/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * This file contains public declarations for the H5F module. */ #ifndef H5Fpublic_H #define H5Fpublic_H /* Public header files needed by this file */ #include "H5public.h" #include "H5ACpublic.h" #include "H5Ipublic.h" /* When this header is included from a private header, don't make calls to H5check() */ #undef H5CHECK #ifndef H5private_H #define H5CHECK H5check(), #else /* H5private_H */ #define H5CHECK #endif /* H5private_H */ /* When this header is included from a private HDF5 header, don't make calls to H5open() */ #undef H5OPEN #ifndef H5private_H #define H5OPEN H5open(), #else /* H5private_H */ #define H5OPEN #endif /* H5private_H */ /* * These are the bits that can be passed to the `flags' argument of * H5Fcreate() and H5Fopen(). Use the bit-wise OR operator (|) to combine * them as needed. As a side effect, they call H5check_version() to make sure * that the application is compiled with a version of the hdf5 header files * which are compatible with the library to which the application is linked. * We're assuming that these constants are used rather early in the hdf5 * session. */ #define H5F_ACC_RDONLY (H5CHECK H5OPEN 0x0000u) /**< Absence of RDWR: read-only */ #define H5F_ACC_RDWR (H5CHECK H5OPEN 0x0001u) /**< Open for read and write */ #define H5F_ACC_TRUNC (H5CHECK H5OPEN 0x0002u) /**< Overwrite existing files */ #define H5F_ACC_EXCL (H5CHECK H5OPEN 0x0004u) /**< Fail if file already exists*/ /* NOTE: 0x0008u was H5F_ACC_DEBUG, now deprecated */ #define H5F_ACC_CREAT (H5CHECK H5OPEN 0x0010u) /**< Create non-existing files */ #define H5F_ACC_SWMR_WRITE \ (H5CHECK 0x0020u) /**< Indicate that this file is open for writing in a \ * single-writer/multi-reader (SWMR) scenario. \ * Note that the process(es) opening the file for reading \ * must open the file with #H5F_ACC_RDONLY and use the \ * #H5F_ACC_SWMR_READ access flag. */ #define H5F_ACC_SWMR_READ \ (H5CHECK 0x0040u) /**< Indicate that this file is open for reading in a \ * single-writer/multi-reader (SWMR) scenario. Note that \ * the process(es) opening the file for SWMR reading must \ * also open the file with the #H5F_ACC_RDONLY flag. */ /** * Default property list identifier * * \internal Value passed to H5Pset_elink_acc_flags to cause flags to be taken from the parent file. * \internal ignore setting on lapl */ #define H5F_ACC_DEFAULT (H5CHECK H5OPEN 0xffffu) /* Flags for H5Fget_obj_count() & H5Fget_obj_ids() calls */ #define H5F_OBJ_FILE (0x0001u) /**< File objects */ #define H5F_OBJ_DATASET (0x0002u) /**< Dataset objects */ #define H5F_OBJ_GROUP (0x0004u) /**< Group objects */ #define H5F_OBJ_DATATYPE (0x0008u) /**< Named datatype objects */ #define H5F_OBJ_ATTR (0x0010u) /**< Attribute objects */ #define H5F_OBJ_ALL (H5F_OBJ_FILE | H5F_OBJ_DATASET | H5F_OBJ_GROUP | H5F_OBJ_DATATYPE | H5F_OBJ_ATTR) #define H5F_OBJ_LOCAL \ (0x0020u) /**< Restrict search to objects opened through current file ID \ (as opposed to objects opened through any file ID accessing this file) */ #define H5F_FAMILY_DEFAULT 0 /* (hsize_t) */ #ifdef H5_HAVE_PARALLEL /** * Use this constant string as the MPI_Info key to set H5Fmpio debug flags. * To turn on H5Fmpio debug flags, set the MPI_Info value with this key to * have the value of a string consisting of the characters that turn on the * desired flags. */ #define H5F_MPIO_DEBUG_KEY "H5F_mpio_debug_key" #endif /* H5_HAVE_PARALLEL */ /** * The scope of an operation such as H5Fflush(), e.g., * a single file vs. a set of mounted files */ typedef enum H5F_scope_t { H5F_SCOPE_LOCAL = 0, /**< The specified file handle only */ H5F_SCOPE_GLOBAL = 1 /**< The entire virtual file */ } H5F_scope_t; /** * Unlimited file size for H5Pset_external() */ #define H5F_UNLIMITED ((hsize_t)(-1L)) /** * How does file close behave? */ typedef enum H5F_close_degree_t { H5F_CLOSE_DEFAULT = 0, /**< Use the degree pre-defined by underlying VFD */ H5F_CLOSE_WEAK = 1, /**< File closes only after all opened objects are closed */ H5F_CLOSE_SEMI = 2, /**< If no opened objects, file is closed; otherwise, file close fails */ H5F_CLOSE_STRONG = 3 /**< If there are opened objects, close them first, then close file */ } H5F_close_degree_t; /** * Current "global" information about file */ //! typedef struct H5F_info2_t { struct { unsigned version; /**< Superblock version # */ hsize_t super_size; /**< Superblock size */ hsize_t super_ext_size; /**< Superblock extension size */ } super; struct { unsigned version; /**< Version # of file free space management */ hsize_t meta_size; /**< Free space manager metadata size */ hsize_t tot_space; /**< Amount of free space in the file */ } free; struct { unsigned version; /**< Version # of shared object header info */ hsize_t hdr_size; /**< Shared object header message header size */ H5_ih_info_t msgs_info; /**< Shared object header message index & heap size */ } sohm; } H5F_info2_t; //! /** * Types of allocation requests. The values larger than #H5FD_MEM_DEFAULT * should not change other than adding new types to the end. These numbers * might appear in files. * * \internal Please change the log VFD flavors array if you change this * enumeration. */ typedef enum H5F_mem_t { H5FD_MEM_NOLIST = -1, /**< Data should not appear in the free list. * Must be negative. */ H5FD_MEM_DEFAULT = 0, /**< Value not yet set. Can also be the * datatype set in a larger allocation * that will be suballocated by the library. * Must be zero. */ H5FD_MEM_SUPER = 1, /**< Superblock data */ H5FD_MEM_BTREE = 2, /**< B-tree data */ H5FD_MEM_DRAW = 3, /**< Raw data (content of datasets, etc.) */ H5FD_MEM_GHEAP = 4, /**< Global heap data */ H5FD_MEM_LHEAP = 5, /**< Local heap data */ H5FD_MEM_OHDR = 6, /**< Object header data */ H5FD_MEM_NTYPES /**< Sentinel value - must be last */ } H5F_mem_t; /** * Free space section information */ //! typedef struct H5F_sect_info_t { haddr_t addr; /**< Address of free space section */ hsize_t size; /**< Size of free space section */ } H5F_sect_info_t; //! /** * Library's format versions */ typedef enum H5F_libver_t { H5F_LIBVER_ERROR = -1, H5F_LIBVER_EARLIEST = 0, /**< Use the earliest possible format for storing objects */ H5F_LIBVER_V18 = 1, /**< Use the latest v18 format for storing objects */ H5F_LIBVER_V110 = 2, /**< Use the latest v110 format for storing objects */ H5F_LIBVER_V112 = 3, /**< Use the latest v112 format for storing objects */ H5F_LIBVER_NBOUNDS } H5F_libver_t; #define H5F_LIBVER_LATEST H5F_LIBVER_V112 /** * File space handling strategy */ //! typedef enum H5F_fspace_strategy_t { H5F_FSPACE_STRATEGY_FSM_AGGR = 0, /**< Mechanisms: free-space managers, aggregators, and virtual file drivers This is the library default when not set */ H5F_FSPACE_STRATEGY_PAGE = 1, /**< Mechanisms: free-space managers with embedded paged aggregation and virtual file drivers */ H5F_FSPACE_STRATEGY_AGGR = 2, /**< Mechanisms: aggregators and virtual file drivers */ H5F_FSPACE_STRATEGY_NONE = 3, /**< Mechanisms: virtual file drivers */ H5F_FSPACE_STRATEGY_NTYPES /**< Sentinel */ } H5F_fspace_strategy_t; //! /** * File space handling strategy for release 1.10.0 * * \deprecated 1.10.1 */ typedef enum H5F_file_space_type_t { H5F_FILE_SPACE_DEFAULT = 0, /**< Default (or current) free space strategy setting */ H5F_FILE_SPACE_ALL_PERSIST = 1, /**< Persistent free space managers, aggregators, virtual file driver */ H5F_FILE_SPACE_ALL = 2, /**< Non-persistent free space managers, aggregators, virtual file driver This is the library default */ H5F_FILE_SPACE_AGGR_VFD = 3, /**< Aggregators, Virtual file driver */ H5F_FILE_SPACE_VFD = 4, /**< Virtual file driver */ H5F_FILE_SPACE_NTYPES /**< Sentinel */ } H5F_file_space_type_t; //! #define H5F_NUM_METADATA_READ_RETRY_TYPES 21 /** * Data structure to report the collection of read retries for metadata items with checksum as * used by H5Fget_metadata_read_retry_info() */ typedef struct H5F_retry_info_t { unsigned nbins; uint32_t *retries[H5F_NUM_METADATA_READ_RETRY_TYPES]; } H5F_retry_info_t; //! /** * Callback for H5Pset_object_flush_cb() in a file access property list */ typedef herr_t (*H5F_flush_cb_t)(hid_t object_id, void *udata); /*********************/ /* Public Prototypes */ /*********************/ #ifdef __cplusplus extern "C" { #endif /** * \ingroup H5F * * \brief Checks if a file can be opened with a given file access property * list * * \param[in] container_name Name of a file * \fapl_id * * \return \htri_t * * \details H5Fis_accessible() checks if the file specified by \p * container_name can be opened with the file access property list * \p fapl_id. * * \note The H5Fis_accessible() function enables files to be checked with a * given file access property list, unlike H5Fis_hdf5(), which only uses * the default file driver when opening a file. * * \since 1.12.0 * */ H5_DLL htri_t H5Fis_accessible(const char *container_name, hid_t fapl_id); /** * \ingroup H5F * * \brief Creates an HDF5 file * * \param[in] filename Name of the file to create * \param[in] flags File access flags. Allowable values are: * - #H5F_ACC_TRUNC: Truncate file, if it already exists, * erasing all data previously stored in the file * - #H5F_ACC_EXCL: Fail if file already exists * \fcpl_id * \fapl_id * \return \hid_t{file} * * \details H5Fcreate() is the primary function for creating HDF5 files; it * creates a new HDF5 file with the specified name and property lists. * * The \p filename parameter specifies the name of the new file. * * The \p flags parameter specifies whether an existing file is to be * overwritten. It should be set to either #H5F_ACC_TRUNC to overwrite * an existing file or #H5F_ACC_EXCL, instructing the function to fail * if the file already exists. * * New files are always created in read-write mode, so the read-write * and read-only flags, #H5F_ACC_RDWR and #H5F_ACC_RDONLY, * respectively, are not relevant in this function. Further note that * a specification of #H5F_ACC_RDONLY will be ignored; the file will * be created in read-write mode, regardless. * * More complex behaviors of file creation and access are controlled * through the file creation and file access property lists, * \p fcpl_id and \p fapl_id, respectively. The value of #H5P_DEFAULT * for any property list value indicates that the library should use * the default values for that appropriate property list. * * The return value is a file identifier for the newly-created file; * this file identifier should be closed by calling H5Fclose() when * it is no longer needed. * * \par Example * \snippet H5F_examples.c minimal * * \note #H5F_ACC_TRUNC and #H5F_ACC_EXCL are mutually exclusive; use * exactly one. * * \note An additional flag, #H5F_ACC_DEBUG, prints debug information. This * flag can be combined with one of the above values using the bit-wise * OR operator (\c |), but it is used only by HDF5 library developers; * \Emph{it is neither tested nor supported for use in applications}. * * \attention \Bold{Special case — File creation in the case of an already-open file:} * If a file being created is already opened, by either a previous * H5Fopen() or H5Fcreate() call, the HDF5 library may or may not * detect that the open file and the new file are the same physical * file. (See H5Fopen() regarding the limitations in detecting the * re-opening of an already-open file.)\n * If the library detects that the file is already opened, * H5Fcreate() will return a failure, regardless of the use of * #H5F_ACC_TRUNC.\n * If the library does not detect that the file is already opened * and #H5F_ACC_TRUNC is not used, H5Fcreate() will return a failure * because the file already exists. Note that this is correct * behavior.\n * But if the library does not detect that the file is already * opened and #H5F_ACC_TRUNC is used, H5Fcreate() will truncate the * existing file and return a valid file identifier. Such a * truncation of a currently-opened file will almost certainly * result in errors. While unlikely, the HDF5 library may not be * able to detect, and thus report, such errors.\n * Applications should avoid calling H5Fcreate() with an already * opened file. * * \since 1.0.0 * * \see H5Fopen(), H5Fclose() * */ H5_DLL hid_t H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id); /** * \ingroup H5F * * \brief Opens an existing HDF5 file * * \param[in] filename Name of the file to be opened * \param[in] flags File access flags. Allowable values are: * - #H5F_ACC_RDWR: Allows read and write access to file * - #H5F_ACC_RDONLY: Allows read-only access to file * - #H5F_ACC_RDWR \c | #H5F_ACC_SWMR_WRITE: Indicates that * the file is open for writing in a * single-writer/multi-writer (SWMR) scenario. * - #H5F_ACC_RDONLY \c | #H5F_ACC_SWMR_READ: Indicates * that the file is open for reading in a * single-writer/multi-reader (SWMR) scenario. * - An additional flag, #H5F_ACC_DEBUG, prints debug * information. This flag can be combined with one of the * above values using the bit-wise OR operator (\c |), but * it is used only by HDF5 library developers; * \Emph{it is neither tested nor supported} for use in * applications. * \fapl_id * \return \hid_t{file} * * \details H5Fopen() is the primary function for accessing existing HDF5 files. * This function opens the named file in the specified access mode and * with the specified access property list. * * Note that H5Fopen() does not create a file if it does not already * exist; see H5Fcreate(). * * The \p filename parameter specifies the name of the file to be * opened. * * The \p fapl_id parameter specifies the file access property list. * Use of #H5P_DEFAULT specifies that default I/O access properties * are to be used. * * The \p flags parameter specifies whether the file will be opened in * read-write or read-only mode, #H5F_ACC_RDWR or #H5F_ACC_RDONLY, * respectively. More complex behaviors of file access are controlled * through the file-access property list. * * The return value is a file identifier for the open file; this file * identifier should be closed by calling H5Fclose() when it is no * longer needed. * * \par Example * \snippet H5F_examples.c open * * \note #H5F_ACC_RDWR and #H5F_ACC_RDONLY are mutually exclusive; use * exactly one. * * \attention \Bold{Special cases — Multiple opens:} A file can often be opened * with a new H5Fopen() call without closing an already-open * identifier established in a previous H5Fopen() or H5Fcreate() * call. Each such H5Fopen() call will return a unique identifier * and the file can be accessed through any of these identifiers as * long as the identifier remains valid. In such multiply-opened * cases, the open calls must use the same flags argument and the * file access property lists must use the same file close degree * property setting (see the external link discussion below and * H5Pset_fclose_degree()).\n * In some cases, such as files on a local Unix file system, the * HDF5 library can detect that a file is multiply opened and will * maintain coherent access among the file identifiers.\n * But in many other cases, such as parallel file systems or * networked file systems, it is not always possible to detect * multiple opens of the same physical file. In such cases, HDF5 * will treat the file identifiers as though they are accessing * different files and will be unable to maintain coherent access. * Errors are likely to result in these cases. While unlikely, the * HDF5 library may not be able to detect, and thus report, * such errors.\n * It is generally recommended that applications avoid multiple * opens of the same file. * * \attention \Bold{Special restriction on multiple opens of a file first * opened by means of an external link:} When an external link is * followed, the external file is always opened with the weak file * close degree property setting, #H5F_CLOSE_WEAK (see * H5Lcreate_external() and H5Pset_fclose_degree()). If the file is * reopened with H5Fopen while it remains held open from such an * external link call, the file access property list used in the * open call must include the file close degree setting * #H5F_CLOSE_WEAK or the open will fail. * * \version 1.10.0 The #H5F_ACC_SWMR_WRITE and #H5F_ACC_SWMR_READ flags were added. * * \see H5Fclose() * */ H5_DLL hid_t H5Fopen(const char *filename, unsigned flags, hid_t fapl_id); /** * \ingroup H5F * * \brief Returns a new identifier for a previously-opened HDF5 file * * \param[in] file_id Identifier of a file for which an additional identifier * is required * * \return \hid_t{file} * * \details H5Freopen() returns a new file identifier for an already-open HDF5 * file, as specified by \p file_id. Both identifiers share caches and * other information. The only difference between the identifiers is * that the new identifier is not mounted anywhere and no files are * mounted on it. * * The new file identifier should be closed by calling H5Fclose() when * it is no longer needed. * * \note Note that there is no circumstance under which H5Freopen() can * actually open a closed file; the file must already be open and have an * active \p file_id. E.g., one cannot close a file with H5Fclose() on * \p file_id then use H5Freopen() on \p file_id to reopen it. * */ H5_DLL hid_t H5Freopen(hid_t file_id); /** * \ingroup H5F * * \brief Flushes all buffers associated with a file to storage * * \loc_id{object_id} * \param[in] scope The scope of the flush action * * \return \herr_t * * \details H5Fflush() causes all buffers associated with a file to be * immediately flushed to storage without removing the data from the * cache. * * \p object_id can be any object associated with the file, including * the file itself, a dataset, a group, an attribute, or a named * datatype. * * \p scope specifies whether the scope of the flush action is * global or local. Valid values are as follows: * \scopes * * \par Example * \snippet H5F_examples.c flush * * \attention HDF5 does not possess full control over buffering. H5Fflush() * flushes the internal HDF5 buffers then asks the operating system * (the OS) to flush the system buffers for the open files. After * that, the OS is responsible for ensuring that the data is * actually flushed to disk. * */ H5_DLL herr_t H5Fflush(hid_t object_id, H5F_scope_t scope); /** * \ingroup H5F * * \brief Terminates access to an HDF5 file * * \file_id * \return \herr_t * * \details H5Fclose() terminates access to an HDF5 file (specified by * \p file_id) by flushing all data to storage. * * If this is the last file identifier open for the file and no other * access identifier is open (e.g., a dataset identifier, group * identifier, or shared datatype identifier), the file will be fully * closed and access will end. * * \par Example * \snippet H5F_examples.c minimal * * \note \Bold{Delayed close:} Note the following deviation from the * above-described behavior. If H5Fclose() is called for a file but one * or more objects within the file remain open, those objects will remain * accessible until they are individually closed. Thus, if the dataset * \c data_sample is open when H5Fclose() is called for the file * containing it, \c data_sample will remain open and accessible * (including writable) until it is explicitly closed. The file will be * automatically closed once all objects in the file have been closed.\n * Be warned, however, that there are circumstances where it is not * possible to delay closing a file. For example, an MPI-IO file close is * a collective call; all of the processes that opened the file must * close it collectively. The file cannot be closed at some time in the * future by each process in an independent fashion. Another example is * that an application using an AFS token-based file access privilege may * destroy its AFS token after H5Fclose() has returned successfully. This * would make any future access to the file, or any object within it, * illegal.\n * In such situations, applications must close all open objects in a file * before calling H5Fclose. It is generally recommended to do so in all * cases. * * \see H5Fopen() * */ H5_DLL herr_t H5Fclose(hid_t file_id); /** * \ingroup H5F * * \brief Deletes an HDF5 file * * \param[in] filename Name of the file to delete * \fapl_id * * \return \herr_t * * \details H5Fdelete() deletes an HDF5 file \p filename with a file access * property list \p fapl_id. The \p fapl_id should be configured with * the same VOL connector or VFD that was used to open the file. * * This API was introduced for use with the Virtual Object Layer * (VOL). With the VOL, HDF5 "files" can map to arbitrary storage * schemes such as object stores and relational database tables. The * data created by these implementations may be inconvenient for a * user to remove without a detailed knowledge of the storage scheme. * H5Fdelete() gives VOL connector authors the ability to add * connector-specific delete code to their connectors so that users * can remove these "files" without detailed knowledge of the storage * scheme. * * For a VOL connector, H5Fdelete() deletes the file in a way that * makes sense for the specified VOL connector. * * For the native HDF5 connector, HDF5 files will be deleted via the * VFDs, each of which will have to be modified to delete the files it * creates. * * For all implementations, H5Fdelete() will first check if the file * is an HDF5 file via H5Fis_accessible(). This is done to ensure that * H5Fdelete() cannot be used as an arbitrary file deletion call. * * \since 1.12.0 * */ H5_DLL herr_t H5Fdelete(const char *filename, hid_t fapl_id); /** * \ingroup H5F * * \brief Returns a file creation property list identifier * * \file_id * \return \hid_t{file creation property list} * * \details H5Fget_create_plist() returns the file creation property list * identifier identifying the creation properties used to create this * file. This function is useful for duplicating properties when * creating another file. * * The creation property list identifier should be released with * H5Pclose(). * */ H5_DLL hid_t H5Fget_create_plist(hid_t file_id); /** * \ingroup H5F * * \brief Returns a file access property list identifier * * \file_id * \return \hid_t{file access property list} * * \details H5Fget_access_plist() returns the file access property list * identifier of the specified file. * */ H5_DLL hid_t H5Fget_access_plist(hid_t file_id); /** * \ingroup H5F * * \brief Determines the read/write or read-only status of a file * * \file_id * \param[out] intent Access mode flag as originally passed with H5Fopen() * * \return \herr_t * * \details Given the identifier of an open file, \p file_id, H5Fget_intent() * retrieves the intended access mode" flag passed with H5Fopen() when * the file was opened. * * The value of the flag is returned in \p intent. Valid values are as * follows: * \file_access * * \note The function will not return an error if intent is NULL; it will * simply do nothing. * * \version 1.10.0 Function enhanced to work with SWMR functionality. * * \since 1.8.0 * */ H5_DLL herr_t H5Fget_intent(hid_t file_id, unsigned *intent); /** * \ingroup H5F * * \brief Retrieves a file's file number that uniquely identifies an open file * * \file_id * \param[out] fileno A buffer to hold the file number * * \return \herr_t * * \details H5Fget_fileno() retrieves a file number for a file specified by the * file identifier \p file_id and the pointer \p fnumber to the file * number. * * \since 1.12.0 * */ H5_DLL herr_t H5Fget_fileno(hid_t file_id, unsigned long *fileno); /** * \ingroup H5F * * \brief Returns the number of open object identifiers for an open file * * \file_id or #H5F_OBJ_ALL for all currently-open HDF5 files * \param[in] types Type of object for which identifiers are to be returned * * \return Returns the number of open objects if successful; otherwise returns * a negative value. * * \details Given the identifier of an open file, file_id, and the desired * object types, types, H5Fget_obj_count() returns the number of open * object identifiers for the file. * * To retrieve a count of open identifiers for open objects in all * HDF5 application files that are currently open, pass the value * #H5F_OBJ_ALL in \p file_id. * * The types of objects to be counted are specified in types as * follows: * \obj_types * * Multiple object types can be combined with the * logical \c OR operator (|). For example, the expression * \c (#H5F_OBJ_DATASET|#H5F_OBJ_GROUP) would call for datasets and * groups. * * \version 1.6.8, 1.8.2 Function return type changed to \c ssize_t. * \version 1.6.5 #H5F_OBJ_LOCAL has been added as a qualifier on the types * of objects to be counted. #H5F_OBJ_LOCAL restricts the * search to objects opened through current file identifier. * */ H5_DLL ssize_t H5Fget_obj_count(hid_t file_id, unsigned types); /** *------------------------------------------------------------------------- * \ingroup H5F * * \brief Returns a list of open object identifiers * * \file_id or #H5F_OBJ_ALL for all currently-open HDF5 files * \param[in] types Type of object for which identifiers are to be returned * \param[in] max_objs Maximum number of object identifiers to place into * \p obj_id_list * \param[out] obj_id_list Pointer to the returned buffer of open object * identifiers * * \return Returns number of objects placed into \p obj_id_list if successful; * otherwise returns a negative value. * * \details Given the file identifier \p file_id and the type of objects to be * identified, types, H5Fget_obj_ids() returns the list of identifiers * for all open HDF5 objects fitting the specified criteria. * * To retrieve identifiers for open objects in all HDF5 application * files that are currently open, pass the value #H5F_OBJ_ALL in * \p file_id. * * The types of object identifiers to be retrieved are specified in * types using the codes listed for the same parameter in * H5Fget_obj_count(). * * To retrieve a count of open objects, use the H5Fget_obj_count() * function. This count can be used to set the \p max_objs parameter. * * \version 1.8.2 Function return type changed to \c ssize_t and \p * max_objs parameter datatype changed to \c size_t. * \version 1.6.8 Function return type changed to \c ssize_t and \p * max_objs parameter datatype changed to \c size_t. * \since 1.6.0 * */ H5_DLL ssize_t H5Fget_obj_ids(hid_t file_id, unsigned types, size_t max_objs, hid_t *obj_id_list); /** * \ingroup H5F * * \brief Returns pointer to the file handle from the virtual file driver * * \file_id * \fapl_id{fapl} * \param[out] file_handle Pointer to the file handle being used by the * low-level virtual file driver * * \return \herr_t * * \details Given the file identifier \p file_id and the file access property * list \p fapl_id, H5Fget_vfd_handle() returns a pointer to the file * handle from the low-level file driver currently being used by the * HDF5 library for file I/O. * * \note For most drivers, the value of \p fapl_id will be #H5P_DEFAULT. For * the \c FAMILY or \c MULTI drivers, this value should be defined * through the property list functions: H5Pset_family_offset() for the * \c FAMILY driver and H5Pset_multi_type() for the \c MULTI driver * * \since 1.6.0 * */ H5_DLL herr_t H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle); /** * \ingroup H5F * * \brief Mounts an HDF5 file * * \loc_id{loc} * \param[in] name Name of the group onto which the file specified by \p child * is to be mounted * \file_id{child} * \param[in] plist File mount property list identifier. Pass #H5P_DEFAULT! * * \return \herr_t * * \details H5Fmount() mounts the file specified by \p child onto the object * specified by \p loc and \p name using the mount properties \p plist * If the object specified by \p loc is a dataset, named datatype or * attribute, then the file will be mounted at the location where the * attribute, dataset, or named datatype is attached. * * \par Example * \snippet H5F_examples.c mount * * \note To date, no file mount properties have been defined in HDF5. The * proper value to pass for \p plist is #H5P_DEFAULT, indicating the * default file mount property list. * */ H5_DLL herr_t H5Fmount(hid_t loc, const char *name, hid_t child, hid_t plist); /** * \ingroup H5F * * \brief Unounts an HDF5 file * * \loc_id{loc} * \param[in] name Name of the mount point * * \return \herr_t * * \details Given a mount point, H5Funmount() dissociates the mount point's * file from the file mounted there. This function does not close * either file. * * The mount point can be either the group in the parent or the root * group of the mounted file (both groups have the same name). If the * mount point was opened before the mount then it is the group in the * parent; if it was opened after the mount then it is the root group * of the child. * */ H5_DLL herr_t H5Funmount(hid_t loc, const char *name); /** * \ingroup H5F * * \brief Returns the amount of free space in a file (in bytes) * * \file_id * * \return Returns the amount of free space in the file if successful; * otherwise returns a negative value. * * \details Given the identifier of an open file, \p file_id, * H5Fget_freespace() returns the amount of space that is unused by * any objects in the file. * * The interpretation of this number depends on the configured free space * management strategy. For example, if the HDF5 library only tracks free * space in a file from a file open or create until that file is closed, * then this routine will report the free space that has been created * during that interval. * * \since 1.6.1 * */ H5_DLL hssize_t H5Fget_freespace(hid_t file_id); /** * \ingroup H5F * * \brief Returns the size of an HDF5 file (in bytes) * * \file_id * \param[out] size Size of the file, in bytes * * \return \herr_t * * \details H5Fget_filesize() returns the size of the HDF5 file specified by * \p file_id. * * The returned size is that of the entire file, as opposed to only * the HDF5 portion of the file. I.e., size includes the user block, * if any, the HDF5 portion of the file, and any data that may have * been appended beyond the data written through the HDF5 library. * * \since 1.6.3 * */ H5_DLL herr_t H5Fget_filesize(hid_t file_id, hsize_t *size); /** * \ingroup H5F * * \brief Retrieves the file's end-of-allocation (EOA) * * \file_id * \param[out] eoa The file's EOA * * \return \herr_t * * \details H5Fget_eoa() retrieves the file's EOA and returns it in the * parameter eoa. * * \since 1.10.2 * */ H5_DLL herr_t H5Fget_eoa(hid_t file_id, haddr_t *eoa); /** * \ingroup H5F * * \brief Sets the file' EOA to the maximum of (EOA, EOF) + increment * * \file_id * \param[in] increment The number of bytes to be added to the maximum of * (EOA, EOF) * * \return \herr_t * * \details H5Fincrement_filesize() sets the file's EOA to the maximum of (EOA, * EOF) + \p increment. The EOA is the end-of-file address stored in * the file's superblock while EOF is the file's actual end-of-file. * * \since 1.10.2 * */ H5_DLL herr_t H5Fincrement_filesize(hid_t file_id, hsize_t increment); /** * \ingroup H5F * * \brief Retrieves a copy of the image of an existing, open file * * \file_id * \param[out] buf_ptr Pointer to the buffer into which the image of the * HDF5 file is to be copied. If \p buf_ptr is NULL, * no data will be copied but the function’s return value * will still indicate the buffer size required (or a * negative value on error). * \param[out] buf_len Size of the supplied buffer * * \return ssize_t * * \details H5Fget_file_image() retrieves a copy of the image of an existing, * open file. This routine can be used with files opened using the * SEC2 (or POSIX), STDIO, and Core (or Memory) virtual file drivers * (VFDs). * * If the return value of H5Fget_file_image() is a positive value, it * will be the length in bytes of the buffer required to store the * file image. So if the file size is unknown, it can be safely * determined with an initial H5Fget_file_image() call with buf_ptr * set to NULL. The file image can then be retrieved with a second * H5Fget_file_image() call with \p buf_len set to the initial call’s * return value. * * While the current file size can also be retrieved with * H5Fget_filesize(), that call may produce a larger value than is * needed. The value returned by H5Fget_filesize() includes the user * block, if it exists, and any unallocated space at the end of the * file. It is safe in all situations to get the file size with * H5Fget_file_image() and it often produces a value that is more * appropriate for the size of a file image buffer. * * \note \Bold{Recommended Reading:} This function is part of the file image * operations feature set. It is highly recommended to study the guide * \ref_file_image_ops before using this feature set. * * \attention H5Pget_file_image() will fail, returning a negative value, if the * file is too large for the supplied buffer. * * \see H5LTopen_file_image(), H5Pset_file_image(), H5Pget_file_image(), * H5Pset_file_image_callbacks(), H5Pget_file_image_callbacks() * * \since 1.8.0 * */ H5_DLL ssize_t H5Fget_file_image(hid_t file_id, void *buf_ptr, size_t buf_len); /** * \ingroup MDC * * \brief Obtains current metadata cache configuration for target file * * \file_id * \param[in,out] config_ptr Pointer to the H5AC_cache_config_t instance in which * the current metadata cache configuration is to be * reported. The fields of this structure are discussed * \ref H5AC-cache-config-t "here". * \return \herr_t * * \note The \c in direction applies only to the H5AC_cache_config_t::version * field. All other fields are out parameters. * * \details H5Fget_mdc_config() loads the current metadata cache configuration * into the instance of H5AC_cache_config_t pointed to by the \p config_ptr * parameter.\n * The fields of the H5AC_cache_config_t structure are shown below: * \snippet H5ACpublic.h H5AC_cache_config_t_snip * \click4more * * \since 1.8.0 * */ H5_DLL herr_t H5Fget_mdc_config(hid_t file_id, H5AC_cache_config_t *config_ptr); /** * \ingroup MDC * * \brief Attempts to configure metadata cache of target file * * \file_id * \param[in,out] config_ptr Pointer to the H5AC_cache_config_t instance * containing the desired configuration. * The fields of this structure are discussed * \ref H5AC-cache-config-t "here". * \return \herr_t * * \details H5Fset_mdc_config() attempts to configure the file's metadata cache * according configuration supplied in \p config_ptr. * \snippet H5ACpublic.h H5AC_cache_config_t_snip * \click4more * * \since 1.8.0 * */ H5_DLL herr_t H5Fset_mdc_config(hid_t file_id, H5AC_cache_config_t *config_ptr); /** * \ingroup MDC * * \brief Obtains target file's metadata cache hit rate * * \file_id * \param[out] hit_rate_ptr Pointer to the double in which the hit rate is returned. Note that * \p hit_rate_ptr is undefined if the API call fails * \return \herr_t * * \details H5Fget_mdc_hit_rate() queries the metadata cache of the target file to obtain its hit rate * \Code{(cache hits / (cache hits + cache misses))} since the last time hit rate statistics * were reset. If the cache has not been accessed since the last time the hit rate stats were * reset, the hit rate is defined to be 0.0. * * The hit rate stats can be reset either manually (via H5Freset_mdc_hit_rate_stats()), or * automatically. If the cache's adaptive resize code is enabled, the hit rate stats will be * reset once per epoch. If they are reset manually as well, the cache may behave oddly. * * See the overview of the metadata cache in the special topics section of the user manual for * details on the metadata cache and its adaptive resize algorithms. * */ H5_DLL herr_t H5Fget_mdc_hit_rate(hid_t file_id, double *hit_rate_ptr); /** * \ingroup MDC * * \brief Obtains current metadata cache size data for specified file * * \file_id * \param[out] max_size_ptr Pointer to the location in which the current cache maximum size is to be * returned, or NULL if this datum is not desired * \param[out] min_clean_size_ptr Pointer to the location in which the current cache minimum clean * size is to be returned, or NULL if that datum is not desired * \param[out] cur_size_ptr Pointer to the location in which the current cache size is to be returned, * or NULL if that datum is not desired * \param[out] cur_num_entries_ptr Pointer to the location in which the current number of entries in * the cache is to be returned, or NULL if that datum is not desired * \returns \herr_t * * \details H5Fget_mdc_size() queries the metadata cache of the target file for the desired size * information, and returns this information in the locations indicated by the pointer * parameters. If any pointer parameter is NULL, the associated data is not returned. * * If the API call fails, the values returned via the pointer parameters are undefined. * * If adaptive cache resizing is enabled, the cache maximum size and minimum clean size * may change at the end of each epoch. Current size and current number of entries can * change on each cache access. * * Current size can exceed maximum size under certain conditions. See the overview of the * metadata cache in the special topics section of the user manual for a discussion of this. * */ H5_DLL herr_t H5Fget_mdc_size(hid_t file_id, size_t *max_size_ptr, size_t *min_clean_size_ptr, size_t *cur_size_ptr, int *cur_num_entries_ptr); /** * \ingroup MDC * * \brief Resets hit rate statistics counters for the target file * * \file_id * \returns \herr_t * * \details * \parblock * H5Freset_mdc_hit_rate_stats() resets the hit rate statistics counters in the metadata cache * associated with the specified file. * * If the adaptive cache resizing code is enabled, the hit rate statistics are reset at the beginning * of each epoch. This API call allows you to do the same thing from your program. * * The adaptive cache resizing code may behave oddly if you use this call when adaptive cache resizing * is enabled. However, the call should be useful if you choose to control metadata cache size from your * program. * * See \ref_mdc_in_hdf5 for details about the metadata cache and the adaptive cache resizing * algorithms. If you have not read, understood, and thought about the material covered in that * documentation, * you should not be using this API call. * \endparblock * */ H5_DLL herr_t H5Freset_mdc_hit_rate_stats(hid_t file_id); /** * \ingroup H5F * * \brief Retrieves name of file to which object belongs * * \obj_id * \param[out] name Buffer for the file name * \param[in] size Size, in bytes, of the \p name buffer * * \return Returns the length of the file name if successful; otherwise returns * a negative value. * * \details H5Fget_name() retrieves the name of the file to which the object \p * obj_id belongs. The object can be a file, group, dataset, * attribute, or named datatype. * * Up to \p size characters of the file name are returned in \p name; * additional characters, if any, are not returned to the user * application. * * If the length of the name, which determines the required value of * size, is unknown, a preliminary H5Fget_name() call can be made by * setting \p name to NULL. The return value of this call will be the * size of the file name; that value plus one (1) can then be assigned * to size for a second H5Fget_name() call, which will retrieve the * actual name. (The value passed in with the parameter \p size must * be one greater than size in bytes of the actual name in order to * accommodate the null terminator; if \p size is set to the exact * size of the name, the last byte passed back will contain the null * terminator and the last character will be missing from the name * passed back to the calling application.) * * If an error occurs, the buffer pointed to by \p name is unchanged * and the function returns a negative value. * * \since 1.6.3 * */ H5_DLL ssize_t H5Fget_name(hid_t obj_id, char *name, size_t size); /** * \ingroup H5F * * \brief Retrieves name of file to which object belongs * * \fgdta_obj_id * \param[out] file_info Buffer for global file information * * \return \herr_t * * \details H5Fget_info2() returns global information for the file associated * with the object identifier \p obj_id in the H5F_info2_t \c struct * named \p file_info. * * \p obj_id is an identifier for any object in the file of interest. * * H5F_info2_t struct is defined in H5Fpublic.h as follows: * \snippet this H5F_info2_t_snip * * The \c super sub-struct contains the following information: * \li \c vers is the version number of the superblock. * \li \c super_size is the size of the superblock. * \li \c super_ext_size is the size of the superblock extension. * * The \c free sub-struct contains the following information: * \li vers is the version number of the free-space manager. * \li \c hdr_size is the size of the free-space manager header. * \li \c tot_space is the total amount of free space in the file. * * The \c sohm sub-struct contains shared object header message * information as follows: * \li \c vers is the version number of the shared object header information. * \li \c hdr_size is the size of the shared object header message. * \li \c msgs_info is an H5_ih_info_t struct defined in H5public.h as * follows: \snippet H5public.h H5_ih_info_t_snip * \li \p index_size is the summed size of all the shared object * header indexes. Each index might be either a B-tree or * a list. * \li \p heap_size is the size of the heap. * * * \since 1.10.0 * */ H5_DLL herr_t H5Fget_info2(hid_t obj_id, H5F_info2_t *file_info); /** * \ingroup SWMR * * \brief Retrieves the collection of read retries for metadata entries with checksum * * \file_id * \param[out] info Struct containing the collection of read retries for metadata * entries with checksum * \return \herr_t\n * * \details \Bold{Failure Modes:} * \li When the input identifier is not a file identifier. * \li When the pointer to the output structure is NULL. * \li When the memory allocation for \p retries failed. * * \details H5Fget_metadata_read_retry_info() retrieves information regarding the number * of read retries for metadata entries with checksum for the file \p file_id. * This information is reported in the H5F_retry_info_t struct defined in * H5Fpublic.h as follows: * \snippet this H5F_retry_info_t_snip * \c nbins is the number of bins for each \c retries[i] of metadata entry \c i. * It is calculated based on the current number of read attempts used in the * library and logarithmic base 10. * * If read retries are incurred for a metadata entry \c i, the library will * allocate memory for \Code{retries[i] (nbins * sizeof(uint32_t)} and store * the collection of retries there. If there are no retries for a metadata entry * \c i, \Code{retries[i]} will be NULL. After a call to this routine, users should * free each \Code{retries[i]} that is non-NULL, otherwise resource leak will occur. * * For the library default read attempts of 100 for SWMR access, nbins will be 2 * as depicted below: * \li \Code{retries[i][0]} is the number of 1 to 9 read retries. * \li \Code{retries[i][1]} is the number of 10 to 99 read retries. * For the library default read attempts of 1 for non-SWMR access, \c nbins will * be 0 and each \Code{retries[i]} will be NULL. * * The following table lists the 21 metadata entries of \Code{retries[]}: *
Index for \Code{retries[]} | *Metadata entries* | *
---|---|
0 | Object header (version 2) |
1 | Object header chunk (version 2) |
2 | B-tree header (version 2) |
3 | B-tree internal node (version 2) |
4 | B-tree leaf node (version 2) |
5 | Fractal heap header |
6 | Fractal heap direct block (optional checksum) |
7 | Fractal heap indirect block |
8 | Free-space header |
9 | Free-space sections |
10 | Shared object header message table |
11 | Shared message record list |
12 | Extensive array header |
13 | Extensive array index block |
14 | Extensive array super block |
15 | Extensive array data block |
16 | Extensive array data block page |
17 | Fixed array super block |
18 | Fixed array data block |
19 | Fixed array data block page |
20 | File's superblock (version 2) |
* All entries are of version 0 (zero) unless indicated * otherwise. |