/* * Copyright (C) 1998 NCSA * All rights reserved. * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Purpose: Simple data space functions. */ #include #include #include /* Interface initialization */ #define PABLO_MASK H5P_simp_mask #define INTERFACE_INIT NULL static intn interface_initialize_g = FALSE; /*------------------------------------------------------------------------- * Function: H5P_simp_init * * Purpose: Generates element numbering information for the data * spaces involved in a data space conversion. * * Return: Success: Number of elements that can be efficiently * transferred at a time. * * Failure: Zero * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ size_t H5P_simp_init (const struct H5O_layout_t *layout, const H5P_t *mem_space, const H5P_t *file_space, H5P_number_t *numbering/*out*/) { size_t nelmts; FUNC_ENTER (H5P_simp_init, 0); /* Check args */ assert (layout); assert (mem_space && H5P_SIMPLE==mem_space->type); assert (file_space && H5P_SIMPLE==file_space->type); assert (numbering); /* Numbering is implied by the hyperslab, C order */ HDmemset (numbering, 0, sizeof(H5P_number_t)); /* Data can be efficiently copied at any size */ nelmts = H5P_get_npoints (file_space); FUNC_LEAVE (nelmts); } /*------------------------------------------------------------------------- * Function: H5P_simp_fgath * * Purpose: Gathers data points from file F and accumulates them in the * type conversion buffer BUF. The LAYOUT argument describes * how the data is stored on disk. ELMT_SIZE is the size in * bytes of a datum which this function treats as opaque. * FILE_SPACE describes the data space of the dataset on disk * and the elements that have been selected for reading (via * hyperslab, etc) and NUMBERING describes how those elements * are numbered (initialized by the H5P_*_init() call). This * function will copy at most NELMTS elements beginning at the * element numbered START. * * Return: Success: Number of elements copied. * * Failure: 0 * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ size_t H5P_simp_fgath (H5F_t *f, const struct H5O_layout_t *layout, size_t elmt_size, const H5P_t *file_space, const H5P_number_t *numbering, intn start, intn nelmts, void *buf/*out*/) { size_t offset[H5O_LAYOUT_NDIMS]; /*offset of hyperslab */ size_t size[H5O_LAYOUT_NDIMS]; /*size of hyperslab */ intn i; /*counters */ FUNC_ENTER (H5P_simp_fgath, 0); /* Check args */ assert (f); assert (layout); assert (elmt_size>0); assert (file_space); assert (numbering); assert (nelmts>0); assert (buf); /* * The prototype doesn't support strip mining. */ assert (0==start); assert (nelmts==H5P_get_npoints (file_space)); /* * Quincey, this is where we look at FILE_SPACE to decide what the * hyperslab is to read from disk. For now, since the H5P interface * doesn't support hyperslabs, we'll assume the caller is asking for the * entire array. --RPM */ assert (nelmts == H5P_get_npoints (file_space)); for (i=0; indims; i++) offset[i] = 0; i = H5P_get_dims (file_space, size); assert (i+1 == layout->ndims); size[i] = elmt_size; /* * Gather from file. */ if (H5F_arr_read (f, layout, size, size, offset, offset, buf/*out*/)<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_READERROR, 0, "read error"); } FUNC_LEAVE (nelmts); } /*------------------------------------------------------------------------- * Function: H5P_simp_mscat * * Purpose: Scatters data points from the type conversion buffer * TCONV_BUF to the application buffer BUF. Each element is * ELMT_SIZE bytes and they are organized in application memory * according to MEM_SPACE. The NUMBERING information together * with START and NELMTS describe how the elements stored in * TCONV_BUF are globally numbered. * * Return: Success: SUCCEED * * Failure: FAIL * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5P_simp_mscat (const void *tconv_buf, size_t elmt_size, const H5P_t *mem_space, const H5P_number_t *numbering, intn start, intn nelmts, void *buf/*out*/) { FUNC_ENTER (H5P_simp_mscat, FAIL); /* Check args */ assert (tconv_buf); assert (elmt_size>0); assert (mem_space && H5P_SIMPLE==mem_space->type); assert (numbering); assert (nelmts>0); assert (buf); /* * The prototype doesn't support strip mining. */ assert (0==start); assert (nelmts==H5P_get_npoints (mem_space)); /* * Quincey, this is where we look at the hyperslab spec of MEM_SPACE to * figure out how to scatter. You'll probably end up calling * H5V_hyper_copy(), but for now we just assume that data points * are copied directly from TCONV_BUF to BUF. */ HDmemcpy (buf, tconv_buf, nelmts*elmt_size); FUNC_LEAVE (SUCCEED); } /*------------------------------------------------------------------------- * Function: H5P_simp_mgath * * Purpose: Gathers dataset elements from application memory BUF and * copies them into the data type conversion buffer TCONV_BUF. * Each element is ELMT_SIZE bytes and arranged in application * memory according to MEM_SPACE. The elements selected from * BUF by MEM_SPACE are numbered according to NUMBERING and the * caller is requesting that at most NELMTS be gathered * beginning with number START. The elements are packed into * TCONV_BUF in order of their NUMBERING. * * Return: Success: Number of elements copied. * * Failure: 0 * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ size_t H5P_simp_mgath (const void *buf, size_t elmt_size, const H5P_t *mem_space, const H5P_number_t *numbering, intn start, intn nelmts, void *tconv_buf/*out*/) { FUNC_ENTER (H5P_simp_mgath, 0); /* Check args */ assert (buf); assert (elmt_size>0); assert (mem_space && H5P_SIMPLE==mem_space->type); assert (numbering); assert (nelmts>0); assert (tconv_buf); /* * The prototype doesn't support strip mining. */ assert (0==start); assert (nelmts==H5P_get_npoints (mem_space)); /* * Quincey, this is where we look at the hyperslab spec of MEM_SPACE to * figure out how to gather. You'll probably end up calling * H5V_hyper_copy(), but for now we just assume that data points are * copied directly from BUF to TCONV_BUF. */ HDmemcpy (tconv_buf, buf, nelmts*elmt_size); FUNC_LEAVE (nelmts); } /*------------------------------------------------------------------------- * Function: H5P_simp_fscat * * Purpose: Scatters dataset elements from the type conversion buffer BUF * to the file F where the data points are arranged according to * the file data space FILE_SPACE and stored according to * LAYOUT. Each element is ELMT_SIZE bytes and has a unique * number according to NUMBERING. The caller is requesting that * NELMTS elements are coppied beginning with element number * START. * * Return: Success: SUCCEED * * Failure: FAIL * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5P_simp_fscat (H5F_t *f, const struct H5O_layout_t *layout, size_t elmt_size, const H5P_t *file_space, const H5P_number_t *numbering, intn start, intn nelmts, const void *buf) { size_t offset[H5O_LAYOUT_NDIMS]; /*offset of hyperslab */ size_t size[H5O_LAYOUT_NDIMS]; /*size of hyperslab */ intn i; /*counters */ FUNC_ENTER (H5P_simp_fscat, FAIL); /* Check args */ assert (f); assert (layout); assert (elmt_size>0); assert (file_space); assert (numbering); assert (nelmts>0); assert (buf); /* * The prototype doesn't support strip mining. */ assert (0==start); assert (nelmts==H5P_get_npoints (file_space)); /* * Quincey, this is where we look at FILE_SPACE to decide what the * hyperslab is to read from disk. For now, since the H5P interface * doesn't support hyperslabs, we'll assume the caller is asking for the * entire array. --RPM */ assert (nelmts == H5P_get_npoints (file_space)); for (i=0; indims; i++) offset[i] = 0; i = H5P_get_dims (file_space, size); assert (i+1 == layout->ndims); size[i] = elmt_size; /* * Scatter to file. */ if (H5F_arr_write (f, layout, size, size, offset, offset, buf/*out*/)<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_WRITEERROR, 0, "write error"); } FUNC_LEAVE (SUCCEED); }