/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * This is copied from use_append_chunk.c with modifications to show * the usage of H5Ocork/H5Ouncork/H5Ois_corked public routines. */ #include "h5test.h" #define H5D_PACKAGE #define H5D_TESTING #include "H5Dpkg.h" /* Global Variable definitions */ const char *progname_g="use_cork"; /* program name */ /* these two definitions must match each other */ #define UC_DATATYPE H5T_NATIVE_SHORT /* use case HDF5 data type */ #define UC_CTYPE short /* use case C data type */ #define UC_RANK 3 /* use case dataset rank */ #define Chunksize_DFT 256 /* chunksize default */ #define Hgoto_error(val) {ret_value=val; goto done;} char *filename_g; hsize_t nplanes_g; int use_swmr_g; int chunkplanes_g; int chunksize_g; hsize_t dims_g[UC_RANK]; hsize_t max_dims_g[UC_RANK]; hsize_t chunkdims_g[UC_RANK]; static void usage(const char *prog); static int parse_option(int argc, char * const argv[]); static void show_parameters(void); static int create_file(void); static int setup_parameters(int argc, char * const argv[]); /* * Note: Long options are not yet implemented. * * usage: use_cork [OPTIONS] * OPTIONS * -h, --help Print a usage message and exit * -f FN Test file name [default: use_cork.h5] * -n N, --nplanes=N Number of planes to write. [default: 1000] * -s N, --swmr=N Use SWMR mode (0: no, non-0: yes) default is yes * -z N, --chunksize=N Chunk size [default: 256] * -y N, --chunkplanes=N Number of planes per chunk [default: 1] */ static void usage(const char *prog) { fprintf(stderr, "usage: %s [OPTIONS]\n", prog); fprintf(stderr, " OPTIONS\n"); fprintf(stderr, " -h Print a usage message and exit\n"); fprintf(stderr, " -f FN Test file name [default: %s.h5]\n", prog); fprintf(stderr, " -n N Number of planes to write. [default: 1000]\n"); fprintf(stderr, " -s N Use SWMR mode (0: no, non-0: yes) default is yes\n"); fprintf(stderr, " -z N Chunk size [default: %d]\n", Chunksize_DFT); fprintf(stderr, " -y N Number of planes per chunk [default: 1]\n"); fprintf(stderr, "\n"); } /* usage() */ /* * Setup Use Case parameters by parsing command line options. * Setup default values if not set by options. */ static int parse_option(int argc, char * const argv[]) { int ret_value=0; int c; /* command line options: See function usage for a description */ const char *cmd_options = "f:hn:s:y:z:"; /* suppress getopt from printing error */ opterr = 0; while (1){ c = getopt (argc, argv, cmd_options); if (-1 == c) break; switch (c) { case 'h': usage(progname_g); exit(0); break; case 'f': /* usecase data file name */ filename_g = optarg; break; case 'n': /* number of planes to write/read */ if ((nplanes_g = atoi(optarg)) <= 0){ fprintf(stderr, "bad number of planes %s, must be a positive integer\n", optarg); usage(progname_g); Hgoto_error(-1); }; break; case 's': /* use swmr file open mode */ if ((use_swmr_g = atoi(optarg)) < 0){ fprintf(stderr, "swmr value should be 0(no) or 1(yes)\n"); usage(progname_g); Hgoto_error(-1); }; break; case 'y': /* Number of planes per chunk */ if ((chunkplanes_g = atoi(optarg)) <= 0){ fprintf(stderr, "bad number of planes per chunk %s, must be a positive integer\n", optarg); usage(progname_g); Hgoto_error(-1); }; break; case 'z': /* size of chunk=(z,z) */ if ((chunksize_g = atoi(optarg)) <= 0){ fprintf(stderr, "bad chunksize %s, must be a positive integer\n", optarg); usage(progname_g); Hgoto_error(-1); }; break; case '?': fprintf(stderr, "getopt returned '%c'.\n", c); Hgoto_error(-1); default: fprintf(stderr, "getopt returned unexpected value.\n"); fprintf(stderr, "Unexpected value is %d\n", c); Hgoto_error(-1); } } /* set test file name if not given */ if (!filename_g){ /* default data file name is .h5 */ if ((filename_g = (char*)HDmalloc(HDstrlen(progname_g)+4))==NULL) { fprintf(stderr, "malloc: failed\n"); Hgoto_error(-1); }; HDstrcpy(filename_g, progname_g); HDstrcat(filename_g, ".h5"); } done: /* All done. */ return(ret_value); } /* parse_option() */ /* Show parameters used for this use case */ static void show_parameters(void) { printf("===Parameters used:===\n"); printf("chunk dims=(%llu, %llu, %llu)\n", (unsigned long long)chunkdims_g[0], (unsigned long long)chunkdims_g[1], (unsigned long long)chunkdims_g[2]); printf("dataset max dims=(%llu, %llu, %llu)\n", (unsigned long long)max_dims_g[0], (unsigned long long)max_dims_g[1], (unsigned long long)max_dims_g[2]); printf("number of planes to write=%llu\n", (unsigned long long)nplanes_g); printf("using SWMR mode=%s\n", use_swmr_g ? "yes(1)" : "no(0)"); printf("data filename=%s\n", filename_g); printf("===Parameters shown===\n"); } /* show_parameters() */ /* * Setup parameters for the use case. * Return: 0 succeed; -1 fail. */ static int setup_parameters(int argc, char * const argv[]) { /* use case defaults */ chunksize_g = Chunksize_DFT; use_swmr_g = 1; /* use swmr open */ chunkplanes_g = 1; /* parse options */ if (parse_option(argc, argv) < 0){ return(-1); } /* set chunk dims */ chunkdims_g[0] = chunkplanes_g; chunkdims_g[1]= chunkdims_g[2] = chunksize_g; /* set dataset initial and max dims */ dims_g[0] = 0; max_dims_g[0] = H5S_UNLIMITED; dims_g[1] = dims_g[2] = max_dims_g[1] = max_dims_g[2] = chunksize_g; /* set nplanes */ if (nplanes_g == 0) nplanes_g = chunksize_g; /* show parameters and return */ show_parameters(); return(0); } /* setup_parameters() */ /* * Create the skeleton use case file for testing. * It has one 3d dataset using chunked storage. * The dataset is (unlimited, chunksize, chunksize). * Dataset type is 2 bytes integer. * It starts out "empty", i.e., first dimension is 0. * * Return: 0 succeed; -1 fail. */ static int create_file(void) { hsize_t dims[3]; /* Dataset starting dimensions */ hid_t fid; /* File ID for new HDF5 file */ hid_t dcpl; /* Dataset creation property list */ hid_t sid; /* Dataspace ID */ hid_t dsid; /* Dataset ID */ hid_t fapl; /* File access property list */ H5D_chunk_index_t idx_type; /* Chunk index type */ /* Create the file */ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) return -1; if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) return -1; if((fid = H5Fcreate(filename_g, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) return -1; /* Set up dimension sizes */ dims[0] = 0; dims[1] = dims[2] = max_dims_g[1]; /* Create dataspace for creating datasets */ if((sid = H5Screate_simple(3, dims, max_dims_g)) < 0) return -1; /* Create dataset creation property list */ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) return -1; if(H5Pset_chunk(dcpl, 3, chunkdims_g) < 0) return -1; /* create dataset of progname */ if((dsid = H5Dcreate2(fid, progname_g, UC_DATATYPE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) return -1; /* Check that the chunk index type is not version 1 B-tree. * Version 1 B-trees are not supported under SWMR. */ if(H5D__layout_idx_type_test(dsid, &idx_type) < 0) return -1; if(idx_type == H5D_CHUNK_IDX_BTREE) { fprintf(stderr, "ERROR: Chunk index is version 1 B-tree: aborting.\n"); return -1; } /* Close everything */ if(H5Dclose(dsid) < 0) return -1; if(H5Pclose(fapl) < 0) return -1; if(H5Pclose(dcpl) < 0) return -1; if(H5Sclose(sid) < 0) return -1; if(H5Fclose(fid) < 0) return -1; return 0; } /* create_file() */ /* * Append planes, each of (1,2*chunksize,2*chunksize) to the dataset. * In other words, 4 chunks are appended to the dataset at a time. * Fill each plane with the plane number and then write it at the nth plane. * Increase the plane number and repeat till the end of dataset, when it * reaches chunksize long. End product is a (2*chunksize)^3 cube. * * Return: 0 succeed; -1 fail. */ static int write_file(void) { hid_t fid; /* File ID for new HDF5 file */ hid_t dsid; /* dataset ID */ hid_t fapl; /* File access property list */ hid_t dcpl; /* Dataset creation property list */ char *name; UC_CTYPE *buffer, *bufptr; /* data buffer */ hsize_t cz=chunksize_g; /* Chunk size */ hid_t f_sid; /* dataset file space id */ hid_t m_sid; /* memory space id */ int rank; /* rank */ hsize_t chunk_dims[3]; /* Chunk dimensions */ hsize_t dims[3]; /* Dataspace dimensions */ hsize_t memdims[3]; /* Memory space dimensions */ hsize_t start[3] = {0,0,0}, count[3]; /* Hyperslab selection values */ hbool_t corked; /* Object's cork status */ hsize_t i, j, k; name = filename_g; /* Open the file */ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) return -1; if(use_swmr_g) if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) return -1; if((fid = H5Fopen(name, H5F_ACC_RDWR | (use_swmr_g ? H5F_ACC_SWMR_WRITE : 0), fapl)) < 0){ fprintf(stderr, "H5Fopen failed\n"); return -1; } /* Open the dataset of the program name */ if((dsid = H5Dopen2(fid, progname_g, H5P_DEFAULT)) < 0){ fprintf(stderr, "H5Dopen2 failed\n"); return -1; } /* Cork the datset */ if(H5Ocork(dsid) < 0) { fprintf(stderr, "H5Ocork failed\n"); return -1; } /* Get cork status of the dataset */ if(H5Ois_corked(dsid, &corked) < 0) { fprintf(stderr, "H5Ois_corked failed\n"); return -1; } else if(corked) printf("Dataset is corked.\n"); else printf("Dataset should be corked.\n"); /* Find chunksize used */ if ((dcpl = H5Dget_create_plist(dsid)) < 0){ fprintf(stderr, "H5Dget_create_plist failed\n"); return -1; } if (H5D_CHUNKED != H5Pget_layout(dcpl)){ fprintf(stderr, "storage layout is not chunked\n"); return -1; } if ((rank = H5Pget_chunk(dcpl, 3, chunk_dims)) != 3){ fprintf(stderr, "storage rank is not 3\n"); return -1; } /* verify chunk_dims against set paramenters */ if (chunk_dims[0]!= chunkdims_g[0] || chunk_dims[1] != cz || chunk_dims[2] != cz){ fprintf(stderr, "chunk size is not as expected. Got dims=(%llu,%llu,%llu)\n", (unsigned long long)chunk_dims[0], (unsigned long long)chunk_dims[1], (unsigned long long)chunk_dims[2]); return -1; } /* allocate space for data buffer 1 X dims[1] X dims[2] of UC_CTYPE */ memdims[0]=1; memdims[1] = dims_g[1]; memdims[2] = dims_g[2]; if ((buffer=(UC_CTYPE*)HDmalloc((size_t)memdims[1]*(size_t)memdims[2]*sizeof(UC_CTYPE)))==NULL) { fprintf(stderr, "malloc: failed\n"); return -1; }; /* * Get dataset rank and dimension. */ f_sid = H5Dget_space(dsid); /* Get filespace handle first. */ rank = H5Sget_simple_extent_ndims(f_sid); if (rank != UC_RANK){ fprintf(stderr, "rank(%d) of dataset does not match\n", rank); return -1; } if (H5Sget_simple_extent_dims(f_sid, dims, NULL) < 0){ fprintf(stderr, "H5Sget_simple_extent_dims got error\n"); return -1; } printf("dataset rank %d, dimensions %llu x %llu x %llu\n", rank, (unsigned long long)(dims[0]), (unsigned long long)(dims[1]), (unsigned long long)(dims[2])); /* verify that file space dims are as expected and are consistent with memory space dims */ if (dims[0] != 0 || dims[1] != memdims[1] || dims[2] != memdims[2]){ fprintf(stderr, "dataset is not empty. Got dims=(%llu,%llu,%llu)\n", (unsigned long long)dims[0], (unsigned long long)dims[1], (unsigned long long)dims[2]); return -1; } /* setup mem-space for buffer */ if ((m_sid=H5Screate_simple(rank, memdims, NULL))<0){ fprintf(stderr, "H5Screate_simple for memory failed\n"); return -1; }; /* write planes */ count[0]=1; count[1]=dims[1]; count[2]=dims[2]; for (i=0; i