/* * Copyright (C) 1998 NCSA * All rights reserved. * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Purpose: Simple data space functions. */ #include #include #include #include /* Interface initialization */ #define PABLO_MASK H5P_simp_mask #define INTERFACE_INIT NULL static intn interface_initialize_g = FALSE; /*------------------------------------------------------------------------- * Function: H5P_simp_init * * Purpose: Generates element numbering information for the data * spaces involved in a data space conversion. * * Return: Success: Number of elements that can be efficiently * transferred at a time. * * Failure: Zero * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ size_t H5P_simp_init (const struct H5O_layout_t *layout, const H5P_t *mem_space, const H5P_t *file_space, H5P_number_t *numbering/*out*/) { size_t nelmts; FUNC_ENTER (H5P_simp_init, 0); /* Check args */ assert (layout); assert (mem_space && H5P_SIMPLE==mem_space->type); assert (file_space && H5P_SIMPLE==file_space->type); assert (numbering); /* Numbering is implied by the hyperslab, C order */ HDmemset (numbering, 0, sizeof(H5P_number_t)); /* Data can be efficiently copied at any size */ nelmts = H5P_get_npoints (file_space); FUNC_LEAVE (nelmts); } /*------------------------------------------------------------------------- * Function: H5P_simp_fgath * * Purpose: Gathers data points from file F and accumulates them in the * type conversion buffer BUF. The LAYOUT argument describes * how the data is stored on disk. ELMT_SIZE is the size in * bytes of a datum which this function treats as opaque. * FILE_SPACE describes the data space of the dataset on disk * and the elements that have been selected for reading (via * hyperslab, etc) and NUMBERING describes how those elements * are numbered (initialized by the H5P_*_init() call). This * function will copy at most NELMTS elements beginning at the * element numbered START. * * Return: Success: Number of elements copied. * * Failure: 0 * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ size_t H5P_simp_fgath (H5F_t *f, const struct H5O_layout_t *layout, size_t elmt_size, const H5P_t *file_space, const H5P_number_t *numbering, size_t start, size_t nelmts, void *buf/*out*/) { size_t file_offset[H5O_LAYOUT_NDIMS]; /*offset of slab in file*/ size_t hsize[H5O_LAYOUT_NDIMS]; /*size of hyperslab */ size_t zero[H5O_LAYOUT_NDIMS]; /*zero */ size_t sample[H5O_LAYOUT_NDIMS]; /*hyperslab sampling */ #ifndef LATER intn file_offset_signed[H5O_LAYOUT_NDIMS]; #endif intn space_ndims; /*dimensionality of space*/ intn i; /*counters */ FUNC_ENTER (H5P_simp_fgath, 0); /* Check args */ assert (f); assert (layout); assert (elmt_size>0); assert (file_space); assert (numbering); assert (nelmts>0); assert (buf); /* * The prototype doesn't support strip mining. */ assert (0==start); assert (nelmts==H5P_get_npoints (file_space)); /* * Get hyperslab information to determine what elements are being * selected (there might eventually be other selection methods too). * We only support hyperslabs with unit sample because there's no way to * currently pass sample information into H5F_arr_read() much less * H5F_istore_read(). */ #ifdef LATER if ((space_ndims=H5P_get_hyperslab (file_space, file_offset, hsize, sample))<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_CANTINIT, 0, "unable to retrieve hyperslab parameters"); } #else if ((space_ndims=H5P_get_hyperslab (file_space, file_offset_signed, hsize, sample))<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_CANTINIT, 0, "unable to retrieve hyperslab parameters"); } for (i=0; i=0); file_offset[i] = file_offset_signed[i]; } #endif for (i=0; indims*sizeof(size_t)); /* * Gather from file. */ if (H5F_arr_read (f, layout, hsize, hsize, zero, file_offset, buf/*out*/)<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_READERROR, 0, "read error"); } FUNC_LEAVE (nelmts); } /*------------------------------------------------------------------------- * Function: H5P_simp_mscat * * Purpose: Scatters data points from the type conversion buffer * TCONV_BUF to the application buffer BUF. Each element is * ELMT_SIZE bytes and they are organized in application memory * according to MEM_SPACE. The NUMBERING information together * with START and NELMTS describe how the elements stored in * TCONV_BUF are globally numbered. * * Return: Success: SUCCEED * * Failure: FAIL * * Programmer: Robb Matzke * Wednesday, January 21, 1998 * * Modifications: * *------------------------------------------------------------------------- */ herr_t H5P_simp_mscat (const void *tconv_buf, size_t elmt_size, const H5P_t *mem_space, const H5P_number_t *numbering, size_t start, size_t nelmts, void *buf/*out*/) { size_t mem_offset[H5O_LAYOUT_NDIMS]; /*slab offset in app buf*/ size_t mem_size[H5O_LAYOUT_NDIMS]; /*total size of app buf */ size_t hsize[H5O_LAYOUT_NDIMS]; /*size of hyperslab */ size_t zero[H5O_LAYOUT_NDIMS]; /*zero */ size_t sample[H5O_LAYOUT_NDIMS]; /*hyperslab sampling */ #ifndef LATER intn mem_offset_signed[H5O_LAYOUT_NDIMS]; #endif intn space_ndims; /*dimensionality of space*/ intn i; /*counters */ FUNC_ENTER (H5P_simp_mscat, FAIL); /* Check args */ assert (tconv_buf); assert (elmt_size>0); assert (mem_space && H5P_SIMPLE==mem_space->type); assert (numbering); assert (nelmts>0); assert (buf); /* * The prototype doesn't support strip mining. */ assert (0==start); assert (nelmts==H5P_get_npoints (mem_space)); /* * Retrieve hyperslab information to determine what elements are being * selected (there might be other selection methods in the future). We * only handle hyperslabs with unit sample because there's currently no * way to pass sample information to H5V_hyper_copy(). */ #ifdef LATER if ((space_ndims=H5P_get_hyperslab (mem_space, mem_offset, hsize, sample))<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to retrieve hyperslab parameters"); } #else if ((space_ndims=H5P_get_hyperslab (mem_space, mem_offset_signed, hsize, sample))<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to retrieve hyperslab parameters"); } for (i=0; i=0); mem_offset[i] = mem_offset_signed[i]; } #endif for (i=0; i0); assert (mem_space && H5P_SIMPLE==mem_space->type); assert (numbering); assert (nelmts>0); assert (tconv_buf); /* * The prototype doesn't support strip mining. */ assert (0==start); assert (nelmts==H5P_get_npoints (mem_space)); /* * Retrieve hyperslab information to determine what elements are being * selected (there might be other selection methods in the future). We * only handle hyperslabs with unit sample because there's currently no * way to pass sample information to H5V_hyper_copy(). */ #ifdef LATER if ((space_ndims=H5P_get_hyperslab (mem_space, mem_offset, hsize, sample))<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_CANTINIT, 0, "unable to retrieve hyperslab parameters"); } #else if ((space_ndims=H5P_get_hyperslab (mem_space, mem_offset_signed, hsize, sample))<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to retrieve hyperslab parameters"); } for (i=0; i=0); mem_offset[i] = mem_offset_signed[i]; } #endif for (i=0; i0); assert (file_space); assert (numbering); assert (nelmts>0); assert (buf); /* * The prototype doesn't support strip mining. */ assert (0==start); assert (nelmts==H5P_get_npoints (file_space)); /* * Get hyperslab information to determine what elements are being * selected (there might eventually be other selection methods too). * We only support hyperslabs with unit sample because there's no way to * currently pass sample information into H5F_arr_read() much less * H5F_istore_read(). */ #ifdef LATER if ((space_ndims=H5P_get_hyperslab (file_space, file_offset, hsize, sample))<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to retrieve hyperslab parameters"); } #else if ((space_ndims=H5P_get_hyperslab (file_space, file_offset_signed, hsize, sample))<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to retrieve hyperslab parameters"); } for (i=0; i=0); file_offset[i] = file_offset_signed[i]; } #endif for (i=0; indims*sizeof(size_t)); /* * Scatter to file. */ if (H5F_arr_write (f, layout, hsize, hsize, zero, file_offset, buf)<0) { HRETURN_ERROR (H5E_DATASPACE, H5E_WRITEERROR, FAIL, "write error"); } FUNC_LEAVE (SUCCEED); }