/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * Programmer: Robb Matzke * Friday, March 27, 1998 * * Purpose: Operations on the global heap. The global heap is the set of * all collections and each collection contains one or more * global heap objects. An object belongs to exactly one * collection. A collection is treated as an atomic entity for * the purposes of I/O and caching. * * Each file has a small cache of global heap collections called * the CWFS list and recently accessed collections with free * space appear on this list. As collections are accessed the * collection is moved toward the front of the list. New * collections are added to the front of the list while old * collections are added to the end of the list. * * The collection model reduces the overhead which would be * incurred if the global heap were a single object, and the * CWFS list allows the library to cheaply choose a collection * for a new object based on object size, amount of free space * in the collection, and temporal locality. */ #define H5F_PACKAGE /*suppress error about including H5Fpkg */ #define H5HG_PACKAGE /*suppress error about including H5HGpkg */ /* Pablo information */ /* (Put before include files to avoid problems with inline functions) */ #define PABLO_MASK H5HG_mask #include "H5private.h" /* Generic Functions */ #include "H5ACprivate.h" /* Metadata cache */ #include "H5Eprivate.h" /* Error handling */ #include "H5Fpkg.h" /* File access */ #include "H5FLprivate.h" /* Free lists */ #include "H5HGpkg.h" /* Global heaps */ #include "H5MFprivate.h" /* File memory management */ #include "H5MMprivate.h" /* Memory management */ /* Private macros */ /* * Global heap collection version. */ #define H5HG_VERSION 1 /* * All global heap collections are at least this big. This allows us to read * most collections with a single read() since we don't have to read a few * bytes of header to figure out the size. If the heap is larger than this * then a second read gets the rest after we've decoded the header. */ #define H5HG_MINSIZE 4096 /* * Limit global heap collections to the some reasonable size. This is * fairly arbitrary, but needs to be small enough that no more than H5HG_MAXIDX * objects will be allocated from a single heap. */ #define H5HG_MAXSIZE 65536 /* * Maximum length of the CWFS list, the list of remembered collections that * have free space. */ #define H5HG_NCWFS 16 /* * The maximum number of links allowed to a global heap object. */ #define H5HG_MAXLINK 65535 /* * The maximum number of indices allowed in a global heap object. */ #define H5HG_MAXIDX 65535 /* * The size of the collection header, always a multiple of the alignment so * that the stuff that follows the header is aligned. */ #define H5HG_SIZEOF_HDR(f) \ H5HG_ALIGN(4 + /*magic number */ \ 1 + /*version number */ \ 3 + /*reserved */ \ H5F_SIZEOF_SIZE(f)) /*collection size */ /* * The initial guess for the number of messages in a collection. We assume * that all objects in that collection are zero length, giving the maximum * possible number of objects in the collection. The collection itself has * some overhead and each message has some overhead. The `+2' accounts for * rounding and for the free space object. */ #define H5HG_NOBJS(f,z) (int)((((z)-H5HG_SIZEOF_HDR(f))/ \ H5HG_SIZEOF_OBJHDR(f)+2)) /* * Makes a global heap object pointer undefined, or checks whether one is * defined. */ #define H5HG_undef(HGP) ((HGP)->idx=0) #define H5HG_defined(HGP) ((HGP)->idx!=0) /* Private typedefs */ /* PRIVATE PROTOTYPES */ static haddr_t H5HG_create(H5F_t *f, hid_t dxpl_id, size_t size); #ifdef NOT_YET static void *H5HG_peek(H5F_t *f, hid_t dxpl_id, H5HG_t *hobj); #endif /* NOT_YET */ /* Metadata cache callbacks */ static H5HG_heap_t *H5HG_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void *udata1, void *udata2); static herr_t H5HG_flush(H5F_t *f, hid_t dxpl_id, hbool_t dest, haddr_t addr, H5HG_heap_t *heap); static herr_t H5HG_dest(H5F_t *f, H5HG_heap_t *heap); static herr_t H5HG_clear(H5F_t *f, H5HG_heap_t *heap, hbool_t destroy); static herr_t H5HG_compute_size(H5F_t *f, H5HG_heap_t *heap, size_t *size_ptr); /* * H5HG inherits cache-like properties from H5AC */ const H5AC_class_t H5AC_GHEAP[1] = {{ H5AC_GHEAP_ID, (H5AC_load_func_t)H5HG_load, (H5AC_flush_func_t)H5HG_flush, (H5AC_dest_func_t)H5HG_dest, (H5AC_clear_func_t)H5HG_clear, (H5AC_size_func_t)H5HG_compute_size, }}; /* Declare a free list to manage the H5HG_t struct */ H5FL_DEFINE_STATIC(H5HG_heap_t); /* Declare a free list to manage sequences of H5HG_obj_t's */ H5FL_SEQ_DEFINE_STATIC(H5HG_obj_t); /* Declare a PQ free list to manage heap chunks */ H5FL_BLK_DEFINE_STATIC(heap_chunk); /*------------------------------------------------------------------------- * Function: H5HG_create * * Purpose: Creates a global heap collection of the specified size. If * SIZE is less than some minimum it will be readjusted. The * new collection is allocated in the file and added to the * beginning of the CWFS list. * * Return: Success: Ptr to a cached heap. The pointer is valid * only until some other hdf5 library function * is called. * * Failure: NULL * * Programmer: Robb Matzke * Friday, March 27, 1998 * * Modifications: * * John Mainzer 5/26/04 * Modified function to return the disk address of the new * global heap collection, or HADDR_UNDEF on failure. This * is necessary, as in some cases (i.e. flexible parallel) * H5AC_set() will imediately flush and destroy the in memory * version of the new collection. For the same reason, I * moved the code which places the new collection on the cwfs * list to just before the call to H5AC_set(). * *------------------------------------------------------------------------- */ static haddr_t H5HG_create (H5F_t *f, hid_t dxpl_id, size_t size) { H5HG_heap_t *heap = NULL; haddr_t ret_value = HADDR_UNDEF; uint8_t *p = NULL; haddr_t addr; size_t n; FUNC_ENTER_NOAPI(H5HG_create, HADDR_UNDEF); /* Check args */ assert (f); if (sizeaddr = addr; heap->size = size; heap->cache_info.is_dirty = TRUE; if (NULL==(heap->chunk = H5FL_BLK_MALLOC (heap_chunk,size))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, HADDR_UNDEF, \ "memory allocation failed"); heap->nalloc = H5HG_NOBJS (f, size); heap->next_idx = 1; /* skip index 0, which is used for the free object */ if (NULL==(heap->obj = H5FL_SEQ_MALLOC (H5HG_obj_t,heap->nalloc))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, HADDR_UNDEF, \ "memory allocation failed"); /* Initialize the header */ HDmemcpy (heap->chunk, H5HG_MAGIC, H5HG_SIZEOF_MAGIC); p = heap->chunk + H5HG_SIZEOF_MAGIC; *p++ = H5HG_VERSION; *p++ = 0; /*reserved*/ *p++ = 0; /*reserved*/ *p++ = 0; /*reserved*/ H5F_ENCODE_LENGTH (f, p, size); /* * Padding so free space object is aligned. If malloc returned memory * which was always at least H5HG_ALIGNMENT aligned then we could just * align the pointer, but this might not be the case. */ n = H5HG_ALIGN(p-heap->chunk) - (p-heap->chunk); #ifdef OLD_WAY /* Don't bother zeroing out the rest of the info in the heap -QAK */ HDmemset(p, 0, n); #endif /* OLD_WAY */ p += n; /* The freespace object */ heap->obj[0].size = size - H5HG_SIZEOF_HDR(f); assert(H5HG_ISALIGNED(heap->obj[0].size)); heap->obj[0].nrefs = 0; heap->obj[0].begin = p; UINT16ENCODE(p, 0); /*object ID*/ UINT16ENCODE(p, 0); /*reference count*/ UINT32ENCODE(p, 0); /*reserved*/ H5F_ENCODE_LENGTH (f, p, heap->obj[0].size); #ifdef OLD_WAY /* Don't bother zeroing out the rest of the info in the heap -QAK */ HDmemset (p, 0, (size_t)((heap->chunk+heap->size) - p)); #endif /* OLD_WAY */ /* Add this heap to the beginning of the CWFS list */ if (NULL==f->shared->cwfs) { f->shared->cwfs = H5MM_malloc (H5HG_NCWFS * sizeof(H5HG_heap_t*)); if (NULL==(f->shared->cwfs)) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, HADDR_UNDEF, \ "memory allocation failed"); f->shared->cwfs[0] = heap; f->shared->ncwfs = 1; } else { HDmemmove (f->shared->cwfs+1, f->shared->cwfs, MIN (f->shared->ncwfs, H5HG_NCWFS-1)*sizeof(H5HG_heap_t*)); f->shared->cwfs[0] = heap; f->shared->ncwfs = MIN (H5HG_NCWFS, f->shared->ncwfs+1); } /* Add the heap to the cache */ if (H5AC_set (f, dxpl_id, H5AC_GHEAP, addr, heap)<0) HGOTO_ERROR (H5E_HEAP, H5E_CANTINIT, HADDR_UNDEF, \ "unable to cache global heap collection"); ret_value = addr; done: if ( ( ! ( H5F_addr_defined(addr) ) ) && ( heap ) ) { if ( H5HG_dest(f,heap) < 0 ) { HDONE_ERROR(H5E_HEAP, H5E_CANTFREE, HADDR_UNDEF, \ "unable to destroy global heap collection"); } } FUNC_LEAVE_NOAPI(ret_value); } /* H5HG_create() */ /*------------------------------------------------------------------------- * Function: H5HG_load * * Purpose: Loads a global heap collection from disk. * * Return: Success: Ptr to a global heap collection. * * Failure: NULL * * Programmer: Robb Matzke * Friday, March 27, 1998 * * Modifications: * Robb Matzke, 1999-07-28 * The ADDR argument is passed by value. * * Quincey Koziol, 2002-7-180 * Added dxpl parameter to allow more control over I/O from metadata * cache. *------------------------------------------------------------------------- */ static H5HG_heap_t * H5HG_load (H5F_t *f, hid_t dxpl_id, haddr_t addr, const void UNUSED * udata1, void UNUSED * udata2) { H5HG_heap_t *heap = NULL; uint8_t *p = NULL; int i; size_t nalloc, need; size_t max_idx=0; /* The maximum index seen */ H5HG_heap_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(H5HG_load, NULL); /* check arguments */ assert (f); assert (H5F_addr_defined (addr)); assert (!udata1); assert (!udata2); /* Read the initial 4k page */ if (NULL==(heap = H5FL_CALLOC (H5HG_heap_t))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed"); heap->addr = addr; if (NULL==(heap->chunk = H5FL_BLK_MALLOC (heap_chunk,H5HG_MINSIZE))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed"); if (H5F_block_read(f, H5FD_MEM_GHEAP, addr, H5HG_MINSIZE, dxpl_id, heap->chunk)<0) HGOTO_ERROR (H5E_HEAP, H5E_READERROR, NULL, "unable to read global heap collection"); /* Magic number */ if (HDmemcmp (heap->chunk, H5HG_MAGIC, H5HG_SIZEOF_MAGIC)) HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL, "bad global heap collection signature"); p = heap->chunk + H5HG_SIZEOF_MAGIC; /* Version */ if (H5HG_VERSION!=*p++) HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL, "wrong version number in global heap"); /* Reserved */ p += 3; /* Size */ H5F_DECODE_LENGTH (f, p, heap->size); assert (heap->size>=H5HG_MINSIZE); /* * If we didn't read enough in the first try, then read the rest of the * collection now. */ if (heap->size > H5HG_MINSIZE) { haddr_t next_addr = addr + (hsize_t)H5HG_MINSIZE; if (NULL==(heap->chunk = H5FL_BLK_REALLOC (heap_chunk, heap->chunk, heap->size))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed"); if (H5F_block_read (f, H5FD_MEM_GHEAP, next_addr, (heap->size-H5HG_MINSIZE), dxpl_id, heap->chunk+H5HG_MINSIZE)<0) HGOTO_ERROR (H5E_HEAP, H5E_READERROR, NULL, "unable to read global heap collection"); } /* Decode each object */ p = heap->chunk + H5HG_SIZEOF_HDR (f); nalloc = H5HG_NOBJS (f, heap->size); if (NULL==(heap->obj = H5FL_SEQ_MALLOC (H5HG_obj_t,nalloc))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed"); heap->obj[0].size=heap->obj[0].nrefs=0; heap->obj[0].begin=NULL; heap->nalloc = nalloc; while (pchunk+heap->size) { if (p+H5HG_SIZEOF_OBJHDR(f)>heap->chunk+heap->size) { /* * The last bit of space is too tiny for an object header, so we * assume that it's free space. */ assert (NULL==heap->obj[0].begin); heap->obj[0].size = (heap->chunk+heap->size) - p; heap->obj[0].begin = p; p += heap->obj[0].size; } else { unsigned idx; uint8_t *begin = p; UINT16DECODE (p, idx); /* Check if we need more room to store heap objects */ if(idx>=heap->nalloc) { size_t new_alloc; /* New allocation number */ H5HG_obj_t *new_obj; /* New array of object descriptions */ /* Determine the new number of objects to index */ new_alloc=MAX(heap->nalloc*2,(idx+1)); /* Reallocate array of objects */ if (NULL==(new_obj = H5FL_SEQ_REALLOC (H5HG_obj_t, heap->obj, new_alloc))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed"); /* Update heap information */ heap->nalloc=new_alloc; heap->obj=new_obj; } /* end if */ UINT16DECODE (p, heap->obj[idx].nrefs); p += 4; /*reserved*/ H5F_DECODE_LENGTH (f, p, heap->obj[idx].size); heap->obj[idx].begin = begin; /* * The total storage size includes the size of the object header * and is zero padded so the next object header is properly * aligned. The last bit of space is the free space object whose * size is never padded and already includes the object header. */ if (idx>0) { need = H5HG_SIZEOF_OBJHDR(f) + H5HG_ALIGN(heap->obj[idx].size); /* Check for "gap" in index numbers (caused by deletions) and fill in heap object values */ if(idx>(max_idx+1)) HDmemset(&heap->obj[max_idx+1],0,sizeof(H5HG_obj_t)*(idx-(max_idx+1))); max_idx=idx; } else { need = heap->obj[idx].size; } p = begin + need; } } assert(p==heap->chunk+heap->size); assert(H5HG_ISALIGNED(heap->obj[0].size)); /* Set the next index value to use */ if(max_idx>0) heap->next_idx=max_idx+1; else heap->next_idx=1; /* * Add the new heap to the CWFS list, removing some other entry if * necessary to make room. We remove the right-most entry that has less * free space than this heap. */ if (heap->obj[0].size>0) { if (!f->shared->cwfs) { f->shared->cwfs = H5MM_malloc (H5HG_NCWFS*sizeof(H5HG_heap_t*)); if (NULL==f->shared->cwfs) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed"); f->shared->ncwfs = 1; f->shared->cwfs[0] = heap; } else if (H5HG_NCWFS==f->shared->ncwfs) { for (i=H5HG_NCWFS-1; i>=0; --i) { if (f->shared->cwfs[i]->obj[0].size < heap->obj[0].size) { HDmemmove (f->shared->cwfs+1, f->shared->cwfs, i * sizeof(H5HG_heap_t*)); f->shared->cwfs[0] = heap; break; } } } else { HDmemmove (f->shared->cwfs+1, f->shared->cwfs, f->shared->ncwfs*sizeof(H5HG_heap_t*)); f->shared->ncwfs += 1; f->shared->cwfs[0] = heap; } } ret_value = heap; done: if (!ret_value && heap) { if(H5HG_dest(f,heap)<0) HDONE_ERROR(H5E_HEAP, H5E_CANTFREE, NULL, "unable to destroy global heap collection"); } FUNC_LEAVE_NOAPI(ret_value); } /*------------------------------------------------------------------------- * Function: H5HG_flush * * Purpose: Flushes a global heap collection from memory to disk if it's * dirty. Optionally deletes teh heap from memory. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Friday, March 27, 1998 * * Modifications: * Robb Matzke, 1999-07-28 * The ADDR argument is passed by value. * * Quincey Koziol, 2002-7-180 * Added dxpl parameter to allow more control over I/O from metadata * cache. *------------------------------------------------------------------------- */ static herr_t H5HG_flush (H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H5HG_heap_t *heap) { herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5HG_flush, FAIL); /* Check arguments */ assert (f); assert (H5F_addr_defined (addr)); assert (H5F_addr_eq (addr, heap->addr)); assert (heap); if (heap->cache_info.is_dirty) { if (H5F_block_write (f, H5FD_MEM_GHEAP, addr, heap->size, dxpl_id, heap->chunk)<0) HGOTO_ERROR (H5E_HEAP, H5E_WRITEERROR, FAIL, "unable to write global heap collection to file"); heap->cache_info.is_dirty = FALSE; } if (destroy) { if(H5HG_dest(f,heap)<0) HGOTO_ERROR(H5E_HEAP, H5E_CANTFREE, FAIL, "unable to destroy global heap collection"); } done: FUNC_LEAVE_NOAPI(ret_value); } /*------------------------------------------------------------------------- * Function: H5HG_dest * * Purpose: Destroys a global heap collection in memory * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Wednesday, January 15, 2003 * * Modifications: * *------------------------------------------------------------------------- */ static herr_t H5HG_dest (H5F_t *f, H5HG_heap_t *heap) { int i; FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5HG_dest); /* Check arguments */ assert (heap); /* Verify that node is clean */ assert (heap->cache_info.is_dirty==FALSE); for (i=0; ishared->ncwfs; i++) { if (f->shared->cwfs[i]==heap) { f->shared->ncwfs -= 1; HDmemmove (f->shared->cwfs+i, f->shared->cwfs+i+1, (f->shared->ncwfs-i) * sizeof(H5HG_heap_t*)); break; } } heap->chunk = H5FL_BLK_FREE(heap_chunk,heap->chunk); heap->obj = H5FL_SEQ_FREE(H5HG_obj_t,heap->obj); H5FL_FREE (H5HG_heap_t,heap); FUNC_LEAVE_NOAPI(SUCCEED); } /* H5HG_dest() */ /*------------------------------------------------------------------------- * Function: H5HG_clear * * Purpose: Mark a global heap in memory as non-dirty. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Thursday, March 20, 2003 * * Modifications: * *------------------------------------------------------------------------- */ static herr_t H5HG_clear(H5F_t *f, H5HG_heap_t *heap, hbool_t destroy) { herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT(H5HG_clear); /* Check arguments */ assert (heap); /* Mark heap as clean */ heap->cache_info.is_dirty = FALSE; if (destroy) if (H5HG_dest(f, heap) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTFREE, FAIL, "unable to destroy global heap collection"); done: FUNC_LEAVE_NOAPI(ret_value); } /* H5HG_clear() */ /*------------------------------------------------------------------------- * Function: H5HG_compute_size * * Purpose: Compute the size in bytes of the specified instance of * H5HG_heap_t on disk, and return it in *len_ptr. On failure, * the value of *len_ptr is undefined. * * Return: Non-negative on success/Negative on failure * * Programmer: John Mainzer * 5/13/04 * * Modifications: * *------------------------------------------------------------------------- */ static herr_t H5HG_compute_size(H5F_t UNUSED *f, H5HG_heap_t *heap, size_t *size_ptr) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5HG_compute_size); /* Check arguments */ HDassert(heap); HDassert(size_ptr); *size_ptr = heap->size; FUNC_LEAVE_NOAPI(SUCCEED); } /* H5HG_compute_size() */ /*------------------------------------------------------------------------- * Function: H5HG_alloc * * Purpose: Given a heap with enough free space, this function will split * the free space to make a new empty heap object and initialize * the header. SIZE is the exact size of the object data to be * stored. It will be increased to make room for the object * header and then rounded up for alignment. * * Return: Success: The heap object ID of the new object. * * Failure: 0 * * Programmer: Robb Matzke * Friday, March 27, 1998 * * Modifications: * *------------------------------------------------------------------------- */ static unsigned H5HG_alloc (H5F_t *f, H5HG_heap_t *heap, size_t size) { unsigned idx; uint8_t *p = NULL; size_t need = H5HG_SIZEOF_OBJHDR(f) + H5HG_ALIGN(size); unsigned ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5HG_alloc); /* Check args */ assert (heap); assert (heap->obj[0].size>=need); /* * Find an ID for the new object. ID zero is reserved for the free space * object. */ if(heap->next_idxnext_idx++; } /* end if */ else { for (idx=1; idxnalloc; idx++) if (NULL==heap->obj[idx].begin) break; } /* end else */ /* Check if we need more room to store heap objects */ if(idx>=heap->nalloc) { size_t new_alloc; /* New allocation number */ H5HG_obj_t *new_obj; /* New array of object descriptions */ /* Determine the new number of objects to index */ new_alloc=MAX(heap->nalloc*2,(idx+1)); assert(new_alloc<=(H5HG_MAXIDX+1)); /* Reallocate array of objects */ if (NULL==(new_obj = H5FL_SEQ_REALLOC (H5HG_obj_t, heap->obj, new_alloc))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, 0, "memory allocation failed"); /* Update heap information */ heap->nalloc=new_alloc; heap->obj=new_obj; assert(heap->nalloc>heap->next_idx); } /* end if */ /* Initialize the new object */ heap->obj[idx].nrefs = 0; heap->obj[idx].size = size; heap->obj[idx].begin = heap->obj[0].begin; p = heap->obj[idx].begin; UINT16ENCODE(p, idx); UINT16ENCODE(p, 0); /*nrefs*/ UINT32ENCODE(p, 0); /*reserved*/ H5F_ENCODE_LENGTH (f, p, size); /* Fix the free space object */ if (need==heap->obj[0].size) { /* * All free space has been exhausted from this collection. */ heap->obj[0].size = 0; heap->obj[0].begin = NULL; } else if (heap->obj[0].size-need >= H5HG_SIZEOF_OBJHDR (f)) { /* * Some free space remains and it's larger than a heap object header, * so write the new free heap object header to the heap. */ heap->obj[0].size -= need; heap->obj[0].begin += need; p = heap->obj[0].begin; UINT16ENCODE(p, 0); /*id*/ UINT16ENCODE(p, 0); /*nrefs*/ UINT32ENCODE(p, 0); /*reserved*/ H5F_ENCODE_LENGTH (f, p, heap->obj[0].size); assert(H5HG_ISALIGNED(heap->obj[0].size)); } else { /* * Some free space remains but it's smaller than a heap object header, * so we don't write the header. */ heap->obj[0].size -= need; heap->obj[0].begin += need; assert(H5HG_ISALIGNED(heap->obj[0].size)); } /* Mark the heap as dirty */ heap->cache_info.is_dirty = TRUE; /* Set the return value */ ret_value=idx; done: FUNC_LEAVE_NOAPI(ret_value); } /*------------------------------------------------------------------------- * Function: H5HG_extend * * Purpose: Extend a heap to hold an object of SIZE bytes. * SIZE is the exact size of the object data to be * stored. It will be increased to make room for the object * header and then rounded up for alignment. * * Return: Success: Non-negative * * Failure: Negative * * Programmer: Quincey Koziol * Saturday, June 12, 2004 * * Modifications: * *------------------------------------------------------------------------- */ static herr_t H5HG_extend (H5F_t *f, H5HG_heap_t *heap, size_t size) { size_t need; /* Actual space needed to store object */ size_t old_size; /* Previous size of the heap's chunk */ uint8_t *new_chunk=NULL; /* Pointer to new chunk information */ uint8_t *p = NULL; /* Pointer to raw heap info */ unsigned u; /* Local index variable */ herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5HG_extend); /* Check args */ assert (f); assert (heap); /* Compute total space need to add to this heap */ need = H5HG_SIZEOF_OBJHDR(f) + H5HG_ALIGN(size); /* Decrement the amount needed in the heap by the amount of free space available */ assert(need>heap->obj[0].size); need -= heap->obj[0].size; /* Don't do anything less than double the size of the heap */ need = MAX(heap->size,need); /* Extend the space allocated for this heap on disk */ if(H5MF_extend(f,H5FD_MEM_GHEAP,heap->addr,(hsize_t)heap->size,(hsize_t)need)<0) HGOTO_ERROR (H5E_HEAP, H5E_NOSPACE, FAIL, "can't extend heap on disk"); /* Re-allocate the heap information in memory */ if (NULL==(new_chunk = H5FL_BLK_REALLOC (heap_chunk, heap->chunk, heap->size+need))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "new heap allocation failed"); /* Adjust the size of the heap */ old_size=heap->size; heap->size+=need; /* Encode the new size of the heap */ p = new_chunk + H5HG_SIZEOF_MAGIC + 1 /* version */ + 3 /* reserved */; H5F_ENCODE_LENGTH (f, p, heap->size); /* Move the pointers to the existing objects to their new locations */ for (u=0; unalloc; u++) if(heap->obj[u].begin) heap->obj[u].begin = new_chunk + (heap->obj[u].begin - heap->chunk); /* Update the heap chunk pointer now */ heap->chunk=new_chunk; /* Update the free space information for the heap */ heap->obj[0].size+=need; if(heap->obj[0].begin==NULL) heap->obj[0].begin=heap->chunk+old_size; p = heap->obj[0].begin; UINT16ENCODE(p, 0); /*id*/ UINT16ENCODE(p, 0); /*nrefs*/ UINT32ENCODE(p, 0); /*reserved*/ H5F_ENCODE_LENGTH (f, p, heap->obj[0].size); assert(H5HG_ISALIGNED(heap->obj[0].size)); /* Mark the heap as dirty */ heap->cache_info.is_dirty = TRUE; done: FUNC_LEAVE_NOAPI(ret_value); } /* end H5HG_extend() */ /*------------------------------------------------------------------------- * Function: H5HG_insert * * Purpose: A new object is inserted into the global heap. It will be * placed in the first collection on the CWFS list which has * enough free space and that collection will be advanced one * position in the list. If no collection on the CWFS list has * enough space then a new collection will be created. * * It is legal to push a zero-byte object onto the heap to get * the reference count features of heap objects. * * Return: Success: Non-negative, and a heap object handle returned * through the HOBJ pointer. * * Failure: Negative * * Programmer: Robb Matzke * Friday, March 27, 1998 * * Modifications: * * John Mainzer -- 5/24/04 * The function used to modify the heap without protecting * the relevant collection first. I did a half assed job * of fixing the problem, which should hold until we try to * support multi-threading. At that point it will have to * be done right. * * See in line comment of this date for more details. * * John Mainzer - 5/26/04 * Modified H5HG_create() to return the disk address of the * new collection, instead of the address of its * representation in core. This was necessary as in FP * mode, the cache will immediately flush and destroy any * entry inserted in it via H5AC_set(). I then modified * this function to account for the change in H5HG_create(). * *------------------------------------------------------------------------- */ herr_t H5HG_insert (H5F_t *f, hid_t dxpl_id, size_t size, void *obj, H5HG_t *hobj/*out*/) { size_t need; /*total space needed for object */ int cwfsno; unsigned idx; haddr_t addr = HADDR_UNDEF; H5HG_heap_t *heap = NULL; hbool_t found=0; /* Flag to indicate a heap with enough space was found */ herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5HG_insert, FAIL); /* Check args */ assert (f); assert (0==size || obj); assert (hobj); if (0==(f->intent & H5F_ACC_RDWR)) HGOTO_ERROR (H5E_HEAP, H5E_WRITEERROR, FAIL, "no write intent on file"); /* Find a large enough collection on the CWFS list */ need = H5HG_SIZEOF_OBJHDR(f) + H5HG_ALIGN(size); /* Note that we don't have metadata cache locks on the entries in * f->shared->cwfs. * * In the current situation, this doesn't matter, as we are single * threaded, and as best I can tell, entries are added to and deleted * from f->shared->cwfs as they are added to and deleted from the * metadata cache. * * To be proper, we should either lock each entry in f->shared->cwfs * as we examine it, or lock the whole array. However, at present * I don't see the point as there will be significant overhead, * and protecting and unprotecting all the collections in the global * heap on a regular basis will skew the replacement policy. * * However, there is a bigger issue -- as best I can tell, we only look * for free space in global heap chunks that are in cache. If we can't * find any, we allocate a new chunk. This may be a problem in FP mode, * as the metadata cache is disabled. Do we allocate a new heap * collection for every entry in this case? * * Note that all this comes from a cursory read of the source. Don't * take any of it as gospel. * JRM - 5/24/04 */ for (cwfsno=0; cwfsnoshared->ncwfs; cwfsno++) { if (f->shared->cwfs[cwfsno]->obj[0].size>=need) { addr = f->shared->cwfs[cwfsno]->addr; found=1; break; } /* end if */ } /* end for */ /* * If we didn't find any collection with enough free space the check if * we can extend any of the collections to make enough room. */ if (!found) { size_t new_need; for (cwfsno=0; cwfsnoshared->ncwfs; cwfsno++) { new_need = need; new_need -= f->shared->cwfs[cwfsno]->obj[0].size; new_need = MAX(f->shared->cwfs[cwfsno]->size, new_need); if((f->shared->cwfs[cwfsno]->size+need)<=H5HG_MAXSIZE && H5MF_can_extend(f,H5FD_MEM_GHEAP,f->shared->cwfs[cwfsno]->addr,(hsize_t)f->shared->cwfs[cwfsno]->size,(hsize_t)new_need)) { if(H5HG_extend(f,f->shared->cwfs[cwfsno],size)<0) HGOTO_ERROR (H5E_HEAP, H5E_CANTINIT, FAIL, "unable to extend global heap collection"); addr = f->shared->cwfs[cwfsno]->addr; found=1; break; } /* end if */ } /* end for */ } /* end if */ /* * If we didn't find any collection with enough free space then allocate a * new collection large enough for the message plus the collection header. */ if (!found) { addr = H5HG_create(f, dxpl_id, need+H5HG_SIZEOF_HDR (f)); if ( ! ( H5F_addr_defined(addr) ) ) { HGOTO_ERROR (H5E_HEAP, H5E_CANTINIT, FAIL, \ "unable to allocate a global heap collection"); } cwfsno = 0; } /* end if */ else { /* Move the collection forward in the CWFS list, if it's not * already at the front */ if (cwfsno>0) { H5HG_heap_t *tmp = f->shared->cwfs[cwfsno]; f->shared->cwfs[cwfsno] = f->shared->cwfs[cwfsno-1]; f->shared->cwfs[cwfsno-1] = tmp; --cwfsno; } /* end if */ } /* end else */ HDassert(H5F_addr_defined(addr)); if ( NULL == (heap = H5AC_protect(f, dxpl_id, H5AC_GHEAP, addr, NULL, NULL, H5AC_WRITE)) ) { HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to load heap"); } /* Split the free space to make room for the new object */ idx = H5HG_alloc (f, heap, size); assert (idx>0); /* Copy data into the heap */ if(size>0) { HDmemcpy(heap->obj[idx].begin+H5HG_SIZEOF_OBJHDR(f), obj, size); #ifdef OLD_WAY /* Don't bother zeroing out the rest of the info in the heap -QAK */ HDmemset(heap->obj[idx].begin+H5HG_SIZEOF_OBJHDR(f)+size, 0, need-(H5HG_SIZEOF_OBJHDR(f)+size)); #endif /* OLD_WAY */ } /* end if */ heap->cache_info.is_dirty = TRUE; /* Return value */ hobj->addr = heap->addr; hobj->idx = idx; done: if ( heap && H5AC_unprotect(f, dxpl_id, H5AC_GHEAP, heap->addr, heap, FALSE) != SUCCEED ) { HDONE_ERROR(H5E_HEAP, H5E_PROTECT, FAIL, "unable to unprotect heap."); } FUNC_LEAVE_NOAPI(ret_value); } /* H5HG_insert() */ #ifdef NOT_YET /*------------------------------------------------------------------------- * Function: H5HG_peek * * Purpose: Given an ID for a global heap object return a pointer to the * beginning of that object. This is intended for quick and * dirty access to the object; otherwise use H5HG_read(). * * Return: Success: Ptr directly into the H5AC layer for the * specified object of the global heap. The * pointer is guaranteed to be valid only until * some other hdf5 library function is called. * * Failure: NULL * * Programmer: Robb Matzke * Monday, March 30, 1998 * * Modifications: * *------------------------------------------------------------------------- */ static void * H5HG_peek (H5F_t *f, hid_t dxpl_id, H5HG_t *hobj) { H5HG_heap_t *heap = NULL; void *ret_value; int i; FUNC_ENTER_NOAPI(H5HG_peek, NULL); /* Check args */ assert (f); assert (hobj); /* Load the heap and return a pointer to the object */ if (NULL == (heap = H5AC_protect(f, dxpl_id, H5AC_GHEAP, hobj->addr, NULL, NULL, H5AC_READ))) HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL, "unable to load heap"); assert (hobj->idx>0 && hobj->idxnalloc); ret_value = heap->obj[hobj->idx].begin + H5HG_SIZEOF_OBJHDR (f); assert (ret_value); /* * Advance the heap in the CWFS list. We might have done this already * with the H5AC_protect(), but it won't hurt to do it twice. */ if (heap->obj[0].begin) { for (i=0; ishared->ncwfs; i++) { if (f->shared->cwfs[i]==heap) { if (i) { f->shared->cwfs[i] = f->shared->cwfs[i-1]; f->shared->cwfs[i-1] = heap; } break; } } } done: if (heap && H5AC_unprotect(f, dxpl_id, H5AC_GHEAP, hobj->addr, heap, FALSE)<0) HDONE_ERROR(H5E_HEAP, H5E_PROTECT, NULL, "unable to release object header"); FUNC_LEAVE_NOAPI(ret_value); } #endif /* NOT_YET */ /*------------------------------------------------------------------------- * Function: H5HG_read * * Purpose: Reads the specified global heap object into the buffer OBJECT * supplied by the caller. If the caller doesn't supply a * buffer then one will be allocated. The buffer should be * large enough to hold the result. * * Return: Success: The buffer containing the result. * * Failure: NULL * * Programmer: Robb Matzke * Monday, March 30, 1998 * * Modifications: * *------------------------------------------------------------------------- */ void * H5HG_read (H5F_t *f, hid_t dxpl_id, H5HG_t *hobj, void *object/*out*/) { H5HG_heap_t *heap = NULL; int i; size_t size; uint8_t *p = NULL; void *ret_value; FUNC_ENTER_NOAPI(H5HG_read, NULL); /* Check args */ assert (f); assert (hobj); /* Load the heap */ if (NULL == (heap = H5AC_protect(f, dxpl_id, H5AC_GHEAP, hobj->addr, NULL, NULL, H5AC_READ))) HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL, "unable to load heap"); assert (hobj->idx>0 && hobj->idxnalloc); assert (heap->obj[hobj->idx].begin); size = heap->obj[hobj->idx].size; p = heap->obj[hobj->idx].begin + H5HG_SIZEOF_OBJHDR (f); if (!object && NULL==(object = H5MM_malloc (size))) HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed"); HDmemcpy (object, p, size); /* * Advance the heap in the CWFS list. We might have done this already * with the H5AC_protect(), but it won't hurt to do it twice. */ if (heap->obj[0].begin) { for (i=0; ishared->ncwfs; i++) { if (f->shared->cwfs[i]==heap) { if (i) { f->shared->cwfs[i] = f->shared->cwfs[i-1]; f->shared->cwfs[i-1] = heap; } break; } } } /* Set return value */ ret_value=object; done: if (heap && H5AC_unprotect(f, dxpl_id, H5AC_GHEAP, hobj->addr, heap, FALSE)<0) HDONE_ERROR(H5E_HEAP, H5E_PROTECT, NULL, "unable to release object header"); FUNC_LEAVE_NOAPI(ret_value); } /*------------------------------------------------------------------------- * Function: H5HG_link * * Purpose: Adjusts the link count for a global heap object by adding * ADJUST to the current value. This function will fail if the * new link count would overflow. Nothing special happens when * the link count reaches zero; in order for a heap object to be * removed one must call H5HG_remove(). * * Return: Success: Number of links present after the adjustment. * * Failure: Negative * * Programmer: Robb Matzke * Monday, March 30, 1998 * * Modifications: * *------------------------------------------------------------------------- */ int H5HG_link (H5F_t *f, hid_t dxpl_id, const H5HG_t *hobj, int adjust) { H5HG_heap_t *heap = NULL; int ret_value; /* Return value */ FUNC_ENTER_NOAPI(H5HG_link, FAIL); /* Check args */ assert (f); assert (hobj); if (0==(f->intent & H5F_ACC_RDWR)) HGOTO_ERROR (H5E_HEAP, H5E_WRITEERROR, FAIL, "no write intent on file"); if(adjust!=0) { /* Load the heap */ if (NULL == (heap = H5AC_protect(f, dxpl_id, H5AC_GHEAP, hobj->addr, NULL, NULL, H5AC_WRITE))) HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to load heap"); assert (hobj->idx>0 && hobj->idxnalloc); assert (heap->obj[hobj->idx].begin); if (heap->obj[hobj->idx].nrefs+adjust<0) HGOTO_ERROR (H5E_HEAP, H5E_BADRANGE, FAIL, "new link count would be out of range"); if (heap->obj[hobj->idx].nrefs+adjust>H5HG_MAXLINK) HGOTO_ERROR (H5E_HEAP, H5E_BADVALUE, FAIL, "new link count would be out of range"); heap->obj[hobj->idx].nrefs += adjust; heap->cache_info.is_dirty = TRUE; } /* end if */ /* Set return value */ ret_value=heap->obj[hobj->idx].nrefs; done: if (heap && H5AC_unprotect(f, dxpl_id, H5AC_GHEAP, hobj->addr, heap, FALSE)<0) HDONE_ERROR(H5E_HEAP, H5E_PROTECT, FAIL, "unable to release object header"); FUNC_LEAVE_NOAPI(ret_value); } /*------------------------------------------------------------------------- * Function: H5HG_remove * * Purpose: Removes the specified object from the global heap. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Monday, March 30, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5HG_remove (H5F_t *f, hid_t dxpl_id, H5HG_t *hobj) { uint8_t *p=NULL, *obj_start=NULL; H5HG_heap_t *heap = NULL; size_t need; int i; unsigned u; hbool_t deleted=FALSE; /* Whether the heap gets deleted */ herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5HG_remove, FAIL); /* Check args */ assert (f); assert (hobj); if (0==(f->intent & H5F_ACC_RDWR)) HGOTO_ERROR (H5E_HEAP, H5E_WRITEERROR, FAIL, "no write intent on file"); /* Load the heap */ if (NULL == (heap = H5AC_protect(f, dxpl_id, H5AC_GHEAP, hobj->addr, NULL, NULL, H5AC_WRITE))) HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to load heap"); assert (hobj->idx>0 && hobj->idxnalloc); assert (heap->obj[hobj->idx].begin); obj_start = heap->obj[hobj->idx].begin; /* Include object header size */ need = H5HG_ALIGN(heap->obj[hobj->idx].size)+H5HG_SIZEOF_OBJHDR(f); /* Move the new free space to the end of the heap */ for (u=0; unalloc; u++) { if (heap->obj[u].begin > heap->obj[hobj->idx].begin) heap->obj[u].begin -= need; } if (NULL==heap->obj[0].begin) { heap->obj[0].begin = heap->chunk + (heap->size-need); heap->obj[0].size = need; heap->obj[0].nrefs = 0; } else { heap->obj[0].size += need; } HDmemmove (obj_start, obj_start+need, heap->size-((obj_start+need)-heap->chunk)); if (heap->obj[0].size>=H5HG_SIZEOF_OBJHDR (f)) { p = heap->obj[0].begin; UINT16ENCODE(p, 0); /*id*/ UINT16ENCODE(p, 0); /*nrefs*/ UINT32ENCODE(p, 0); /*reserved*/ H5F_ENCODE_LENGTH (f, p, heap->obj[0].size); } HDmemset (heap->obj+hobj->idx, 0, sizeof(H5HG_obj_t)); heap->cache_info.is_dirty = TRUE; if (heap->obj[0].size+H5HG_SIZEOF_HDR(f)==heap->size) { /* * The collection is empty. Remove it from the CWFS list and return it * to the file free list. */ heap->cache_info.is_dirty = FALSE; H5_CHECK_OVERFLOW(heap->size,size_t,hsize_t); H5MF_xfree(f, H5FD_MEM_GHEAP, dxpl_id, heap->addr, (hsize_t)heap->size); deleted=TRUE; /* Indicate that the object was deleted, for the unprotect call */ } else { /* * If the heap is in the CWFS list then advance it one position. The * H5AC_protect() might have done that too, but that's okay. If the * heap isn't on the CWFS list then add it to the end. */ for (i=0; ishared->ncwfs; i++) { if (f->shared->cwfs[i]==heap) { if (i) { f->shared->cwfs[i] = f->shared->cwfs[i-1]; f->shared->cwfs[i-1] = heap; } break; } } if (i>=f->shared->ncwfs) { f->shared->ncwfs = MIN (f->shared->ncwfs+1, H5HG_NCWFS); f->shared->cwfs[f->shared->ncwfs-1] = heap; } } done: if (heap && H5AC_unprotect(f, dxpl_id, H5AC_GHEAP, hobj->addr, heap, deleted) != SUCCEED) HDONE_ERROR(H5E_HEAP, H5E_PROTECT, FAIL, "unable to release object header"); FUNC_LEAVE_NOAPI(ret_value); }