/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * This file contains private information about the H5S module */ #ifndef _H5Sprivate_H #define _H5Sprivate_H #include "H5Spublic.h" /* Private headers needed by this file */ #include "H5private.h" #include "H5Dpublic.h" #include "H5Fprivate.h" #include "H5Oprivate.h" #define H5S_RESERVED_ATOMS 2 /* Flags to indicate special dataspace features are active */ #define H5S_VALID_MAX 0x01 #define H5S_VALID_PERM 0x02 /* Forward references of common typedefs */ typedef struct H5S_t H5S_t; typedef struct H5S_pnt_node_t H5S_pnt_node_t; /* Enumerated type for the type of selection */ typedef enum { H5S_SEL_ERROR = -1, /* Error */ H5S_SEL_NONE = 0, /* Nothing selected */ H5S_SEL_POINTS = 1, /* Sequence of points selected */ H5S_SEL_HYPERSLABS = 2, /* Hyperslab selection defined */ H5S_SEL_ALL = 3, /* Entire extent selected */ H5S_SEL_N = 4 /*THIS MUST BE LAST */ }H5S_sel_type; /* Point selection iteration container */ typedef struct { hsize_t elmt_left; /* Number of elements left to iterate over */ H5S_pnt_node_t *curr; /* Pointer to next node to output */ } H5S_point_iter_t; /* Hyperslab selection iteration container */ typedef struct { hsize_t elmt_left; /* Number of elements left to iterate over */ hssize_t *pos; /* Position to start iterating at */ } H5S_hyper_iter_t; /* "All" selection iteration container */ typedef struct { hsize_t elmt_left; /* Number of elements left to iterate over */ hsize_t offset; /* Next element to output */ } H5S_all_iter_t; /* Selection iteration container */ typedef union { H5S_point_iter_t pnt; /* Point selection iteration information */ H5S_hyper_iter_t hyp; /* Hyperslab selection iteration information */ H5S_all_iter_t all; /* "All" selection iteration information */ } H5S_sel_iter_t; /* * Data space conversions usually take place in two halves. One half * transfers data points between memory and a data type conversion array * where the points are contiguous, and the other half transfers points * between the type conversion array and the file. */ typedef struct H5S_fconv_t { /* Identification */ const char *name; H5S_sel_type type; /* Initialize file element numbering information */ herr_t (*init)(const struct H5O_layout_t *layout, const H5S_t *space, H5S_sel_iter_t *iter); /* Determine optimal number of elements to transfer */ hsize_t (*avail)(const H5S_t *file_space, const H5S_sel_iter_t *file_iter, hsize_t max); /* Gather elements from disk to type conversion buffer */ hsize_t (*gath)(H5F_t *f, const struct H5O_layout_t *layout, const struct H5O_pline_t *pline, const struct H5O_fill_t *fill, const struct H5O_efl_t *efl, size_t elmt_size, const H5S_t *file_space, H5S_sel_iter_t *file_iter, hsize_t nelmts, hid_t dxpl_id, void *tconv_buf/*out*/); /* Scatter elements from type conversion buffer to disk */ herr_t (*scat)(H5F_t *f, const struct H5O_layout_t *layout, const struct H5O_pline_t *pline, const struct H5O_fill_t *fill, const struct H5O_efl_t *efl, size_t elmt_size, const H5S_t *file_space, H5S_sel_iter_t *file_iter, hsize_t nelmts, hid_t dxpl_id, const void *tconv_buf); } H5S_fconv_t; typedef struct H5S_mconv_t { /* Identification */ const char *name; H5S_sel_type type; /* Initialize memory element numbering information */ herr_t (*init)(const struct H5O_layout_t *layout, const H5S_t *space, H5S_sel_iter_t *iter); /* Gather elements from app buffer to type conversion buffer */ hsize_t (*gath)(const void *buf, size_t elmt_size, const H5S_t *mem_space, H5S_sel_iter_t *mem_iter, hsize_t nelmts, void *tconv_buf/*out*/); /* Scatter elements from type conversion buffer to application buffer */ herr_t (*scat)(const void *tconv_buf, size_t elmt_size, const H5S_t *mem_space, H5S_sel_iter_t *mem_iter, hsize_t nelmts, void *buf/*out*/); } H5S_mconv_t; typedef struct H5S_conv_t { const H5S_fconv_t *f; const H5S_mconv_t *m; /* * If there is no data type conversion then it might be possible to * transfer data points between application memory and the file in one * step without going through the data type conversion buffer. * * rky 980918 * If the direct read or write function determines that the transfer * must be done indirectly, i.e., through the conversion buffer or * (in the case of parallel MPI-IO) in block-by-block transfers * then the function returns with the value of must_convert!=0, * the function's return value is SUCCEED, * and no transfer of data is attempted. * Otherwise the direct read or write function returns must_convert 0, * with the function's return value being SUCCEED or FAIL * depending on whether or not the transfer of data was successful. */ /* Read from file to application w/o intermediate scratch buffer */ herr_t (*read)(H5F_t *f, const struct H5O_layout_t *layout, const struct H5O_pline_t *pline, const struct H5O_fill_t *fill, const struct H5O_efl_t *efl, size_t elmt_size, const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id, void *buf/*out*/, hbool_t *must_convert/*out*/); /* Write directly from app buffer to file */ herr_t (*write)(H5F_t *f, const struct H5O_layout_t *layout, const struct H5O_pline_t *pline, const struct H5O_fill_t *fill, const struct H5O_efl_t *efl, size_t elmt_size, const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id, const void *buf, hbool_t *must_convert/*out*/); #ifdef H5S_DEBUG struct { H5_timer_t scat_timer; /*time spent scattering */ hsize_t scat_nbytes; /*scatter throughput */ hsize_t scat_ncalls; /*number of calls */ H5_timer_t gath_timer; /*time spent gathering */ hsize_t gath_nbytes; /*gather throughput */ hsize_t gath_ncalls; /*number of calls */ H5_timer_t bkg_timer; /*time for background */ hsize_t bkg_nbytes; /*background throughput */ hsize_t bkg_ncalls; /*number of calls */ H5_timer_t read_timer; /*time for read calls */ hsize_t read_nbytes; /*total bytes read */ hsize_t read_ncalls; /*number of calls */ H5_timer_t write_timer; /*time for write calls */ hsize_t write_nbytes; /*total bytes written */ hsize_t write_ncalls; /*number of calls */ } stats[2]; /* 0=output, 1=input */ #endif } H5S_conv_t; /* Conversion information for the various data space selection types */ __DLLVAR__ const H5S_fconv_t H5S_POINT_FCONV[]; __DLLVAR__ const H5S_mconv_t H5S_POINT_MCONV[]; __DLLVAR__ const H5S_fconv_t H5S_ALL_FCONV[]; __DLLVAR__ const H5S_mconv_t H5S_ALL_MCONV[]; __DLLVAR__ const H5S_fconv_t H5S_HYPER_FCONV[]; __DLLVAR__ const H5S_mconv_t H5S_HYPER_MCONV[]; /* We get the declaration of H5G_entry_t from the H5Oprivate.h file */ __DLL__ H5S_t *H5S_create(H5S_class_t type); __DLL__ H5S_t *H5S_copy(const H5S_t *src); __DLL__ herr_t H5S_close(H5S_t *ds); __DLL__ H5S_conv_t *H5S_find(const H5S_t *mem_space, const H5S_t *file_space); __DLL__ H5S_class_t H5S_get_simple_extent_type(const H5S_t *ds); __DLL__ hssize_t H5S_get_simple_extent_npoints(const H5S_t *ds); __DLL__ hsize_t H5S_get_npoints_max(const H5S_t *ds); __DLL__ int H5S_get_simple_extent_ndims(const H5S_t *ds); __DLL__ int H5S_get_simple_extent_dims(const H5S_t *ds, hsize_t dims[]/*out*/, hsize_t max_dims[]/*out*/); __DLL__ herr_t H5S_modify(struct H5G_entry_t *ent, const H5S_t *space); __DLL__ H5S_t *H5S_read(struct H5G_entry_t *ent); __DLL__ int H5S_cmp(const H5S_t *ds1, const H5S_t *ds2); __DLL__ htri_t H5S_is_simple(const H5S_t *sdim); __DLL__ unsigned H5S_nelem(const H5S_t *space); __DLL__ herr_t H5S_select_hyperslab(H5S_t *space, H5S_seloper_t op, const hssize_t start[], const hsize_t _stride[], const hsize_t count[], const hsize_t _block[]); __DLL__ int H5S_get_hyperslab(const H5S_t *ds, hssize_t offset[]/*out*/, hsize_t size[]/*out*/, hsize_t stride[]/*out*/); __DLL__ herr_t H5S_select_copy(H5S_t *dst, const H5S_t *src); __DLL__ herr_t H5S_extent_release(H5S_t *space); __DLL__ herr_t H5S_select_release(H5S_t *space); __DLL__ hssize_t H5S_get_select_npoints(const H5S_t *space); __DLL__ int H5S_extend(H5S_t *space, const hsize_t *size); __DLL__ herr_t H5S_set_extent_simple(H5S_t *space, int rank, const hsize_t *dims, const hsize_t *max); __DLL__ htri_t H5S_select_valid(const H5S_t *space); __DLL__ herr_t H5S_debug(H5F_t *f, const void *_mesg, FILE *stream, int indent, int fwidth); __DLL__ hssize_t H5S_select_serial_size(const H5S_t *space); __DLL__ herr_t H5S_select_serialize(const H5S_t *space, uint8_t *buf); __DLL__ herr_t H5S_select_deserialize(H5S_t *space, const uint8_t *buf); __DLL__ htri_t H5S_select_contiguous(const H5S_t *space); __DLL__ herr_t H5S_select_iterate(void *buf, hid_t type_id, H5S_t *space, H5D_operator_t op, void *operator_data); __DLL__ herr_t H5S_sel_iter_release(const H5S_t *space, H5S_sel_iter_t *sel_iter); #ifdef H5_HAVE_PARALLEL /* MPI-IO function to read directly from app buffer to file rky980813 */ __DLL__ herr_t H5S_mpio_spaces_read(H5F_t *f, const struct H5O_layout_t *layout, const struct H5O_pline_t *pline, const struct H5O_fill_t *fill, const struct H5O_efl_t *efl, size_t elmt_size, const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id, void *buf/*out*/, hbool_t *must_convert /*out*/ ); /* MPI-IO function to write directly from app buffer to file rky980813 */ __DLL__ herr_t H5S_mpio_spaces_write(H5F_t *f, const struct H5O_layout_t *layout, const struct H5O_pline_t *pline, const struct H5O_fill_t *fill, const struct H5O_efl_t *efl, size_t elmt_size, const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id, const void *buf, hbool_t *must_convert /*out*/ ); #ifndef _H5S_IN_H5S_C /* Global vars whose value comes from environment variable */ /* (Defined in H5S.c) */ __DLLVAR__ hbool_t H5S_mpi_opt_types_g; __DLLVAR__ hbool_t H5S_mpi_prefer_derived_types_g; #endif /* _H5S_IN_H5S_C */ #endif /* H5_HAVE_PARALLEL */ #endif /* _H5Sprivate_H */