/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /*------------------------------------------------------------------------- * * Created: H5O.c * Aug 5 1997 * Robb Matzke * * Purpose: Object header routines. * *------------------------------------------------------------------------- */ /****************/ /* Module Setup */ /****************/ #define H5F_PACKAGE /*suppress error about including H5Fpkg */ #define H5O_PACKAGE /*suppress error about including H5Opkg */ /* Interface initialization */ #define H5_INTERFACE_INIT_FUNC H5O_init_interface /***********/ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ #include "H5Eprivate.h" /* Error handling */ #include "H5Fpkg.h" /* File access */ #include "H5FLprivate.h" /* Free lists */ #include "H5Iprivate.h" /* IDs */ #include "H5MFprivate.h" /* File memory management */ #include "H5Opkg.h" /* Object headers */ #include "H5SMprivate.h" /* Shared object header messages */ /****************/ /* Local Macros */ /****************/ /******************/ /* Local Typedefs */ /******************/ /********************/ /* Package Typedefs */ /********************/ /********************/ /* Local Prototypes */ /********************/ static herr_t H5O_delete_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh); static const H5O_obj_class_t *H5O_obj_class(const H5O_loc_t *loc, hid_t dxpl_id); static herr_t H5O_obj_type_real(H5O_t *oh, H5O_type_t *obj_type); /*********************/ /* Package Variables */ /*********************/ /* Header message ID to class mapping */ const H5O_msg_class_t *const H5O_msg_class_g[] = { H5O_MSG_NULL, /*0x0000 Null */ H5O_MSG_SDSPACE, /*0x0001 Dataspace */ H5O_MSG_LINFO, /*0x0002 Link information */ H5O_MSG_DTYPE, /*0x0003 Datatype */ H5O_MSG_FILL, /*0x0004 Old data storage -- fill value */ H5O_MSG_FILL_NEW, /*0x0005 New data storage -- fill value */ H5O_MSG_LINK, /*0x0006 Link */ H5O_MSG_EFL, /*0x0007 Data storage -- external data files */ H5O_MSG_LAYOUT, /*0x0008 Data Layout */ #ifdef H5O_ENABLE_BOGUS H5O_MSG_BOGUS, /*0x0009 "Bogus" (for testing) */ #else /* H5O_ENABLE_BOGUS */ NULL, /*0x0009 "Bogus" (for testing) */ #endif /* H5O_ENABLE_BOGUS */ H5O_MSG_GINFO, /*0x000A Group information */ H5O_MSG_PLINE, /*0x000B Data storage -- filter pipeline */ H5O_MSG_ATTR, /*0x000C Attribute list */ H5O_MSG_NAME, /*0x000D Object name */ H5O_MSG_MTIME, /*0x000E Object modification date and time */ H5O_MSG_SHMESG, /*0x000F File-wide shared message table */ H5O_MSG_CONT, /*0x0010 Object header continuation */ H5O_MSG_STAB, /*0x0011 Symbol table */ H5O_MSG_MTIME_NEW, /*0x0012 New Object modification date and time */ H5O_MSG_BTREEK, /*0x0013 Non-default v1 B-tree 'K' values */ H5O_MSG_DRVINFO, /*0x0014 Driver info settings */ H5O_MSG_AINFO, /*0x0015 Attribute information */ }; /* Header object ID to class mapping */ /* * Initialize the object class info table. Begin with the most general types * and end with the most specific. For instance, any object that has a * datatype message is a datatype but only some of them are datasets. */ const H5O_obj_class_t *const H5O_obj_class_g[] = { H5O_OBJ_DATATYPE, /* Datatype object (H5G_TYPE - 2) */ H5O_OBJ_DATASET, /* Dataset object (H5G_DATASET - 1) */ H5O_OBJ_GROUP, /* Group object (H5G_GROUP - 0) */ }; /* Declare a free list to manage the H5O_t struct */ H5FL_DEFINE(H5O_t); /* Declare a free list to manage the H5O_mesg_t sequence information */ H5FL_SEQ_DEFINE(H5O_mesg_t); /* Declare a free list to manage the H5O_chunk_t sequence information */ H5FL_SEQ_DEFINE(H5O_chunk_t); /* Declare a free list to manage the chunk image information */ H5FL_BLK_DEFINE(chunk_image); /*****************************/ /* Library Private Variables */ /*****************************/ /* Declare external the free list for time_t's */ H5FL_EXTERN(time_t); /*******************/ /* Local Variables */ /*******************/ /*------------------------------------------------------------------------- * Function: H5O_init_interface * * Purpose: Initialize information specific to H5O interface. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Thursday, January 18, 2007 * *------------------------------------------------------------------------- */ static herr_t H5O_init_interface(void) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_init_interface) /* H5O interface sanity checks */ HDassert(H5O_MSG_TYPES == NELMTS(H5O_msg_class_g)); HDassert(sizeof(H5O_fheap_id_t) == H5O_FHEAP_ID_LEN); FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O_init_interface() */ /*------------------------------------------------------------------------- * Function: H5Oopen * * Purpose: Opens an object within an HDF5 file. * * This function opens an object in the same way that H5Gopen, * H5Topen, and H5Dopen do. However, H5Oopen doesn't require * the type of object to be known beforehand. This can be * useful in user-defined links, for instance, when only a * path is known. * * The opened object should be closed again with H5Oclose * or H5Gclose, H5Tclose, or H5Dclose. * * Return: Success: An open object identifier * Failure: Negative * * Programmer: James Laird * July 14 2006 * *------------------------------------------------------------------------- */ hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id) { H5G_loc_t loc; hid_t ret_value = FAIL; FUNC_ENTER_API(H5Oopen, FAIL) H5TRACE3("i", "i*si", loc_id, name, lapl_id); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") /* Open the object */ if((ret_value = H5O_open_name(&loc, name, lapl_id)) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object") done: FUNC_LEAVE_API(ret_value) } /* end H5Oopen() */ /*------------------------------------------------------------------------- * Function: H5Oopen_by_idx * * Purpose: Opens an object within an HDF5 file, according to the offset * within an index. * * This function opens an object in the same way that H5Gopen, * H5Topen, and H5Dopen do. However, H5Oopen doesn't require * the type of object to be known beforehand. This can be * useful in user-defined links, for instance, when only a * path is known. * * The opened object should be closed again with H5Oclose * or H5Gclose, H5Tclose, or H5Dclose. * * Return: Success: An open object identifier * Failure: Negative * * Programmer: Quincey Koziol * November 20 2006 * *------------------------------------------------------------------------- */ hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id) { H5G_loc_t loc; H5G_loc_t obj_loc; /* Location used to open group */ H5G_name_t obj_path; /* Opened object group hier. path */ H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Entry at 'name' found */ hid_t ret_value = FAIL; FUNC_ENTER_API(H5Oopen_by_idx, FAIL) H5TRACE6("i", "i*sIiIohi", loc_id, group_name, idx_type, order, n, lapl_id); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!group_name || !*group_name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") if(H5P_DEFAULT == lapl_id) lapl_id = H5P_LINK_ACCESS_DEFAULT; else if(TRUE != H5P_isa_class(lapl_id, H5P_LINK_ACCESS)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not link access property list ID") /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; obj_loc.path = &obj_path; H5G_loc_reset(&obj_loc); /* Find the object's location, according to the order in the index */ if(H5G_loc_find_by_idx(&loc, group_name, idx_type, order, n, &obj_loc/*out*/, lapl_id, H5AC_dxpl_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "group not found") loc_found = TRUE; /* Open the object */ if((ret_value = H5O_open_by_loc(&obj_loc, H5AC_dxpl_id)) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object") done: /* Release the object location if we failed after copying it */ if(ret_value < 0 && loc_found) if(H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location") FUNC_LEAVE_API(ret_value) } /* end H5Oopen_by_idx() */ /*------------------------------------------------------------------------- * Function: H5Oopen_by_addr * * Purpose: Warning! This function is EXTREMELY DANGEROUS! * Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA, * and other VERY BAD THINGS! * * This function opens an object using its address within the * HDF5 file, similar to an HDF5 hard link. The open object * is identical to an object opened with H5Oopen() and should * be closed with H5Oclose() or a type-specific closing * function (such as H5Gclose() ). * * This function is very dangerous if called on an invalid * address. For this reason, H5Oincr_refcount() should be * used to prevent HDF5 from deleting any object that is * referenced by address (e.g. by a user-defined link). * H5Odecr_refcount() should be used when the object is * no longer being referenced by address (e.g. when the UD link * is deleted). * * The address of the HDF5 file on disk has no effect on * H5Oopen_by_addr(), nor does the use of any unusual file * drivers. The "address" is really the offset within the * HDF5 file, and HDF5's file drivers will transparently * map this to an address on disk for the filesystem. * * Return: Success: An open object identifier * Failure: Negative * * Programmer: James Laird * July 14 2006 * *------------------------------------------------------------------------- */ hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr) { H5G_loc_t loc; H5G_loc_t obj_loc; /* Location used to open group */ H5G_name_t obj_path; /* Opened object group hier. path */ H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Location at 'name' found */ hid_t ret_value = FAIL; FUNC_ENTER_API(H5Oopen_by_addr, FAIL) H5TRACE2("i", "ia", loc_id, addr); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!H5F_addr_defined(addr)) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no address supplied") /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; obj_loc.path = &obj_path; H5G_loc_reset(&obj_loc); obj_loc.oloc->addr = addr; obj_loc.oloc->file = loc.oloc->file; H5G_name_reset(obj_loc.path); /* objects opened through this routine don't have a path name */ /* Open the object */ if((ret_value = H5O_open_by_loc(&obj_loc, H5AC_dxpl_id)) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object") done: if(ret_value < 0 && loc_found) if(H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location") FUNC_LEAVE_API(ret_value) } /* end H5Oopen_by_addr() */ /*------------------------------------------------------------------------- * Function: H5Oincr_refcount * * Purpose: Warning! This function is EXTREMELY DANGEROUS! * Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA, * and other VERY BAD THINGS! * * This function increments the "hard link" reference count * for an object. It should be used when a user-defined link * that references an object by address is created. When the * link is deleted, H5Odecr_refcount should be used. * * Return: Success: Non-negative * Failure: Negative * * Programmer: James Laird * July 14 2006 * *------------------------------------------------------------------------- */ herr_t H5Oincr_refcount(hid_t object_id) { H5O_loc_t *oloc; herr_t ret_value = SUCCEED; FUNC_ENTER_API(H5Oincr_refcount, FAIL) H5TRACE1("e", "i", object_id); /* Get the object's oloc so we can adjust its link count */ if((oloc = H5O_get_loc(object_id)) == NULL) HGOTO_ERROR(H5E_ATOM, H5E_BADVALUE, FAIL, "unable to get object location from ID") if(H5O_link(oloc, 1, H5AC_dxpl_id) < 0) HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed") done: FUNC_LEAVE_API(ret_value) } /* end H5O_incr_refcount() */ /*------------------------------------------------------------------------- * Function: H5Odecr_refcount * * Purpose: Warning! This function is EXTREMELY DANGEROUS! * Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA, * and other VERY BAD THINGS! * * This function decrements the "hard link" reference count * for an object. It should be used when user-defined links * that reference an object by address are deleted, and only * after H5Oincr_refcount has already been used. * * Return: Success: Non-negative * Failure: Negative * * Programmer: James Laird * July 14 2006 * *------------------------------------------------------------------------- */ herr_t H5Odecr_refcount(hid_t object_id) { H5O_loc_t *oloc; herr_t ret_value = SUCCEED; FUNC_ENTER_API(H5Odecr_refcount, FAIL) H5TRACE1("e", "i", object_id); /* Get the object's oloc so we can adjust its link count */ if((oloc = H5O_get_loc(object_id)) == NULL) HGOTO_ERROR(H5E_ATOM, H5E_BADVALUE, FAIL, "unable to get object location from ID") if(H5O_link(oloc, -1, H5AC_dxpl_id) < 0) HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed") done: FUNC_LEAVE_API(ret_value) } /* end H5Odecr_refcount() */ /*------------------------------------------------------------------------- * Function: H5Oget_info * * Purpose: Retrieve information about an object. * * Return: Success: Non-negative * Failure: Negative * * Programmer: Quincey Koziol * November 21 2006 * *------------------------------------------------------------------------- */ herr_t H5Oget_info(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id) { H5G_loc_t loc; /* Location of group */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(H5Oget_info, FAIL) H5TRACE4("e", "i*s*xi", loc_id, name, oinfo, lapl_id); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!name || !*name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name") if(!oinfo) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") if(H5P_DEFAULT == lapl_id) lapl_id = H5P_LINK_ACCESS_DEFAULT; else if(TRUE != H5P_isa_class(lapl_id, H5P_LINK_ACCESS)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not link access property list ID") /* Retrieve the object's information */ if(H5G_loc_info(&loc, name, oinfo/*out*/, lapl_id, H5AC_ind_dxpl_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "object not found") done: FUNC_LEAVE_API(ret_value) } /* end H5Oget_info() */ /*------------------------------------------------------------------------- * Function: H5Oget_info_by_idx * * Purpose: Retrieve information about an object, according to the order * of an index. * * Return: Success: Non-negative * Failure: Negative * * Programmer: Quincey Koziol * November 26 2006 * *------------------------------------------------------------------------- */ herr_t H5Oget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id) { H5G_loc_t loc; /* Location of group */ H5G_loc_t obj_loc; /* Location used to open group */ H5G_name_t obj_path; /* Opened object group hier. path */ H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Entry at 'name' found */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(H5Oget_info_by_idx, FAIL) H5TRACE7("e", "i*sIiIoh*xi", loc_id, group_name, idx_type, order, n, oinfo, lapl_id); /* Check args */ if(H5G_loc(loc_id, &loc) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location") if(!group_name || !*group_name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified") if(idx_type <= H5_INDEX_UNKNOWN || idx_type >= H5_INDEX_N) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified") if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified") if(!oinfo) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct") if(H5P_DEFAULT == lapl_id) lapl_id = H5P_LINK_ACCESS_DEFAULT; else if(TRUE != H5P_isa_class(lapl_id, H5P_LINK_ACCESS)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not link access property list ID") /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; obj_loc.path = &obj_path; H5G_loc_reset(&obj_loc); /* Find the object's location, according to the order in the index */ if(H5G_loc_find_by_idx(&loc, group_name, idx_type, order, n, &obj_loc/*out*/, lapl_id, H5AC_ind_dxpl_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "group not found") loc_found = TRUE; /* Retrieve the object's information */ if(H5O_get_info(obj_loc.oloc, oinfo, H5AC_ind_dxpl_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve object info") done: /* Release the object location */ if(loc_found && H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location") FUNC_LEAVE_API(ret_value) } /* end H5Oget_info_by_idx() */ /*------------------------------------------------------------------------- * Function: H5Oclose * * Purpose: Close an open file object. * * This is the companion to H5Oopen. It is used to close any * open object in an HDF5 file (but not IDs are that not file * objects, such as property lists and dataspaces). It has * the same effect as calling H5Gclose, H5Dclose, or H5Tclose. * * Return: Success: Non-negative * Failure: Negative * * Programmer: James Laird * July 14 2006 * *------------------------------------------------------------------------- */ herr_t H5Oclose(hid_t object_id) { herr_t ret_value = SUCCEED; FUNC_ENTER_API(H5Oclose, FAIL) H5TRACE1("e", "i", object_id); /* Get the type of the object and close it in the correct way */ switch(H5I_get_type(object_id)) { case(H5I_GROUP): case(H5I_DATATYPE): case(H5I_DATASET): if(H5I_object(object_id) == NULL) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid object") if(H5I_dec_ref(object_id) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "unable to close object") break; default: HGOTO_ERROR(H5E_ARGS, H5E_CANTRELEASE, FAIL, "not a valid file object ID (dataset, group, or datatype)") break; } /* end switch */ done: FUNC_LEAVE_API(ret_value) } /* end H5Oclose() */ /*------------------------------------------------------------------------- * Function: H5O_create * * Purpose: Creates a new object header. Allocates space for it and * then calls an initialization function. The object header * is opened for write access and should eventually be * closed by calling H5O_close(). * * Return: Success: Non-negative, the ENT argument contains * information about the object header, * including its address. * * Failure: Negative * * Programmer: Robb Matzke * matzke@llnl.gov * Aug 5 1997 * *------------------------------------------------------------------------- */ herr_t H5O_create(H5F_t *f, hid_t dxpl_id, size_t size_hint, hid_t ocpl_id, H5O_loc_t *loc/*out*/) { H5P_genplist_t *oc_plist; /* Object creation property list */ H5O_t *oh = NULL; /* Object header created */ haddr_t oh_addr; /* Address of initial object header */ size_t oh_size; /* Size of initial object header */ uint8_t oh_flags; /* Object header's initial status flags */ hbool_t store_msg_crt_idx; /* Whether to always store message creation indices for this file */ herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_NOAPI(H5O_create, FAIL) /* check args */ HDassert(f); HDassert(loc); HDassert(TRUE == H5P_isa_class(ocpl_id, H5P_OBJECT_CREATE)); /* Make certain we allocate at least a reasonable size for the object header */ size_hint = H5O_ALIGN_F(f, MAX(H5O_MIN_SIZE, size_hint)); /* Get the property list */ if(NULL == (oc_plist = H5I_object(ocpl_id))) HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a property list") /* Get any object header status flags set by properties */ if(H5P_get(oc_plist, H5O_CRT_OHDR_FLAGS_NAME, &oh_flags) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get object header flags") /* Allocate the object header and zero out header fields */ if(NULL == (oh = H5FL_CALLOC(H5O_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Initialize file-specific information for object header */ store_msg_crt_idx = H5F_STORE_MSG_CRT_IDX(f); if(H5F_USE_LATEST_FORMAT(f) || store_msg_crt_idx || (oh_flags & H5O_HDR_ATTR_CRT_ORDER_TRACKED)) oh->version = H5O_VERSION_LATEST; else oh->version = H5O_VERSION_1; oh->sizeof_size = H5F_SIZEOF_SIZE(f); oh->sizeof_addr = H5F_SIZEOF_ADDR(f); /* Set initial status flags */ oh->flags = oh_flags; /* Initialize version-specific fields */ if(oh->version > H5O_VERSION_1) { /* Initialize all time fields with current time, if we are storing them */ if(oh->flags & H5O_HDR_STORE_TIMES) oh->atime = oh->mtime = oh->ctime = oh->btime = H5_now(); else oh->atime = oh->mtime = oh->ctime = oh->btime = 0; /* Make certain attribute creation order tracking is enabled if * attributes can be shared in this file. */ if(store_msg_crt_idx) oh->flags |= H5O_HDR_ATTR_CRT_ORDER_TRACKED; /* Retrieve attribute storage phase change values from property list */ if(H5P_get(oc_plist, H5O_CRT_ATTR_MAX_COMPACT_NAME, &oh->max_compact) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get max. # of compact attributes") if(H5P_get(oc_plist, H5O_CRT_ATTR_MIN_DENSE_NAME, &oh->min_dense) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get min. # of dense attributes") /* Check for non-default attribute storage phase change values */ if(oh->max_compact != H5O_CRT_ATTR_MAX_COMPACT_DEF || oh->min_dense != H5O_CRT_ATTR_MIN_DENSE_DEF) oh->flags |= H5O_HDR_ATTR_STORE_PHASE_CHANGE; } /* end if */ else { /* Reset unused time fields */ oh->atime = oh->mtime = oh->ctime = oh->btime = 0; } /* end else */ /* Compute total size of initial object header */ /* (i.e. object header prefix and first chunk) */ oh_size = H5O_SIZEOF_HDR(oh) + size_hint; /* Allocate disk space for header and first chunk */ if(HADDR_UNDEF == (oh_addr = H5MF_alloc(f, H5FD_MEM_OHDR, dxpl_id, (hsize_t)oh_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "file allocation failed for object header header") /* Create the chunk list */ oh->nchunks = oh->alloc_nchunks = 1; if(NULL == (oh->chunk = H5FL_SEQ_MALLOC(H5O_chunk_t, (size_t)oh->alloc_nchunks))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Initialize the first chunk */ oh->chunk[0].dirty = TRUE; oh->chunk[0].addr = oh_addr; oh->chunk[0].size = oh_size; oh->chunk[0].gap = 0; /* Allocate enough space for the first chunk */ /* (including space for serializing the object header prefix */ if(NULL == (oh->chunk[0].image = H5FL_BLK_CALLOC(chunk_image, oh_size))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Put magic # for object header in first chunk */ if(oh->version > H5O_VERSION_1) HDmemcpy(oh->chunk[0].image, H5O_HDR_MAGIC, (size_t)H5O_SIZEOF_MAGIC); /* Create the message list */ oh->nmesgs = 1; oh->alloc_nmesgs = H5O_NMESGS; if(NULL == (oh->mesg = H5FL_SEQ_CALLOC(H5O_mesg_t, oh->alloc_nmesgs))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Initialize the initial "null" message, covering the entire first chunk */ oh->mesg[0].type = H5O_MSG_NULL; oh->mesg[0].dirty = TRUE; oh->mesg[0].native = NULL; oh->mesg[0].raw = oh->chunk[0].image + (H5O_SIZEOF_HDR(oh) - H5O_SIZEOF_CHKSUM_OH(oh)) + H5O_SIZEOF_MSGHDR_OH(oh); oh->mesg[0].raw_size = size_hint - H5O_SIZEOF_MSGHDR_OH(oh); oh->mesg[0].chunkno = 0; /* Cache object header */ if(H5AC_set(f, dxpl_id, H5AC_OHDR, oh_addr, oh, H5AC__NO_FLAGS_SET) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to cache object header") /* Set up object location */ loc->file = f; loc->addr = oh_addr; /* Open it */ if(H5O_open(loc) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, FAIL, "unable to open object header") done: if(ret_value < 0 && oh) if(H5O_dest(f, oh) < 0) HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_create() */ /*------------------------------------------------------------------------- * Function: H5O_open * * Purpose: Opens an object header which is described by the symbol table * entry OBJ_ENT. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Monday, January 5, 1998 * *------------------------------------------------------------------------- */ herr_t H5O_open(const H5O_loc_t *loc) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5O_open, FAIL) /* Check args */ HDassert(loc); HDassert(loc->file); #ifdef H5O_DEBUG if(H5DEBUG(O)) HDfprintf(H5DEBUG(O), "> %a\n", loc->addr); #endif /* Increment open-lock counters */ loc->file->nopen_objs++; done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_open() */ /*------------------------------------------------------------------------- * Function: H5O_open_name * * Purpose: Opens an object within an HDF5 file. * * Return: Success: An open object identifier * Failure: Negative * * Programmer: Quincey Koziol * March 5 2007 * *------------------------------------------------------------------------- */ hid_t H5O_open_name(H5G_loc_t *loc, const char *name, hid_t lapl_id) { H5G_loc_t obj_loc; /* Location used to open group */ H5G_name_t obj_path; /* Opened object group hier. path */ H5O_loc_t obj_oloc; /* Opened object object location */ hbool_t loc_found = FALSE; /* Entry at 'name' found */ hid_t ret_value = FAIL; FUNC_ENTER_NOAPI(H5O_open_name, FAIL) /* Check args */ HDassert(loc); HDassert(name && *name); /* Set up opened group location to fill in */ obj_loc.oloc = &obj_oloc; obj_loc.path = &obj_path; H5G_loc_reset(&obj_loc); /* Find the object's location */ if(H5G_loc_find(loc, name, &obj_loc/*out*/, lapl_id, H5AC_dxpl_id) < 0) HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "object not found") loc_found = TRUE; /* Open the object */ if((ret_value = H5O_open_by_loc(&obj_loc, H5AC_dxpl_id)) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object") done: if(ret_value < 0 && loc_found) if(H5G_loc_free(&obj_loc) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_open_name() */ /*------------------------------------------------------------------------- * Function: H5O_open_by_loc * * Purpose: Opens an object and returns an ID given its group loction. * * Return: Success: Open object identifier * Failure: Negative * * Programmer: James Laird * July 25 2006 * *------------------------------------------------------------------------- */ hid_t H5O_open_by_loc(const H5G_loc_t *obj_loc, hid_t dxpl_id) { const H5O_obj_class_t *obj_class; /* Class of object for location */ hid_t ret_value; /* Return value */ FUNC_ENTER_NOAPI(H5O_open_by_loc, FAIL) HDassert(obj_loc); /* Get the object class for this location */ if(NULL == (obj_class = H5O_obj_class(obj_loc->oloc, dxpl_id))) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine object class") /* Call the object class's 'open' routine */ HDassert(obj_class->open); if((ret_value = obj_class->open(obj_loc, dxpl_id)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, FAIL, "unable to open object") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_open_by_loc() */ /*------------------------------------------------------------------------- * Function: H5O_close * * Purpose: Closes an object header that was previously open. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Monday, January 5, 1998 * *------------------------------------------------------------------------- */ herr_t H5O_close(H5O_loc_t *loc) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5O_close, FAIL) /* Check args */ HDassert(loc); HDassert(loc->file); HDassert(loc->file->nopen_objs > 0); /* Decrement open-lock counters */ --loc->file->nopen_objs; #ifdef H5O_DEBUG if(H5DEBUG(O)) { if(loc->file->file_id < 0 && 1 == loc->file->shared->nrefs) HDfprintf(H5DEBUG(O), "< %a auto %lu remaining\n", loc->addr, (unsigned long)(loc->file->nopen_objs)); else HDfprintf(H5DEBUG(O), "< %a\n", loc->addr); } /* end if */ #endif /* * If the file open object count has reached the number of open mount points * (each of which has a group open in the file) attempt to close the file. */ if(loc->file->nopen_objs == loc->file->mtab.nmounts) /* Attempt to close down the file hierarchy */ if(H5F_try_close(loc->file) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTCLOSEFILE, FAIL, "problem attempting file close") /* Release location information */ if(H5O_loc_free(loc) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "problem attempting to free location") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_close() */ /*------------------------------------------------------------------------- * Function: H5O_link * * Purpose: Adjust the link count for an object header by adding * ADJUST to the link count. * * Return: Success: New link count * * Failure: Negative * * Programmer: Robb Matzke * matzke@llnl.gov * Aug 5 1997 * *------------------------------------------------------------------------- */ int H5O_link(const H5O_loc_t *loc, int adjust, hid_t dxpl_id) { H5O_t *oh = NULL; unsigned oh_flags = H5AC__NO_FLAGS_SET; /* Whether the object was deleted */ int ret_value; /* Return value */ FUNC_ENTER_NOAPI(H5O_link, FAIL) /* check args */ HDassert(loc); HDassert(loc->file); HDassert(H5F_addr_defined(loc->addr)); if(adjust != 0 && 0 == (H5F_INTENT(loc->file) & H5F_ACC_RDWR)) HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file") /* get header */ if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header") /* adjust link count */ if(adjust < 0) { /* Check for too large of an adjustment */ if((unsigned)(-adjust) > oh->nlink) HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "link count would be negative") oh->nlink += adjust; oh_flags |= H5AC__DIRTIED_FLAG; /* Check if the object should be deleted */ if(oh->nlink == 0) { /* Check if the object is still open by the user */ if(H5FO_opened(loc->file, loc->addr) != NULL) { /* Flag the object to be deleted when it's closed */ if(H5FO_mark(loc->file, loc->addr, TRUE) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't mark object for deletion") } /* end if */ else { /* Delete object right now */ if(H5O_delete_oh(loc->file, dxpl_id, oh) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't delete object from file") /* Mark the object header as deleted */ oh_flags = H5C__DELETED_FLAG; } /* end else */ } /* end if */ } else if (adjust > 0) { /* A new object, or one that will be deleted */ if(oh->nlink == 0) { /* Check if the object is current open, but marked for deletion */ if(H5FO_marked(loc->file, loc->addr) > 0) { /* Remove "delete me" flag on the object */ if(H5FO_mark(loc->file, loc->addr, FALSE) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't mark object for deletion") } /* end if */ } /* end if */ oh->nlink += adjust; oh_flags |= H5AC__DIRTIED_FLAG; } /* end if */ /* Set return value */ ret_value = oh->nlink; done: if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_link() */ /*------------------------------------------------------------------------- * Function: H5O_protect * * Purpose: Wrapper around H5AC_protect for use during a H5O_protect-> * H5O_msg_append->...->H5O_msg_append->H5O_unprotect sequence of calls * during an object's creation. * * Return: Success: Pointer to the object header structure for the * object. * * Failure: NULL * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Dec 31 2002 * *------------------------------------------------------------------------- */ H5O_t * H5O_protect(H5O_loc_t *loc, hid_t dxpl_id) { H5O_t *ret_value; /* Return value */ FUNC_ENTER_NOAPI(H5O_protect, NULL) /* check args */ HDassert(loc); HDassert(loc->file); HDassert(H5F_addr_defined(loc->addr)); /* Check for write access on the file */ if(0 == (H5F_INTENT(loc->file) & H5F_ACC_RDWR)) HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, NULL, "no write intent on file") /* Lock the object header into the cache */ if(NULL == (ret_value = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "unable to load object header") /* Mark object header as un-evictable */ if(H5AC_pin_protected_entry(loc->file, ret_value) < 0) { if(H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, ret_value, H5AC__NO_FLAGS_SET) < 0) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, NULL, "unable to release object header") HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, NULL, "unable to pin object header") } /* end if */ /* Release the object header from the cache */ if(H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, ret_value, H5AC__NO_FLAGS_SET) < 0) HGOTO_ERROR(H5E_OHDR, H5E_PROTECT, NULL, "unable to release object header") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_protect() */ /*------------------------------------------------------------------------- * Function: H5O_unprotect * * Purpose: Wrapper around H5AC_unprotect for use during a H5O_protect-> * H5O_msg_append->...->H5O_msg_append->H5O_unprotect sequence of calls * during an object's creation. * * Return: Success: Non-negative * * Failure: Negative * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Dec 31 2002 * *------------------------------------------------------------------------- */ herr_t H5O_unprotect(H5O_loc_t *loc, H5O_t *oh) { herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5O_unprotect, FAIL) /* check args */ HDassert(loc); HDassert(loc->file); HDassert(H5F_addr_defined(loc->addr)); HDassert(oh); /* Mark object header as evictable again */ if(H5AC_unpin_entry(loc->file, oh) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTUNPIN, FAIL, "unable to unpin object header") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_unprotect() */ /*------------------------------------------------------------------------- * Function: H5O_touch_oh * * Purpose: If FORCE is non-zero then create a modification time message * unless one already exists. Then update any existing * modification time message with the current time. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Monday, July 27, 1998 * *------------------------------------------------------------------------- */ herr_t H5O_touch_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh, hbool_t force) { time_t now; /* Current time */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5O_touch_oh) HDassert(f); HDassert(oh); /* Check if this object header is tracking times */ if(oh->flags & H5O_HDR_STORE_TIMES) { /* Get current time */ now = H5_now(); /* Check version, to determine how to store time information */ if(oh->version == H5O_VERSION_1) { unsigned idx; /* Index of modification time message to update */ /* Look for existing message */ for(idx = 0; idx < oh->nmesgs; idx++) if(H5O_MSG_MTIME == oh->mesg[idx].type || H5O_MSG_MTIME_NEW == oh->mesg[idx].type) break; /* Create a new message, if necessary */ if(idx == oh->nmesgs) { unsigned mesg_flags = 0; /* Flags for message in object header */ /* If we would have to create a new message, but we aren't 'forcing' it, get out now */ if(!force) HGOTO_DONE(SUCCEED); /*nothing to do*/ /* Allocate space for the modification time message */ if((idx = H5O_msg_alloc(f, dxpl_id, oh, H5O_MSG_MTIME_NEW, &mesg_flags, &now)) == UFAIL) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to allocate space for modification time message") /* Set the message's flags if appropriate */ oh->mesg[idx].flags = mesg_flags; } /* end if */ /* Allocate 'native' space, if necessary */ if(NULL == oh->mesg[idx].native) { if(NULL == (oh->mesg[idx].native = H5FL_MALLOC(time_t))) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "memory allocation failed for modification time message") } /* end if */ /* Update the message */ *((time_t *)(oh->mesg[idx].native)) = now; /* Mark the message as dirty */ oh->mesg[idx].dirty = TRUE; } /* end if */ else { /* XXX: For now, update access time & change fields in the object header */ /* (will need to add some code to update modification time appropriately) */ oh->atime = oh->ctime = now; } /* end else */ /* Mark object header as dirty in cache */ if(H5AC_mark_pinned_or_protected_entry_dirty(f, oh) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTMARKDIRTY, FAIL, "unable to mark object header as dirty") } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_touch_oh() */ /*------------------------------------------------------------------------- * Function: H5O_touch * * Purpose: Touch an object by setting the modification time to the * current time and marking the object as dirty. Unless FORCE * is non-zero, nothing happens if there is no MTIME message in * the object header. * * Return: Non-negative on success/Negative on failure * * Programmer: Robb Matzke * Monday, July 27, 1998 * *------------------------------------------------------------------------- */ herr_t H5O_touch(H5O_loc_t *loc, hbool_t force, hid_t dxpl_id) { H5O_t *oh = NULL; unsigned oh_flags = H5AC__NO_FLAGS_SET; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5O_touch, FAIL) /* check args */ HDassert(loc); HDassert(loc->file); HDassert(H5F_addr_defined(loc->addr)); if(0 == (H5F_INTENT(loc->file) & H5F_ACC_RDWR)) HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file") /* Get the object header */ if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header") /* Create/Update the modification time message */ if(H5O_touch_oh(loc->file, dxpl_id, oh, force) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to update object modificaton time") /* Mark object header as changed */ oh_flags |= H5AC__DIRTIED_FLAG; done: if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_touch() */ #ifdef H5O_ENABLE_BOGUS /*------------------------------------------------------------------------- * Function: H5O_bogus_oh * * Purpose: Create a "bogus" message unless one already exists. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * * Tuesday, January 21, 2003 * *------------------------------------------------------------------------- */ herr_t H5O_bogus_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh) { int idx; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER(H5O_bogus_oh, FAIL) HDassert(f); HDassert(oh); /* Look for existing message */ for(idx = 0; idx < oh->nmesgs; idx++) if(H5O_MSG_BOGUS == oh->mesg[idx].type) break; /* Create a new message */ if(idx == oh->nmesgs) { H5O_bogus_t *bogus; /* Pointer to the bogus information */ unsigned mesg_flags = 0; /* Flags for message in object header */ /* Allocate the native message in memory */ if(NULL == (bogus = H5MM_malloc(sizeof(H5O_bogus_t)))) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "memory allocation failed for 'bogus' message") /* Update the native value */ bogus->u = H5O_BOGUS_VALUE; /* Allocate space in the object header for bogus message */ if((idx = H5O_msg_alloc(f, dxpl_id, oh, H5O_MSG_BOGUS, &mesg_flags, bogus)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to allocate space for 'bogus' message") /* Point to "bogus" information (take it over) */ oh->mesg[idx].native = bogus; /* Mark the message and object header as dirty */ oh->mesg[idx].flags = mesg_flags; oh->mesg[idx].dirty = TRUE; oh->dirty = TRUE; } /* end if */ done: FUNC_LEAVE(ret_value) } /* end H5O_bogus_oh() */ /*------------------------------------------------------------------------- * Function: H5O_bogus * * Purpose: Create a "bogus" message in an object. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * * Tuesday, January 21, 2003 * *------------------------------------------------------------------------- */ herr_t H5O_bogus(H5O_loc_t *loc, hid_t dxpl_id) { H5O_t *oh = NULL; unsigned oh_flags = H5AC__NO_FLAGS_SET; herr_t ret_value = SUCCEED; FUNC_ENTER(H5O_bogus, FAIL) /* check args */ HDassert(loc); HDassert(loc->file); HDassert(H5F_addr_defined(loc->addr)); /* Verify write access to the file */ if(0 == (H5F_INTENT(loc->file) & H5F_ACC_RDWR)) HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file") /* Get the object header */ if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header") /* Create the "bogus" message */ if(H5O_bogus_oh(ent->file, dxpl_id, oh) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to update object 'bogus' message") /* Mark object header as changed */ oh_flags |= H5AC__DIRTIED_FLAG; done: if(oh && H5AC_unprotect(ent->file, dxpl_id, H5AC_OHDR, ent->header, oh, oh_flags) < 0) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header") FUNC_LEAVE(ret_value) } /* end H5O_bogus() */ #endif /* H5O_ENABLE_BOGUS */ /*------------------------------------------------------------------------- * Function: H5O_delete * * Purpose: Delete an object header from a file. This frees the file * space used for the object header (and it's continuation blocks) * and also walks through each header message and asks it to * remove all the pieces of the file referenced by the header. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Mar 19 2003 * *------------------------------------------------------------------------- */ herr_t H5O_delete(H5F_t *f, hid_t dxpl_id, haddr_t addr) { H5O_t *oh = NULL; /* Object header information */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5O_delete,FAIL) /* Check args */ HDassert(f); HDassert(H5F_addr_defined(addr)); /* Get the object header information */ if(NULL == (oh = H5AC_protect(f, dxpl_id, H5AC_OHDR, addr, NULL, NULL, H5AC_WRITE))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header") /* Delete object */ if(H5O_delete_oh(f, dxpl_id, oh) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't delete object from file") done: if(oh && H5AC_unprotect(f, dxpl_id, H5AC_OHDR, addr, oh, H5AC__DIRTIED_FLAG | H5C__DELETED_FLAG) < 0) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_delete() */ /*------------------------------------------------------------------------- * Function: H5O_delete_oh * * Purpose: Internal function to: * Delete an object header from a file. This frees the file * space used for the object header (and it's continuation blocks) * and also walks through each header message and asks it to * remove all the pieces of the file referenced by the header. * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Mar 19 2003 * *------------------------------------------------------------------------- */ static herr_t H5O_delete_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh) { H5O_mesg_t *curr_msg; /* Pointer to current message being operated on */ unsigned u; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5O_delete_oh) /* Check args */ HDassert(f); HDassert(oh); /* Walk through the list of object header messages, asking each one to * delete any file space used */ for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) { /* Free any space referred to in the file from this message */ if(H5O_delete_mesg(f, dxpl_id, curr_msg) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to delete file space for object header message") } /* end for */ /* Free main (first) object header "chunk" */ if(H5MF_xfree(f, H5FD_MEM_OHDR, dxpl_id, oh->chunk[0].addr, (hsize_t)oh->chunk[0].size) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to free object header") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_delete_oh() */ /*------------------------------------------------------------------------- * Function: H5O_obj_type * * Purpose: Retrieves the type of object pointed to by `loc'. * * Return: Success: An object type defined in H5Gpublic.h * Failure: H5G_UNKNOWN * * Programmer: Robb Matzke * Wednesday, November 4, 1998 * *------------------------------------------------------------------------- */ herr_t H5O_obj_type(const H5O_loc_t *loc, H5O_type_t *obj_type, hid_t dxpl_id) { H5O_t *oh = NULL; /* Object header for location */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5O_obj_type, FAIL) /* Load the object header */ if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header") /* Retrieve the type of the object */ if(H5O_obj_type_real(oh, obj_type) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to determine object type") done: if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) != SUCCEED) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_obj_type() */ /*------------------------------------------------------------------------- * Function: H5O_obj_type_real * * Purpose: Returns the type of object pointed to by `oh'. * * Return: Success: An object type defined in H5Opublic.h * Failure: H5G_UNKNOWN * * Programmer: Quincey Koziol * Monday, November 21, 2005 * *------------------------------------------------------------------------- */ static herr_t H5O_obj_type_real(H5O_t *oh, H5O_type_t *obj_type) { const H5O_obj_class_t *obj_class; /* Class of object for header */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5O_obj_type_real) /* Sanity check */ HDassert(oh); HDassert(obj_type); /* Look up class for object header */ if(NULL == (obj_class = H5O_obj_class_real(oh))) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine object type") /* Set object type */ *obj_type = obj_class->type; done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_obj_type_real() */ /*------------------------------------------------------------------------- * Function: H5O_obj_class * * Purpose: Returns the class of object pointed to by `loc'. * * Return: Success: An object class * Failure: NULL * * Programmer: Quincey Koziol * Monday, November 6, 2006 * *------------------------------------------------------------------------- */ static const H5O_obj_class_t * H5O_obj_class(const H5O_loc_t *loc, hid_t dxpl_id) { H5O_t *oh = NULL; /* Object header for location */ const H5O_obj_class_t *ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5O_obj_class) /* Load the object header */ if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "unable to load object header") /* Test whether entry qualifies as a particular type of object */ if(NULL == (ret_value = H5O_obj_class_real(oh))) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type") done: if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) != SUCCEED) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, NULL, "unable to release object header") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_obj_class() */ /*------------------------------------------------------------------------- * Function: H5O_obj_class_real * * Purpose: Returns the class of object pointed to by `oh'. * * Return: Success: An object class * Failure: NULL * * Programmer: Quincey Koziol * Monday, November 21, 2005 * *------------------------------------------------------------------------- */ const H5O_obj_class_t * H5O_obj_class_real(H5O_t *oh) { size_t i; /* Local index variable */ const H5O_obj_class_t *ret_value; /* Return value */ FUNC_ENTER_NOAPI(H5O_obj_class_real, NULL) /* Sanity check */ HDassert(oh); /* Test whether entry qualifies as a particular type of object */ /* (Note: loop is in reverse order, to test specific objects first) */ for(i = NELMTS(H5O_obj_class_g); i > 0; --i) { htri_t isa; /* Is entry a particular type? */ if((isa = (H5O_obj_class_g[i - 1]->isa)(oh)) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type") else if(isa) HGOTO_DONE(H5O_obj_class_g[i - 1]) } /* end for */ if(0 == i) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_obj_class_real() */ /*------------------------------------------------------------------------- * Function: H5O_get_loc * * Purpose: Gets the object location for an object given its ID. * * Return: Success: Pointer to H5O_loc_t * Failure: NULL * * Programmer: James Laird * July 25 2006 * *------------------------------------------------------------------------- */ H5O_loc_t * H5O_get_loc(hid_t object_id) { H5O_loc_t *ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT(H5O_get_loc) switch(H5I_get_type(object_id)) { case(H5I_GROUP): if(NULL == (ret_value = H5O_OBJ_GROUP->get_oloc(object_id))) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from group ID") break; case(H5I_DATASET): if(NULL == (ret_value = H5O_OBJ_DATASET->get_oloc(object_id))) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from dataset ID") break; case(H5I_DATATYPE): if(NULL == (ret_value = H5O_OBJ_DATATYPE->get_oloc(object_id))) HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from datatype ID") break; default: HGOTO_ERROR(H5E_OHDR, H5E_BADTYPE, NULL, "invalid object type") } /* end switch */ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_get_loc() */ /*------------------------------------------------------------------------- * Function: H5O_loc_reset * * Purpose: Reset a object location to an empty state * * Return: Success: Non-negative * Failure: Negative * * Programmer: Quincey Koziol * Monday, September 19, 2005 * *------------------------------------------------------------------------- */ herr_t H5O_loc_reset(H5O_loc_t *loc) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_reset) /* Check arguments */ HDassert(loc); /* Clear the object location to an empty state */ HDmemset(loc, 0, sizeof(H5O_loc_t)); loc->addr = HADDR_UNDEF; FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O_loc_reset() */ /*------------------------------------------------------------------------- * Function: H5O_loc_copy * * Purpose: Copy object location information * * Return: Success: Non-negative * Failure: Negative * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu * Monday, September 19, 2005 * * Notes: 'depth' parameter determines how much of the group entry * structure we want to copy. The values are: * H5_COPY_SHALLOW - Copy all the field values from the source * to the destination, but not copying objects pointed to. * (Destination "takes ownership" of objects pointed to) * H5_COPY_DEEP - Copy all the fields from the source to * the destination, deep copying objects pointed to. * *------------------------------------------------------------------------- */ herr_t H5O_loc_copy(H5O_loc_t *dst, const H5O_loc_t *src, H5_copy_depth_t depth) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_copy) /* Check arguments */ HDassert(src); HDassert(dst); HDassert(depth == H5_COPY_SHALLOW || depth == H5_COPY_DEEP); /* Copy the top level information */ HDmemcpy(dst, src, sizeof(H5O_loc_t)); /* Deep copy the names */ if(depth == H5_COPY_DEEP) { /* If the original entry was holding open the file, this one should * hold it open, too. */ if(src->holding_file) dst->file->nopen_objs++; } else if(depth == H5_COPY_SHALLOW) { /* Discarding 'const' qualifier OK - QAK */ H5O_loc_reset((H5O_loc_t *)src); } /* end if */ FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O_loc_copy() */ /*------------------------------------------------------------------------- * Function: H5O_loc_hold_file * * Purpose: Have this object header hold a file open until it is * released. * * Return: Success: Non-negative * Failure: Negative * * Programmer: James Laird * Wednesday, August 16, 2006 * *------------------------------------------------------------------------- */ herr_t H5O_loc_hold_file(H5O_loc_t *loc) { FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_hold_file) /* Check arguments */ HDassert(loc); HDassert(loc->file); /* If this location is not already holding its file open, do so. */ if(!loc->holding_file) { loc->file->nopen_objs++; loc->holding_file = TRUE; } FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O_loc_hold_file() */ /*------------------------------------------------------------------------- * Function: H5O_loc_free * * Purpose: Release resources used by this object header location. * Not to be confused with H5O_close; this is used on * locations that don't correspond to open objects. * * Return: Success: Non-negative * Failure: Negative * * Programmer: James Laird * Wednesday, August 16, 2006 * *------------------------------------------------------------------------- */ herr_t H5O_loc_free(H5O_loc_t *loc) { herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT(H5O_loc_free) /* Check arguments */ HDassert(loc); /* If this location is holding its file open try to close the file. */ if(loc->holding_file) { loc->file->nopen_objs--; loc->holding_file = FALSE; if(loc->file->nopen_objs <= 0) { if(H5F_try_close(loc->file) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close file") } /* end if */ } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_loc_free() */ /*------------------------------------------------------------------------- * Function: H5O_get_info * * Purpose: Retrieve the information for an object * * Return: Success: Non-negative * Failure: Negative * * Programmer: Quincey Koziol * November 21 2006 * *------------------------------------------------------------------------- */ herr_t H5O_get_info(H5O_loc_t *oloc, H5O_info_t *oinfo, hid_t dxpl_id) { H5O_t *oh = NULL; /* Object header */ H5O_chunk_t *curr_chunk; /* Pointer to current message being operated on */ H5O_mesg_t *curr_msg; /* Pointer to current message being operated on */ unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5O_get_info, FAIL) /* Check args */ HDassert(oloc); HDassert(oinfo); /* Get the object header */ if(NULL == (oh = H5AC_protect(oloc->file, dxpl_id, H5AC_OHDR, oloc->addr, NULL, NULL, H5AC_READ))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header") /* Retrieve the file's fileno */ if(H5F_get_fileno(oloc->file, &oinfo->fileno) < 0) HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, FAIL, "unable to read fileno") /* Set the object's address */ oinfo->addr = oloc->addr; /* Retrieve the type of the object */ if(H5O_obj_type_real(oh, &oinfo->type) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to determine object type") /* Set the object's reference count */ oinfo->rc = oh->nlink; /* Get modification time for object */ if(oh->version > H5O_VERSION_1) { oinfo->atime = oh->atime; oinfo->mtime = oh->mtime; oinfo->ctime = oh->ctime; oinfo->btime = oh->btime; } /* end if */ else { /* No information for access & modification fields */ /* (we stopped updating the "modification time" header message for * raw data changes, so the "modification time" header message * is closest to the 'change time', in POSIX terms - QAK) */ oinfo->atime = 0; oinfo->mtime = 0; oinfo->btime = 0; /* Might be information for modification time */ if(NULL == H5O_msg_read_real(oloc->file, dxpl_id, oh, H5O_MTIME_ID, &oinfo->ctime)) { H5E_clear_stack(NULL); if(NULL == H5O_msg_read_real(oloc->file, dxpl_id, oh, H5O_MTIME_NEW_ID, &oinfo->ctime)) { H5E_clear_stack(NULL); oinfo->ctime = 0; } /* end if */ } /* end if */ } /* end else */ /* Set the version for the object header */ oinfo->hdr.version = oh->version; /* Set the number of messages & chunks */ oinfo->hdr.nmesgs = oh->nmesgs; oinfo->hdr.nchunks = oh->nchunks; /* Set the status flags */ oinfo->hdr.flags = oh->flags; /* Iterate over all the messages, accumulating message size & type information */ oinfo->hdr.space.meta = H5O_SIZEOF_HDR(oh) + (H5O_SIZEOF_CHKHDR_OH(oh) * (oh->nchunks - 1)); oinfo->hdr.space.mesg = 0; oinfo->hdr.space.free = 0; oinfo->hdr.mesg.present = 0; oinfo->hdr.mesg.shared = 0; for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) { uint64_t type_flag; /* Flag for message type */ /* Accumulate space usage information, based on the type of message */ if(H5O_NULL_ID == curr_msg->type->id) oinfo->hdr.space.free += H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg->raw_size; else if(H5O_CONT_ID == curr_msg->type->id) oinfo->hdr.space.meta += H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg->raw_size; else { oinfo->hdr.space.meta += H5O_SIZEOF_MSGHDR_OH(oh); oinfo->hdr.space.mesg += curr_msg->raw_size; } /* end else */ /* Set flag to indicate presence of message type */ type_flag = ((uint64_t)1) << curr_msg->type->id; oinfo->hdr.mesg.present |= type_flag; /* Set flag if the message is shared in some way */ if(curr_msg->flags & H5O_MSG_FLAG_SHARED) \ oinfo->hdr.mesg.shared |= type_flag; } /* end for */ /* Retrieve # of attributes */ oinfo->num_attrs = H5O_attr_count_real(oloc->file, dxpl_id, oh); /* Iterate over all the chunks, adding any gaps to the free space */ oinfo->hdr.space.total = 0; for(u = 0, curr_chunk = &oh->chunk[0]; u < oh->nchunks; u++, curr_chunk++) { /* Accumulate the size of the header on header */ oinfo->hdr.space.total += curr_chunk->size; /* If the chunk has a gap, add it to the free space */ oinfo->hdr.space.free += curr_chunk->gap; } /* end for */ /* Sanity check that all the bytes are accounted for */ HDassert(oinfo->hdr.space.total == (oinfo->hdr.space.free + oinfo->hdr.space.meta + oinfo->hdr.space.mesg + oh->skipped_mesg_size)); done: if(oh && H5AC_unprotect(oloc->file, dxpl_id, H5AC_OHDR, oloc->addr, oh, H5AC__NO_FLAGS_SET) < 0) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_get_info() */ /*------------------------------------------------------------------------- * Function: H5O_get_create_plist * * Purpose: Retrieve the object creation properties for an object * * Return: Success: Non-negative * Failure: Negative * * Programmer: Quincey Koziol * November 28 2006 * *------------------------------------------------------------------------- */ herr_t H5O_get_create_plist(const H5O_loc_t *oloc, hid_t dxpl_id, H5P_genplist_t *oc_plist) { H5O_t *oh = NULL; /* Object header */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(H5O_get_create_plist, FAIL) /* Check args */ HDassert(oloc); HDassert(oc_plist); /* Get the object header */ if(NULL == (oh = H5AC_protect(oloc->file, dxpl_id, H5AC_OHDR, oloc->addr, NULL, NULL, H5AC_READ))) HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header") /* Set property values, if they were used for the object */ if(oh->version > H5O_VERSION_1) { /* Set attribute storage values */ if(H5P_set(oc_plist, H5O_CRT_ATTR_MAX_COMPACT_NAME, &oh->max_compact) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set max. # of compact attributes in property list") if(H5P_set(oc_plist, H5O_CRT_ATTR_MIN_DENSE_NAME, &oh->min_dense) < 0) HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set min. # of dense attributes in property list") /* Set object header flags */ if(H5P_set(oc_plist, H5O_CRT_OHDR_FLAGS_NAME, &oh->flags) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set object header flags") } /* end if */ done: if(oh && H5AC_unprotect(oloc->file, dxpl_id, H5AC_OHDR, oloc->addr, oh, H5AC__NO_FLAGS_SET) < 0) HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_get_create_plist() */