/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * Parallel tests for file operations */ #include "testphdf5.h" #include "H5CXprivate.h" /* API Contexts */ #include "H5Iprivate.h" #include "H5PBprivate.h" /* * This file needs to access private information from the H5F package. */ #define H5AC_FRIEND /*suppress error about including H5ACpkg */ #include "H5ACpkg.h" #define H5C_FRIEND /*suppress error about including H5Cpkg */ #include "H5Cpkg.h" #define H5F_FRIEND /*suppress error about including H5Fpkg */ #define H5F_TESTING #include "H5Fpkg.h" #define H5MF_FRIEND /*suppress error about including H5MFpkg */ #include "H5MFpkg.h" #define NUM_DSETS 5 int mpi_size, mpi_rank; static int create_file(const char *filename, hid_t fcpl, hid_t fapl, int metadata_write_strategy); static int open_file(const char *filename, hid_t fapl, int metadata_write_strategy, hsize_t page_size, size_t page_buffer_size); /* * test file access by communicator besides COMM_WORLD. * Split COMM_WORLD into two, one (even_comm) contains the original * processes of even ranks. The other (odd_comm) contains the original * processes of odd ranks. Processes in even_comm creates a file, then * cloose it, using even_comm. Processes in old_comm just do a barrier * using odd_comm. Then they all do a barrier using COMM_WORLD. * If the file creation and cloose does not do correct collective action * according to the communicator argument, the processes will freeze up * sooner or later due to barrier mixed up. */ void test_split_comm_access(void) { MPI_Comm comm; MPI_Info info = MPI_INFO_NULL; int is_old, mrc; int newrank, newprocs; hid_t fid; /* file IDs */ hid_t acc_tpl; /* File access properties */ herr_t ret; /* generic return value */ const char *filename; filename = (const char *)GetTestParameters(); if (VERBOSE_MED) HDprintf("Split Communicator access test on file %s\n", filename); /* set up MPI parameters */ MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); is_old = mpi_rank % 2; mrc = MPI_Comm_split(MPI_COMM_WORLD, is_old, mpi_rank, &comm); VRFY((mrc == MPI_SUCCESS), ""); MPI_Comm_size(comm, &newprocs); MPI_Comm_rank(comm, &newrank); if (is_old) { /* odd-rank processes */ mrc = MPI_Barrier(comm); VRFY((mrc == MPI_SUCCESS), ""); } else { /* even-rank processes */ int sub_mpi_rank; /* rank in the sub-comm */ MPI_Comm_rank(comm, &sub_mpi_rank); /* setup file access template */ acc_tpl = create_faccess_plist(comm, info, facc_type); VRFY((acc_tpl >= 0), ""); /* create the file collectively */ fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl); VRFY((fid >= 0), "H5Fcreate succeeded"); /* Release file-access template */ ret = H5Pclose(acc_tpl); VRFY((ret >= 0), ""); /* close the file */ ret = H5Fclose(fid); VRFY((ret >= 0), ""); /* delete the test file */ if (sub_mpi_rank == 0) { mrc = MPI_File_delete(filename, info); /*VRFY((mrc==MPI_SUCCESS), ""); */ } } mrc = MPI_Comm_free(&comm); VRFY((mrc == MPI_SUCCESS), "MPI_Comm_free succeeded"); mrc = MPI_Barrier(MPI_COMM_WORLD); VRFY((mrc == MPI_SUCCESS), "final MPI_Barrier succeeded"); } void test_page_buffer_access(void) { hid_t file_id = -1; /* File ID */ hid_t fcpl, fapl; #if 0 hid_t fapl_self; #endif size_t page_count = 0; int i, num_elements = 200; haddr_t raw_addr, meta_addr; int *data; H5F_t *f = NULL; herr_t ret; /* generic return value */ const char *filename; hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); filename = (const char *)GetTestParameters(); if (VERBOSE_MED) HDprintf("Page Buffer Usage in Parallel %s\n", filename); fapl = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type); VRFY((fapl >= 0), "create_faccess_plist succeeded"); fcpl = H5Pcreate(H5P_FILE_CREATE); VRFY((fcpl >= 0), ""); ret = H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_PAGE, 1, (hsize_t)0); VRFY((ret == 0), ""); ret = H5Pset_file_space_page_size(fcpl, sizeof(int) * 100); VRFY((ret == 0), ""); ret = H5Pset_page_buffer_size(fapl, sizeof(int) * 100000, 0, 0); VRFY((ret == 0), ""); /* This should fail because collective metadata writes are not supported with page buffering */ H5E_BEGIN_TRY { file_id = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl); } H5E_END_TRY; VRFY((file_id < 0), "H5Fcreate failed"); /* disable collective metadata writes for page buffering to work */ ret = H5Pset_coll_metadata_write(fapl, FALSE); VRFY((ret >= 0), ""); ret = create_file(filename, fcpl, fapl, H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED); VRFY((ret == 0), ""); ret = open_file(filename, fapl, H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED, sizeof(int) * 100, sizeof(int) * 100000); VRFY((ret == 0), ""); ret = create_file(filename, fcpl, fapl, H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY); VRFY((ret == 0), ""); ret = open_file(filename, fapl, H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY, sizeof(int) * 100, sizeof(int) * 100000); VRFY((ret == 0), ""); ret = H5Pset_file_space_page_size(fcpl, sizeof(int) * 100); VRFY((ret == 0), ""); data = (int *)HDmalloc(sizeof(int) * (size_t)num_elements); /* initialize all the elements to have a value of -1 */ for (i = 0; i < num_elements; i++) data[i] = -1; /* MSC - why this stopped working ? */ #if 0 if(MAINPROCESS) { hid_t fapl_self; fapl_self = create_faccess_plist(MPI_COMM_SELF, MPI_INFO_NULL, facc_type); ret = H5Pset_page_buffer_size(fapl_self, sizeof(int) * 1000, 0, 0); VRFY((ret == 0), ""); /* collective metadata writes do not work with page buffering */ ret = H5Pset_coll_metadata_write(fapl_self, FALSE); VRFY((ret >= 0), ""); file_id = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl_self); VRFY((file_id >= 0), ""); /* Push API context */ ret = H5CX_push(); VRFY((ret == 0), "H5CX_push()"); api_ctx_pushed = TRUE; /* Get a pointer to the internal file object */ f = (H5F_t *)H5I_object(file_id); VRFY((f->shared->page_buf != NULL), "Page Buffer created with 1 process"); /* allocate space for 200 raw elements */ raw_addr = H5MF_alloc(f, H5FD_MEM_DRAW, sizeof(int) * (size_t)num_elements); VRFY((raw_addr != HADDR_UNDEF), ""); /* allocate space for 200 metadata elements */ meta_addr = H5MF_alloc(f, H5FD_MEM_SUPER, sizeof(int) * (size_t)num_elements); VRFY((meta_addr != HADDR_UNDEF), ""); page_count = 0; ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * (size_t)num_elements, data); VRFY((ret == 0), ""); ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * (size_t)num_elements, data); ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * (size_t)num_elements, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); /* update the first 50 elements */ for (i = 0; i < 50; i++) data[i] = i; ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * 50, data); H5Eprint2(H5E_DEFAULT, stderr); VRFY((ret == 0), ""); ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); page_count += 2; VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); /* update the second 50 elements */ for (i = 0; i < 50; i++) data[i] = i + 50; ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr + (sizeof(int) * 50), sizeof(int) * 50, data); VRFY((ret == 0), ""); ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr + (sizeof(int) * 50), sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); /* update 100 - 200 */ for (i = 0; i < 100; i++) data[i] = i + 100; ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr + (sizeof(int) * 100), sizeof(int) * 100, data); VRFY((ret == 0), ""); ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr + (sizeof(int) * 100), sizeof(int) * 100, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); ret = H5PB_flush(f, FALSE); VRFY((ret == 0), ""); /* read elements 0 - 200 */ ret = H5F_block_read(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * 200, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 200; i++) VRFY((data[i] == i), "Read different values than written"); ret = H5F_block_read(f, H5FD_MEM_SUPER, meta_addr, sizeof(int)*200, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 200; i++) VRFY((data[i] == i), "Read different values than written"); /* read elements 0 - 50 */ ret = H5F_block_read(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 50; i++) VRFY((data[i] == i), "Read different values than written"); ret = H5F_block_read(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 50; i++) VRFY((data[i] == i), "Read different values than written"); /* close the file */ ret = H5Fclose(file_id); VRFY((ret >= 0), "H5Fclose succeeded"); ret = H5Pclose(fapl_self); VRFY((ret >= 0), "H5Pclose succeeded"); /* Pop API context */ if (api_ctx_pushed) { ret = H5CX_pop(); VRFY((ret == 0), "H5CX_pop()"); api_ctx_pushed = FALSE; } } #endif MPI_Barrier(MPI_COMM_WORLD); if (mpi_size > 1) { ret = H5Pset_page_buffer_size(fapl, sizeof(int) * 1000, 0, 0); VRFY((ret == 0), ""); /* collective metadata writes do not work with page buffering */ ret = H5Pset_coll_metadata_write(fapl, FALSE); VRFY((ret >= 0), ""); file_id = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl); VRFY((file_id >= 0), ""); /* Push API context */ ret = H5CX_push(); VRFY((ret == 0), "H5CX_push()"); api_ctx_pushed = TRUE; /* Get a pointer to the internal file object */ f = (H5F_t *)H5I_object(file_id); VRFY((f->shared->page_buf != NULL), "Page Buffer created with 1 process"); /* allocate space for 200 raw elements */ raw_addr = H5MF_alloc(f, H5FD_MEM_DRAW, sizeof(int) * (size_t)num_elements); VRFY((raw_addr != HADDR_UNDEF), ""); /* allocate space for 200 metadata elements */ meta_addr = H5MF_alloc(f, H5FD_MEM_SUPER, sizeof(int) * (size_t)num_elements); VRFY((meta_addr != HADDR_UNDEF), ""); page_count = 0; ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * (size_t)num_elements, data); VRFY((ret == 0), ""); ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * (size_t)num_elements, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); /* update the first 50 elements */ for (i = 0; i < 50; i++) data[i] = i; ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); /* update the second 50 elements */ for (i = 0; i < 50; i++) data[i] = i + 50; ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr + (sizeof(int) * 50), sizeof(int) * 50, data); VRFY((ret == 0), ""); ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr + (sizeof(int) * 50), sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); /* update 100 - 200 */ for (i = 0; i < 100; i++) data[i] = i + 100; ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr + (sizeof(int) * 100), sizeof(int) * 100, data); VRFY((ret == 0), ""); ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr + (sizeof(int) * 100), sizeof(int) * 100, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); ret = H5Fflush(file_id, H5F_SCOPE_GLOBAL); VRFY((ret == 0), ""); /* read elements 0 - 200 */ ret = H5F_block_read(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * 200, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 200; i++) VRFY((data[i] == i), "Read different values than written"); ret = H5F_block_read(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * 200, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 200; i++) VRFY((data[i] == i), "Read different values than written"); /* read elements 0 - 50 */ ret = H5F_block_read(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 50; i++) VRFY((data[i] == i), "Read different values than written"); ret = H5F_block_read(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); page_count += 1; VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 50; i++) VRFY((data[i] == i), "Read different values than written"); MPI_Barrier(MPI_COMM_WORLD); /* reset the first 50 elements to -1*/ for (i = 0; i < 50; i++) data[i] = -1; ret = H5F_block_write(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); ret = H5F_block_write(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); /* read elements 0 - 50 */ ret = H5F_block_read(f, H5FD_MEM_DRAW, raw_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 50; i++) VRFY((data[i] == -1), "Read different values than written"); ret = H5F_block_read(f, H5FD_MEM_SUPER, meta_addr, sizeof(int) * 50, data); VRFY((ret == 0), ""); VRFY((H5SL_count(f->shared->page_buf->slist_ptr) == page_count), "Wrong number of pages in PB"); for (i = 0; i < 50; i++) VRFY((data[i] == -1), "Read different values than written"); /* close the file */ ret = H5Fclose(file_id); VRFY((ret >= 0), "H5Fclose succeeded"); } ret = H5Pclose(fapl); VRFY((ret >= 0), "H5Pclose succeeded"); ret = H5Pclose(fcpl); VRFY((ret >= 0), "H5Pclose succeeded"); /* Pop API context */ if (api_ctx_pushed) { ret = H5CX_pop(); VRFY((ret == 0), "H5CX_pop()"); api_ctx_pushed = FALSE; } HDfree(data); data = NULL; MPI_Barrier(MPI_COMM_WORLD); } static int create_file(const char *filename, hid_t fcpl, hid_t fapl, int metadata_write_strategy) { hid_t file_id, dset_id, grp_id; hid_t sid, mem_dataspace; hsize_t start[RANK]; hsize_t count[RANK]; hsize_t stride[RANK]; hsize_t block[RANK]; DATATYPE *data_array = NULL; hsize_t dims[RANK], i; hsize_t num_elements; int k; char dset_name[10]; H5F_t *f = NULL; H5C_t *cache_ptr = NULL; H5AC_cache_config_t config; hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ herr_t ret; file_id = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl); VRFY((file_id >= 0), ""); ret = H5Fflush(file_id, H5F_SCOPE_GLOBAL); VRFY((ret == 0), ""); /* Push API context */ ret = H5CX_push(); VRFY((ret == 0), "H5CX_push()"); api_ctx_pushed = TRUE; f = (H5F_t *)H5I_object(file_id); VRFY((f != NULL), ""); cache_ptr = f->shared->cache; VRFY((cache_ptr->magic == H5C__H5C_T_MAGIC), ""); cache_ptr->ignore_tags = TRUE; H5C_stats__reset(cache_ptr); config.version = H5AC__CURR_CACHE_CONFIG_VERSION; ret = H5AC_get_cache_auto_resize_config(cache_ptr, &config); VRFY((ret == 0), ""); config.metadata_write_strategy = metadata_write_strategy; ret = H5AC_set_cache_auto_resize_config(cache_ptr, &config); VRFY((ret == 0), ""); grp_id = H5Gcreate2(file_id, "GROUP", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); VRFY((grp_id >= 0), ""); dims[0] = (hsize_t)(ROW_FACTOR * mpi_size); dims[1] = (hsize_t)(COL_FACTOR * mpi_size); sid = H5Screate_simple(RANK, dims, NULL); VRFY((sid >= 0), "H5Screate_simple succeeded"); /* Each process takes a slabs of rows. */ block[0] = dims[0] / (hsize_t)mpi_size; block[1] = dims[1]; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; start[0] = (hsize_t)mpi_rank * block[0]; start[1] = 0; num_elements = block[0] * block[1]; /* allocate memory for data buffer */ data_array = (DATATYPE *)HDmalloc(num_elements * sizeof(DATATYPE)); VRFY((data_array != NULL), "data_array HDmalloc succeeded"); /* put some trivial data in the data_array */ for (i = 0; i < num_elements; i++) data_array[i] = mpi_rank + 1; ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block); VRFY((ret >= 0), "H5Sset_hyperslab succeeded"); /* create a memory dataspace independently */ mem_dataspace = H5Screate_simple(1, &num_elements, NULL); VRFY((mem_dataspace >= 0), ""); for (k = 0; k < NUM_DSETS; k++) { HDsprintf(dset_name, "D1dset%d", k); dset_id = H5Dcreate2(grp_id, dset_name, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); VRFY((dset_id >= 0), ""); ret = H5Dclose(dset_id); VRFY((ret == 0), ""); HDsprintf(dset_name, "D2dset%d", k); dset_id = H5Dcreate2(grp_id, dset_name, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); VRFY((dset_id >= 0), ""); ret = H5Dclose(dset_id); VRFY((ret == 0), ""); HDsprintf(dset_name, "D3dset%d", k); dset_id = H5Dcreate2(grp_id, dset_name, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); VRFY((dset_id >= 0), ""); ret = H5Dclose(dset_id); VRFY((ret == 0), ""); HDsprintf(dset_name, "dset%d", k); dset_id = H5Dcreate2(grp_id, dset_name, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); VRFY((dset_id >= 0), ""); ret = H5Dwrite(dset_id, H5T_NATIVE_INT, mem_dataspace, sid, H5P_DEFAULT, data_array); VRFY((ret == 0), ""); ret = H5Dclose(dset_id); VRFY((ret == 0), ""); HDmemset(data_array, 0, num_elements * sizeof(DATATYPE)); dset_id = H5Dopen2(grp_id, dset_name, H5P_DEFAULT); VRFY((dset_id >= 0), ""); ret = H5Dread(dset_id, H5T_NATIVE_INT, mem_dataspace, sid, H5P_DEFAULT, data_array); VRFY((ret == 0), ""); ret = H5Dclose(dset_id); VRFY((ret == 0), ""); for (i = 0; i < num_elements; i++) VRFY((data_array[i] == mpi_rank + 1), "Dataset Verify failed"); HDsprintf(dset_name, "D1dset%d", k); ret = H5Ldelete(grp_id, dset_name, H5P_DEFAULT); VRFY((ret == 0), ""); HDsprintf(dset_name, "D2dset%d", k); ret = H5Ldelete(grp_id, dset_name, H5P_DEFAULT); VRFY((ret == 0), ""); HDsprintf(dset_name, "D3dset%d", k); ret = H5Ldelete(grp_id, dset_name, H5P_DEFAULT); VRFY((ret == 0), ""); } ret = H5Gclose(grp_id); VRFY((ret == 0), ""); ret = H5Fclose(file_id); VRFY((ret == 0), ""); ret = H5Sclose(sid); VRFY((ret == 0), ""); ret = H5Sclose(mem_dataspace); VRFY((ret == 0), ""); /* Pop API context */ if (api_ctx_pushed) { ret = H5CX_pop(); VRFY((ret == 0), "H5CX_pop()"); api_ctx_pushed = FALSE; } MPI_Barrier(MPI_COMM_WORLD); HDfree(data_array); return 0; } /* create_file */ static int open_file(const char *filename, hid_t fapl, int metadata_write_strategy, hsize_t page_size, size_t page_buffer_size) { hid_t file_id, dset_id, grp_id, grp_id2; hid_t sid, mem_dataspace; DATATYPE *data_array = NULL; hsize_t dims[RANK]; hsize_t start[RANK]; hsize_t count[RANK]; hsize_t stride[RANK]; hsize_t block[RANK]; int i, k, ndims; hsize_t num_elements; char dset_name[10]; H5F_t *f = NULL; H5C_t *cache_ptr = NULL; H5AC_cache_config_t config; hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ herr_t ret; config.version = H5AC__CURR_CACHE_CONFIG_VERSION; ret = H5Pget_mdc_config(fapl, &config); VRFY((ret == 0), ""); config.metadata_write_strategy = metadata_write_strategy; ret = H5Pget_mdc_config(fapl, &config); VRFY((ret == 0), ""); file_id = H5Fopen(filename, H5F_ACC_RDWR, fapl); H5Eprint2(H5E_DEFAULT, stderr); VRFY((file_id >= 0), ""); /* Push API context */ ret = H5CX_push(); VRFY((ret == 0), "H5CX_push()"); api_ctx_pushed = TRUE; ret = H5Fflush(file_id, H5F_SCOPE_GLOBAL); VRFY((ret == 0), ""); f = (H5F_t *)H5I_object(file_id); VRFY((f != NULL), ""); cache_ptr = f->shared->cache; VRFY((cache_ptr->magic == H5C__H5C_T_MAGIC), ""); MPI_Barrier(MPI_COMM_WORLD); VRFY((f->shared->page_buf != NULL), ""); VRFY((f->shared->page_buf->page_size == page_size), ""); VRFY((f->shared->page_buf->max_size == page_buffer_size), ""); grp_id = H5Gopen2(file_id, "GROUP", H5P_DEFAULT); VRFY((grp_id >= 0), ""); dims[0] = (hsize_t)(ROW_FACTOR * mpi_size); dims[1] = (hsize_t)(COL_FACTOR * mpi_size); /* Each process takes a slabs of rows. */ block[0] = dims[0] / (hsize_t)mpi_size; block[1] = dims[1]; stride[0] = block[0]; stride[1] = block[1]; count[0] = 1; count[1] = 1; start[0] = (hsize_t)mpi_rank * block[0]; start[1] = 0; num_elements = block[0] * block[1]; /* allocate memory for data buffer */ data_array = (DATATYPE *)HDmalloc(num_elements * sizeof(DATATYPE)); VRFY((data_array != NULL), "data_array HDmalloc succeeded"); /* create a memory dataspace independently */ mem_dataspace = H5Screate_simple(1, &num_elements, NULL); VRFY((mem_dataspace >= 0), ""); for (k = 0; k < NUM_DSETS; k++) { HDsprintf(dset_name, "dset%d", k); dset_id = H5Dopen2(grp_id, dset_name, H5P_DEFAULT); VRFY((dset_id >= 0), ""); sid = H5Dget_space(dset_id); VRFY((dset_id >= 0), "H5Dget_space succeeded"); ndims = H5Sget_simple_extent_dims(sid, dims, NULL); VRFY((ndims == 2), "H5Sget_simple_extent_dims succeeded"); VRFY(dims[0] == (hsize_t)(ROW_FACTOR * mpi_size), "Wrong dataset dimensions"); VRFY(dims[1] == (hsize_t)(COL_FACTOR * mpi_size), "Wrong dataset dimensions"); ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, stride, count, block); VRFY((ret >= 0), "H5Sset_hyperslab succeeded"); ret = H5Dread(dset_id, H5T_NATIVE_INT, mem_dataspace, sid, H5P_DEFAULT, data_array); VRFY((ret >= 0), ""); ret = H5Dclose(dset_id); VRFY((ret >= 0), ""); ret = H5Sclose(sid); VRFY((ret == 0), ""); for (i = 0; i < (int)num_elements; i++) VRFY((data_array[i] == mpi_rank + 1), "Dataset Verify failed"); } grp_id2 = H5Gcreate2(file_id, "GROUP/GROUP2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); VRFY((grp_id2 >= 0), ""); ret = H5Gclose(grp_id2); VRFY((ret == 0), ""); ret = H5Fflush(file_id, H5F_SCOPE_GLOBAL); VRFY((ret == 0), ""); MPI_Barrier(MPI_COMM_WORLD); /* flush invalidate each ring, starting from the outermost ring and * working inward. */ for (i = 0; i < H5C__HASH_TABLE_LEN; i++) { H5C_cache_entry_t *entry_ptr = NULL; entry_ptr = cache_ptr->index[i]; while (entry_ptr != NULL) { HDassert(entry_ptr->magic == H5C__H5C_CACHE_ENTRY_T_MAGIC); HDassert(entry_ptr->is_dirty == FALSE); if (!entry_ptr->is_pinned && !entry_ptr->is_protected) { ret = H5AC_expunge_entry(f, entry_ptr->type, entry_ptr->addr, 0); VRFY((ret == 0), ""); } entry_ptr = entry_ptr->ht_next; } } MPI_Barrier(MPI_COMM_WORLD); grp_id2 = H5Gopen2(file_id, "GROUP/GROUP2", H5P_DEFAULT); H5Eprint2(H5E_DEFAULT, stderr); VRFY((grp_id2 >= 0), ""); ret = H5Gclose(grp_id2); H5Eprint2(H5E_DEFAULT, stderr); VRFY((ret == 0), ""); ret = H5Gclose(grp_id); VRFY((ret == 0), ""); ret = H5Fclose(file_id); VRFY((ret == 0), ""); ret = H5Sclose(mem_dataspace); VRFY((ret == 0), ""); /* Pop API context */ if (api_ctx_pushed) { ret = H5CX_pop(); VRFY((ret == 0), "H5CX_pop()"); api_ctx_pushed = FALSE; } HDfree(data_array); return nerrors; } void test_file_properties(void) { hid_t fid; /* HDF5 file ID */ hid_t fapl_id; /* File access plist */ hbool_t is_coll; const char *filename; MPI_Comm comm = MPI_COMM_WORLD; MPI_Info info = MPI_INFO_NULL; herr_t ret; /* Generic return value */ filename = (const char *)GetTestParameters(); /* set up MPI parameters */ MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); /* setup file access plist */ fapl_id = H5Pcreate(H5P_FILE_ACCESS); VRFY((fapl_id >= 0), "H5Pcreate"); ret = H5Pset_fapl_mpio(fapl_id, comm, info); VRFY((ret >= 0), "H5Pset_fapl_mpio"); /* create the file */ fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_id); VRFY((fid >= 0), "H5Fcreate succeeded"); /* verify settings for file access properties */ /* Collective metadata writes */ ret = H5Pget_coll_metadata_write(fapl_id, &is_coll); VRFY((ret >= 0), "H5Pget_coll_metadata_write succeeded"); VRFY((is_coll == FALSE), "Incorrect property setting for coll metadata writes"); /* Collective metadata read API calling requirement */ ret = H5Pget_all_coll_metadata_ops(fapl_id, &is_coll); VRFY((ret >= 0), "H5Pget_all_coll_metadata_ops succeeded"); VRFY((is_coll == FALSE), "Incorrect property setting for coll metadata API calls requirement"); ret = H5Fclose(fid); VRFY((ret >= 0), "H5Fclose succeeded"); /* Open the file with the MPI-IO driver */ ret = H5Pset_fapl_mpio(fapl_id, comm, info); VRFY((ret >= 0), "H5Pset_fapl_mpio failed"); fid = H5Fopen(filename, H5F_ACC_RDWR, fapl_id); VRFY((fid >= 0), "H5Fcreate succeeded"); /* verify settings for file access properties */ /* Collective metadata writes */ ret = H5Pget_coll_metadata_write(fapl_id, &is_coll); VRFY((ret >= 0), "H5Pget_coll_metadata_write succeeded"); VRFY((is_coll == FALSE), "Incorrect property setting for coll metadata writes"); /* Collective metadata read API calling requirement */ ret = H5Pget_all_coll_metadata_ops(fapl_id, &is_coll); VRFY((ret >= 0), "H5Pget_all_coll_metadata_ops succeeded"); VRFY((is_coll == FALSE), "Incorrect property setting for coll metadata API calls requirement"); ret = H5Fclose(fid); VRFY((ret >= 0), "H5Fclose succeeded"); /* Open the file with the MPI-IO driver w collective settings */ ret = H5Pset_fapl_mpio(fapl_id, comm, info); VRFY((ret >= 0), "H5Pset_fapl_mpio failed"); /* Collective metadata writes */ ret = H5Pset_coll_metadata_write(fapl_id, TRUE); VRFY((ret >= 0), "H5Pget_coll_metadata_write succeeded"); /* Collective metadata read API calling requirement */ ret = H5Pset_all_coll_metadata_ops(fapl_id, TRUE); VRFY((ret >= 0), "H5Pget_all_coll_metadata_ops succeeded"); fid = H5Fopen(filename, H5F_ACC_RDWR, fapl_id); VRFY((fid >= 0), "H5Fcreate succeeded"); /* verify settings for file access properties */ /* Collective metadata writes */ ret = H5Pget_coll_metadata_write(fapl_id, &is_coll); VRFY((ret >= 0), "H5Pget_coll_metadata_write succeeded"); VRFY((is_coll == TRUE), "Incorrect property setting for coll metadata writes"); /* Collective metadata read API calling requirement */ ret = H5Pget_all_coll_metadata_ops(fapl_id, &is_coll); VRFY((ret >= 0), "H5Pget_all_coll_metadata_ops succeeded"); VRFY((is_coll == TRUE), "Incorrect property setting for coll metadata API calls requirement"); /* close fapl and retrieve it from file */ ret = H5Pclose(fapl_id); VRFY((ret >= 0), "H5Pclose succeeded"); fapl_id = -1; fapl_id = H5Fget_access_plist(fid); VRFY((fapl_id >= 0), "H5P_FILE_ACCESS"); /* verify settings for file access properties */ /* Collective metadata writes */ ret = H5Pget_coll_metadata_write(fapl_id, &is_coll); VRFY((ret >= 0), "H5Pget_coll_metadata_write succeeded"); VRFY((is_coll == TRUE), "Incorrect property setting for coll metadata writes"); /* Collective metadata read API calling requirement */ ret = H5Pget_all_coll_metadata_ops(fapl_id, &is_coll); VRFY((ret >= 0), "H5Pget_all_coll_metadata_ops succeeded"); VRFY((is_coll == TRUE), "Incorrect property setting for coll metadata API calls requirement"); /* close file */ ret = H5Fclose(fid); VRFY((ret >= 0), "H5Fclose succeeded"); /* Release file-access plist */ ret = H5Pclose(fapl_id); VRFY((ret >= 0), "H5Pclose succeeded"); } /* end test_file_properties() */ /* * Tests for an assertion failure during file close that used * to occur when the library fails to create a file in parallel * due to an invalid library version bounds setting */ void test_invalid_libver_bounds_file_close_assert(void) { const char *filename = NULL; MPI_Comm comm = MPI_COMM_WORLD; MPI_Info info = MPI_INFO_NULL; herr_t ret; hid_t fid = H5I_INVALID_HID; hid_t fapl_id = H5I_INVALID_HID; hid_t fcpl_id = H5I_INVALID_HID; filename = (const char *)GetTestParameters(); /* set up MPI parameters */ MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); /* setup file access plist */ fapl_id = H5Pcreate(H5P_FILE_ACCESS); VRFY((fapl_id != H5I_INVALID_HID), "H5Pcreate"); ret = H5Pset_fapl_mpio(fapl_id, comm, info); VRFY((SUCCEED == ret), "H5Pset_fapl_mpio"); ret = H5Pset_libver_bounds(fapl_id, H5F_LIBVER_EARLIEST, H5F_LIBVER_V18); VRFY((SUCCEED == ret), "H5Pset_libver_bounds"); /* setup file creation plist */ fcpl_id = H5Pcreate(H5P_FILE_CREATE); VRFY((fcpl_id != H5I_INVALID_HID), "H5Pcreate"); ret = H5Pset_file_space_strategy(fcpl_id, H5F_FSPACE_STRATEGY_PAGE, TRUE, 1); VRFY((SUCCEED == ret), "H5Pset_file_space_strategy"); /* create the file */ H5E_BEGIN_TRY { fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl_id, fapl_id); } H5E_END_TRY VRFY((fid == H5I_INVALID_HID), "H5Fcreate"); ret = H5Pclose(fapl_id); VRFY((SUCCEED == ret), "H5Pclose"); ret = H5Pclose(fcpl_id); VRFY((SUCCEED == ret), "H5Pclose"); }