, "%10" PRIuHADDR "-%10" PRIuHADDR " (%10" PRIuHSIZE " bytes) (%s) Allocated\n", file->eoa, addr, size, flavors[type]); } /* Check for decreasing file size */ if (H5F_addr_lt(addr, file->eoa) && H5F_addr_gt(addr, 0)) { hsize_t size = file->eoa - addr; /* Reset the flavor of the space freed by the shrink */ if (file->fa.flags & H5FD_LOG_FLAVOR) { HDassert((addr + size) < file->iosize); H5_CHECK_OVERFLOW(size, hsize_t, size_t); HDmemset(&file->flavor[addr], H5FD_MEM_DEFAULT, (size_t)size); } /* Log the shrink like a free */ if (file->fa.flags & H5FD_LOG_FREE) HDfprintf(file->logfp, "%10" PRIuHADDR "-%10" PRIuHADDR " (%10" PRIuHSIZE " bytes) (%s) Freed\n", file->eoa, addr, size, flavors[type]); } } file->eoa = addr; FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5FD__log_set_eoa() */ /*------------------------------------------------------------------------- * Function: H5FD__log_get_eof * * Purpose: Returns the end-of-file marker, which is the greater of * either the filesystem end-of-file or the HDF5 end-of-address * markers. * * Return: Success: End of file address, the first address past * the end of the "file", either the filesystem file * or the HDF5 file. * Failure: HADDR_UNDEF * * Programmer: Robb Matzke * Thursday, July 29, 1999 * *------------------------------------------------------------------------- */ static haddr_t H5FD__log_get_eof(const H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type) { const H5FD_log_t *file = (const H5FD_log_t *)_file; FUNC_ENTER_STATIC_NOERR FUNC_LEAVE_NOAPI(file->eof) } /* end H5FD__log_get_eof() */ /*------------------------------------------------------------------------- * Function: H5FD__log_get_handle * * Purpose: Returns the file handle of LOG file driver. * * Returns: SUCCEED/FAIL * * Programmer: Raymond Lu * Sept. 16, 2002 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_get_handle(H5FD_t *_file, hid_t H5_ATTR_UNUSED fapl, void **file_handle) { H5FD_log_t *file = (H5FD_log_t *)_file; herr_t ret_value = SUCCEED; FUNC_ENTER_STATIC if (!file_handle) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "file handle not valid") *file_handle = &(file->fd); done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_get_handle() */ /*------------------------------------------------------------------------- * Function: H5FD__log_read * * Purpose: Reads SIZE bytes of data from FILE beginning at address ADDR * into buffer BUF according to data transfer properties in * DXPL_ID. * * Return: Success: SUCCEED. Result is stored in caller-supplied * buffer BUF. * Failure: FAIL, Contents of buffer BUF are undefined. * * Programmer: Robb Matzke * Thursday, July 29, 1999 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_read(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, haddr_t addr, size_t size, void *buf /*out*/) { H5FD_log_t * file = (H5FD_log_t *)_file; size_t orig_size = size; /* Save the original size for later */ haddr_t orig_addr = addr; H5_timer_t read_timer; /* Timer for read operation */ H5_timevals_t read_times; /* Elapsed time for read operation */ HDoff_t offset = (HDoff_t)addr; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC HDassert(file && file->pub.cls); HDassert(buf); /* Initialize timer */ H5_timer_init(&read_timer); /* Check for overflow conditions */ if (!H5F_addr_defined(addr)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "addr undefined, addr = %llu", (unsigned long long)addr) if (REGION_OVERFLOW(addr, size)) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, FAIL, "addr overflow, addr = %llu", (unsigned long long)addr) /* Log the I/O information about the read */ if (file->fa.flags != 0) { size_t tmp_size = size; haddr_t tmp_addr = addr; /* Log information about the number of times these locations are read */ if (file->fa.flags & H5FD_LOG_FILE_READ) { HDassert((addr + size) < file->iosize); while (tmp_size-- > 0) file->nread[tmp_addr++]++; } } #ifndef H5_HAVE_PREADWRITE /* Seek to the correct location (if we don't have pread) */ if (addr != file->pos || OP_READ != file->op) { H5_timer_t seek_timer; /* Timer for seek operation */ H5_timevals_t seek_times; /* Elapsed time for seek operation */ /* Initialize timer */ H5_timer_init(&seek_timer); /* Start timer for seek() call */ if (file->fa.flags & H5FD_LOG_TIME_SEEK) H5_timer_start(&seek_timer); if (HDlseek(file->fd, (HDoff_t)addr, SEEK_SET) < 0) HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") /* Stop timer for seek() call */ if (file->fa.flags & H5FD_LOG_TIME_SEEK) H5_timer_stop(&seek_timer); /* Add to the number of seeks, when tracking that */ if (file->fa.flags & H5FD_LOG_NUM_SEEK) file->total_seek_ops++; /* Add to the total seek time, when tracking that */ if (file->fa.flags & H5FD_LOG_TIME_SEEK) { H5_timer_get_times(seek_timer, &seek_times); file->total_seek_time += seek_times.elapsed; } /* Emit log string if we're tracking individual seek events. */ if (file->fa.flags & H5FD_LOG_LOC_SEEK) { HDfprintf(file->logfp, "Seek: From %10" PRIuHADDR " To %10" PRIuHADDR, file->pos, addr); /* Add the seek time, if we're tracking that. * Note that the seek time is NOT emitted for when just H5FD_LOG_TIME_SEEK * is set. */ if (file->fa.flags & H5FD_LOG_TIME_SEEK) HDfprintf(file->logfp, " (%fs @ %f)\n", seek_times.elapsed, seek_timer.initial.elapsed); else HDfprintf(file->logfp, "\n"); } } #endif /* H5_HAVE_PREADWRITE */ /* Start timer for read operation */ if (file->fa.flags & H5FD_LOG_TIME_READ) H5_timer_start(&read_timer); /* * Read data, being careful of interrupted system calls, partial results, * and the end of the file. */ while (size > 0) { h5_posix_io_t bytes_in = 0; /* # of bytes to read */ h5_posix_io_ret_t bytes_read = -1; /* # of bytes actually read */ /* Trying to read more bytes than the return type can handle is * undefined behavior in POSIX. */ if (size > H5_POSIX_MAX_IO_BYTES) bytes_in = H5_POSIX_MAX_IO_BYTES; else bytes_in = (h5_posix_io_t)size; do { #ifdef H5_HAVE_PREADWRITE bytes_read = HDpread(file->fd, buf, bytes_in, offset); if (bytes_read > 0) offset += bytes_read; #else bytes_read = HDread(file->fd, buf, bytes_in); #endif /* H5_HAVE_PREADWRITE */ } while (-1 == bytes_read && EINTR == errno); if (-1 == bytes_read) { /* error */ int myerrno = errno; time_t mytime = HDtime(NULL); offset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); if (file->fa.flags & H5FD_LOG_LOC_READ) HDfprintf(file->logfp, "Error! Reading: %10" PRIuHADDR "-%10" PRIuHADDR " (%10zu bytes)\n", orig_addr, (orig_addr + orig_size) - 1, orig_size); HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, " "error message = '%s', buf = %p, total read size = %llu, bytes this sub-read = %llu, " "bytes actually read = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_read, (unsigned long long)offset); } if (0 == bytes_read) { /* End of file but not end of format address space */ HDmemset(buf, 0, size); break; } HDassert(bytes_read >= 0); HDassert((size_t)bytes_read <= size); size -= (size_t)bytes_read; addr += (haddr_t)bytes_read; buf = (char *)buf + bytes_read; } /* Stop timer for read operation */ if (file->fa.flags & H5FD_LOG_TIME_READ) H5_timer_stop(&read_timer); /* Add to the number of reads, when tracking that */ if (file->fa.flags & H5FD_LOG_NUM_READ) file->total_read_ops++; /* Add to the total read time, when tracking that */ if (file->fa.flags & H5FD_LOG_TIME_READ) { H5_timer_get_times(read_timer, &read_times); file->total_read_time += read_times.elapsed; } /* Log information about the read */ if (file->fa.flags & H5FD_LOG_LOC_READ) { HDfprintf(file->logfp, "%10" PRIuHADDR "-%10" PRIuHADDR " (%10zu bytes) (%s) Read", orig_addr, (orig_addr + orig_size) - 1, orig_size, flavors[type]); /* Verify that we are reading in the type of data we allocated in this location */ if (file->flavor) { HDassert(type == H5FD_MEM_DEFAULT || type == (H5FD_mem_t)file->flavor[orig_addr] || (H5FD_mem_t)file->flavor[orig_addr] == H5FD_MEM_DEFAULT); HDassert(type == H5FD_MEM_DEFAULT || type == (H5FD_mem_t)file->flavor[(orig_addr + orig_size) - 1] || (H5FD_mem_t)file->flavor[(orig_addr + orig_size) - 1] == H5FD_MEM_DEFAULT); } /* Add the read time, if we're tracking that. * Note that the read time is NOT emitted for when just H5FD_LOG_TIME_READ * is set. */ if (file->fa.flags & H5FD_LOG_TIME_READ) HDfprintf(file->logfp, " (%fs @ %f)\n", read_times.elapsed, read_timer.initial.elapsed); else HDfprintf(file->logfp, "\n"); } /* Update current position */ file->pos = addr; file->op = OP_READ; done: if (ret_value < 0) { /* Reset last file I/O information */ file->pos = HADDR_UNDEF; file->op = OP_UNKNOWN; } FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_read() */ /*------------------------------------------------------------------------- * Function: H5FD__log_write * * Purpose: Writes SIZE bytes of data to FILE beginning at address ADDR * from buffer BUF according to data transfer properties in * DXPL_ID. * * Return: SUCCEED/FAIL * * Programmer: Robb Matzke * Thursday, July 29, 1999 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, haddr_t addr, size_t size, const void *buf) { H5FD_log_t * file = (H5FD_log_t *)_file; size_t orig_size = size; /* Save the original size for later */ haddr_t orig_addr = addr; H5_timer_t write_timer; /* Timer for write operation */ H5_timevals_t write_times; /* Elapsed time for write operation */ HDoff_t offset = (HDoff_t)addr; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC HDassert(file && file->pub.cls); HDassert(size > 0); HDassert(buf); /* Initialize timer */ H5_timer_init(&write_timer); /* Verify that we are writing out the type of data we allocated in this location */ if (file->flavor) { HDassert(type == H5FD_MEM_DEFAULT || type == (H5FD_mem_t)file->flavor[addr] || (H5FD_mem_t)file->flavor[addr] == H5FD_MEM_DEFAULT); HDassert(type == H5FD_MEM_DEFAULT || type == (H5FD_mem_t)file->flavor[(addr + size) - 1] || (H5FD_mem_t)file->flavor[(addr + size) - 1] == H5FD_MEM_DEFAULT); } /* Check for overflow conditions */ if (!H5F_addr_defined(addr)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "addr undefined, addr = %llu", (unsigned long long)addr) if (REGION_OVERFLOW(addr, size)) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, FAIL, "addr overflow, addr = %llu, size = %llu", (unsigned long long)addr, (unsigned long long)size) /* Log the I/O information about the write */ if (file->fa.flags & H5FD_LOG_FILE_WRITE) { size_t tmp_size = size; haddr_t tmp_addr = addr; /* Log information about the number of times these locations are read */ HDassert((addr + size) < file->iosize); while (tmp_size-- > 0) file->nwrite[tmp_addr++]++; } #ifndef H5_HAVE_PREADWRITE /* Seek to the correct location (if we don't have pwrite) */ if (addr != file->pos || OP_WRITE != file->op) { H5_timer_t seek_timer; /* Timer for seek operation */ H5_timevals_t seek_times; /* Elapsed time for seek operation */ /* Initialize timer */ H5_timer_init(&seek_timer); /* Start timer for seek() call */ if (file->fa.flags & H5FD_LOG_TIME_SEEK) H5_timer_start(&seek_timer); if (HDlseek(file->fd, (HDoff_t)addr, SEEK_SET) < 0) HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") /* Stop timer for seek() call */ if (file->fa.flags & H5FD_LOG_TIME_SEEK) H5_timer_stop(&seek_timer); /* Add to the number of seeks, when tracking that */ if (file->fa.flags & H5FD_LOG_NUM_SEEK) file->total_seek_ops++; /* Add to the total seek time, when tracking that */ if (file->fa.flags & H5FD_LOG_TIME_SEEK) { H5_timer_get_times(seek_timer, &seek_times); file->total_seek_time += seek_times.elapsed; } /* Emit log string if we're tracking individual seek events. */ if (file->fa.flags & H5FD_LOG_LOC_SEEK) { HDfprintf(file->logfp, "Seek: From %10" PRIuHADDR " To %10" PRIuHADDR, file->pos, addr); /* Add the seek time, if we're tracking that. * Note that the seek time is NOT emitted for when just H5FD_LOG_TIME_SEEK * is set. */ if (file->fa.flags & H5FD_LOG_TIME_SEEK) HDfprintf(file->logfp, " (%fs @ %f)\n", seek_times.elapsed, seek_timer.initial.elapsed); else HDfprintf(file->logfp, "\n"); } } #endif /* H5_HAVE_PREADWRITE */ /* Start timer for write operation */ if (file->fa.flags & H5FD_LOG_TIME_WRITE) H5_timer_start(&write_timer); /* * Write the data, being careful of interrupted system calls and partial * results */ while (size > 0) { h5_posix_io_t bytes_in = 0; /* # of bytes to write */ h5_posix_io_ret_t bytes_wrote = -1; /* # of bytes written */ /* Trying to write more bytes than the return type can handle is * undefined behavior in POSIX. */ if (size > H5_POSIX_MAX_IO_BYTES) bytes_in = H5_POSIX_MAX_IO_BYTES; else bytes_in = (h5_posix_io_t)size; do { #ifdef H5_HAVE_PREADWRITE bytes_wrote = HDpwrite(file->fd, buf, bytes_in, offset); if (bytes_wrote > 0) offset += bytes_wrote; #else bytes_wrote = HDwrite(file->fd, buf, bytes_in); #endif /* H5_HAVE_PREADWRITE */ } while (-1 == bytes_wrote && EINTR == errno); if (-1 == bytes_wrote) { /* error */ int myerrno = errno; time_t mytime = HDtime(NULL); offset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); if (file->fa.flags & H5FD_LOG_LOC_WRITE) HDfprintf(file->logfp, "Error! Writing: %10" PRIuHADDR "-%10" PRIuHADDR " (%10zu bytes)\n", orig_addr, (orig_addr + orig_size) - 1, orig_size); HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed: time = %s, filename = '%s', file descriptor = %d, errno = %d, " "error message = '%s', buf = %p, total write size = %llu, bytes this sub-write = " "%llu, bytes actually written = %llu, offset = %llu", HDctime(&mytime), file->filename, file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long long)size, (unsigned long long)bytes_in, (unsigned long long)bytes_wrote, (unsigned long long)offset); } /* end if */ HDassert(bytes_wrote > 0); HDassert((size_t)bytes_wrote <= size); size -= (size_t)bytes_wrote; addr += (haddr_t)bytes_wrote; buf = (const char *)buf + bytes_wrote; } /* end while */ /* Stop timer for write operation */ if (file->fa.flags & H5FD_LOG_TIME_WRITE) H5_timer_stop(&write_timer); /* Add to the number of writes, when tracking that */ if (file->fa.flags & H5FD_LOG_NUM_WRITE) file->total_write_ops++; /* Add to the total write time, when tracking that */ if (file->fa.flags & H5FD_LOG_TIME_WRITE) { H5_timer_get_times(write_timer, &write_times); file->total_write_time += write_times.elapsed; } /* Log information about the write */ if (file->fa.flags & H5FD_LOG_LOC_WRITE) { HDfprintf(file->logfp, "%10" PRIuHADDR "-%10" PRIuHADDR " (%10zu bytes) (%s) Written", orig_addr, (orig_addr + orig_size) - 1, orig_size, flavors[type]); /* Check if this is the first write into a "default" section, grabbed by the metadata aggregation * algorithm */ if (file->fa.flags & H5FD_LOG_FLAVOR) { if ((H5FD_mem_t)file->flavor[orig_addr] == H5FD_MEM_DEFAULT) { HDmemset(&file->flavor[orig_addr], (int)type, orig_size); HDfprintf(file->logfp, " (fresh)"); } } /* Add the write time, if we're tracking that. * Note that the write time is NOT emitted for when just H5FD_LOG_TIME_WRITE * is set. */ if (file->fa.flags & H5FD_LOG_TIME_WRITE) HDfprintf(file->logfp, " (%fs @ %f)\n", write_times.elapsed, write_timer.initial.elapsed); else HDfprintf(file->logfp, "\n"); } /* Update current position and eof */ file->pos = addr; file->op = OP_WRITE; if (file->pos > file->eof) file->eof = file->pos; done: if (ret_value < 0) { /* Reset last file I/O information */ file->pos = HADDR_UNDEF; file->op = OP_UNKNOWN; } FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_write() */ /*------------------------------------------------------------------------- * Function: H5FD__log_truncate * * Purpose: Makes sure that the true file size is the same (or larger) * than the end-of-address. * * Return: SUCCEED/FAIL * * Programmer: Robb Matzke * Wednesday, August 4, 1999 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_truncate(H5FD_t *_file, hid_t H5_ATTR_UNUSED dxpl_id, hbool_t H5_ATTR_UNUSED closing) { H5FD_log_t *file = (H5FD_log_t *)_file; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC HDassert(file); /* Extend the file to make sure it's large enough */ if (!H5F_addr_eq(file->eoa, file->eof)) { H5_timer_t trunc_timer; /* Timer for truncate operation */ H5_timevals_t trunc_times; /* Elapsed time for truncate operation */ /* Initialize timer */ H5_timer_init(&trunc_timer); /* Start timer for truncate operation */ if (file->fa.flags & H5FD_LOG_TIME_TRUNCATE) H5_timer_start(&trunc_timer); #ifdef H5_HAVE_WIN32_API { LARGE_INTEGER li; /* 64-bit (union) integer for SetFilePointer() call */ DWORD dwPtrLow; /* Low-order pointer bits from SetFilePointer() * Only used as an error code here. */ /* Windows uses this odd QuadPart union for 32/64-bit portability */ li.QuadPart = (__int64)file->eoa; /* Extend the file to make sure it's large enough. * * Since INVALID_SET_FILE_POINTER can technically be a valid return value * from SetFilePointer(), we also need to check GetLastError(). */ dwPtrLow = SetFilePointer(file->hFile, li.LowPart, &li.HighPart, FILE_BEGIN); if (INVALID_SET_FILE_POINTER == dwPtrLow) { DWORD dwError; /* DWORD error code from GetLastError() */ dwError = GetLastError(); if (dwError != NO_ERROR) HGOTO_ERROR(H5E_FILE, H5E_FILEOPEN, FAIL, "unable to set file pointer") } if (0 == SetEndOfFile(file->hFile)) HGOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to extend file properly") } #else /* H5_HAVE_WIN32_API */ /* Truncate/extend the file */ if (-1 == HDftruncate(file->fd, (HDoff_t)file->eoa)) HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to extend file properly") #endif /* H5_HAVE_WIN32_API */ /* Stop timer for truncate operation */ if (file->fa.flags & H5FD_LOG_TIME_TRUNCATE) H5_timer_stop(&trunc_timer); /* Add to the number of truncates, when tracking that */ if (file->fa.flags & H5FD_LOG_NUM_TRUNCATE) file->total_truncate_ops++; /* Add to the total truncate time, when tracking that */ if (file->fa.flags & H5FD_LOG_TIME_TRUNCATE) { H5_timer_get_times(trunc_timer, &trunc_times); file->total_truncate_time += trunc_times.elapsed; } /* Emit log string if we're tracking individual truncate events. */ if (file->fa.flags & H5FD_LOG_TRUNCATE) { HDfprintf(file->logfp, "Truncate: To %10" PRIuHADDR, file->eoa); /* Add the truncate time, if we're tracking that. * Note that the truncate time is NOT emitted for when just H5FD_LOG_TIME_TRUNCATE * is set. */ if (file->fa.flags & H5FD_LOG_TIME_TRUNCATE) HDfprintf(file->logfp, " (%fs @ %f)\n", trunc_times.elapsed, trunc_timer.initial.elapsed); else HDfprintf(file->logfp, "\n"); } /* Update the eof value */ file->eof = file->eoa; /* Reset last file I/O information */ file->pos = HADDR_UNDEF; file->op = OP_UNKNOWN; } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_truncate() */ /*------------------------------------------------------------------------- * Function: H5FD__log_lock * * Purpose: Place a lock on the file * * Return: Success: SUCCEED * Failure: FAIL, file not locked. * * Programmer: Vailin Choi; May 2013 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_lock(H5FD_t *_file, hbool_t rw) { H5FD_log_t *file = (H5FD_log_t *)_file; /* VFD file struct */ int lock_flags; /* file locking flags */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC /* Sanity check */ HDassert(file); /* Set exclusive or shared lock based on rw status */ lock_flags = rw ? LOCK_EX : LOCK_SH; /* Place a non-blocking lock on the file */ if (HDflock(file->fd, lock_flags | LOCK_NB) < 0) { if (file->ignore_disabled_file_locks && ENOSYS == errno) { /* When errno is set to ENOSYS, the file system does not support * locking, so ignore it. */ errno = 0; } else HSYS_GOTO_ERROR(H5E_VFL, H5E_CANTLOCKFILE, FAIL, "unable to lock file") } done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_lock() */ /*------------------------------------------------------------------------- * Function: H5FD__log_unlock * * Purpose: Remove the existing lock on the file * * Return: SUCCEED/FAIL * * Programmer: Vailin Choi; May 2013 * *------------------------------------------------------------------------- */ static herr_t H5FD__log_unlock(H5FD_t *_file) { H5FD_log_t *file = (H5FD_log_t *)_file; /* VFD file struct */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC HDassert(file); if (HDflock(file->fd, LOCK_UN) < 0) { if (file->ignore_disabled_file_locks && ENOSYS == errno) { /* When errno is set to ENOSYS, the file system does not support * locking, so ignore it. */ errno = 0; } else HSYS_GOTO_ERROR(H5E_VFL, H5E_CANTUNLOCKFILE, FAIL, "unable to unlock file") } done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_unlock() */ /*------------------------------------------------------------------------- * Function: H5FD__log_delete * * Purpose: Delete a file * * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ static herr_t H5FD__log_delete(const char *filename, hid_t H5_ATTR_UNUSED fapl_id) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC HDassert(filename); if (HDremove(filename) < 0) HSYS_GOTO_ERROR(H5E_VFL, H5E_CANTDELETEFILE, FAIL, "unable to delete file") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5FD__log_delete() */