/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * Main driver of the Parallel HDF5 tests */ #include "testphdf5.h" #ifndef PATH_MAX #define PATH_MAX 512 #endif /* !PATH_MAX */ /* global variables */ int dim0 = DIM0; int dim1 = DIM1; int chunkdim0; int chunkdim1; int nerrors = 0; /* errors count */ int ndatasets = 300; /* number of datasets to create*/ int ngroups = 512; /* number of groups to create in root * group. */ int facc_type = FACC_MPIO; /*Test file access type */ H5E_auto_t old_func; /* previous error handler */ void *old_client_data; /* previous error handler arg.*/ /* other option flags */ int doread=1; /* read test */ int dowrite=1; /* write test */ int docompact=1; /* compact dataset test */ int doindependent=1; /* independent test */ unsigned dobig=0; /* "big" dataset tests */ /* FILENAME and filenames must have the same number of names */ const char *FILENAME[14]={ "ParaEg1", "ParaEg2", "ParaEg3", "ParaMdset", "ParaMgroup", "ParaCompact", "ParaIndividual", "ParaBig", "ParaFill", "ParaCC1", "ParaCC2", "ParaCC3", "ParaCC4", NULL}; char filenames[14][PATH_MAX]; hid_t fapl; /* file access property list */ #ifdef USE_PAUSE /* pause the process for a moment to allow debugger to attach if desired. */ /* Will pause more if greenlight file is not persent but will eventually */ /* continue. */ #include #include void pause_proc(void) { int pid; h5_stat_t statbuf; char greenlight[] = "go"; int maxloop = 10; int loops = 0; int time_int = 10; /* mpi variables */ int mpi_size, mpi_rank; int mpi_namelen; char mpi_name[MPI_MAX_PROCESSOR_NAME]; pid = getpid(); MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); MPI_Get_processor_name(mpi_name, &mpi_namelen); if (MAINPROCESS) while ((stat(greenlight, &statbuf) == -1) && loops < maxloop){ if (!loops++){ printf("Proc %d (%*s, %d): to debug, attach %d\n", mpi_rank, mpi_namelen, mpi_name, pid, pid); } printf("waiting(%ds) for file %s ...\n", time_int, greenlight); fflush(stdout); sleep(time_int); } MPI_Barrier(MPI_COMM_WORLD); } /* Use the Profile feature of MPI to call the pause_proc() */ int MPI_Init(int *argc, char ***argv) { int ret_code; ret_code=PMPI_Init(argc, argv); pause_proc(); return (ret_code); } #endif /* USE_PAUSE */ /* * Show command usage */ static void usage(void) { printf("Usage: testphdf5 [-r] [-w] [-v] [-m] [-n] " "[-o] [-f ] [-d ]\n"); printf("\t-r\t\tno read test\n"); printf("\t-w\t\tno write test\n"); printf("\t-m" "\tset number of datasets for the multiple dataset test\n"); printf("\t-n" "\tset number of groups for the multiple group test\n"); printf("\t-o\t\tno compact dataset test\n"); printf("\t-i\t\tno independent read test\n"); printf("\t-b\t\trun big dataset test\n"); printf("\t-v\tset verbose level (0-9,l,m,h)\n"); printf("\t-f \tfilename prefix\n"); printf("\t-s\t\tuse Split-file together with MPIO\n"); printf("\t-p\t\tuse combo MPI-POSIX driver\n"); printf("\t-d \tdataset dimensions\n"); printf("\t-c \tdataset chunk dimensions\n"); printf("\tDefault: do write then read with dimensions %dx%d\n", DIM0, DIM1); printf("\n"); } /* * parse the command line options */ static int parse_options(int argc, char **argv) { int mpi_size, mpi_rank; /* mpi variables */ MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); /* setup default chunk-size. Make sure sizes are > 0 */ chunkdim0 = (dim0+9)/10; chunkdim1 = (dim1+9)/10; while (--argc){ if (**(++argv) != '-'){ break; }else{ switch(*(*argv+1)){ case 'r': doread = 0; break; case 'w': dowrite = 0; break; case 'm': ndatasets = atoi((*argv+1)+1); if (ndatasets < 0){ nerrors++; return(1); } break; case 'n': ngroups = atoi((*argv+1)+1); if (ngroups < 0){ nerrors++; return(1); } break; case 'o': docompact = 0; break; case 'i': doindependent = 0; break; case 'b': dobig = 1; break; case 'v': if (*((*argv+1)+1)) ParseTestVerbosity((*argv+1)+1); else SetTestVerbosity(VERBO_MED); break; case 'f': if (--argc < 1) { nerrors++; return(1); } if (**(++argv) == '-') { nerrors++; return(1); } paraprefix = *argv; break; case 'p': /* Use the MPI-POSIX driver access */ facc_type = FACC_MPIPOSIX; break; case 's': /* Use the split-file driver with MPIO access */ /* Can use $HDF5_METAPREFIX to define the */ /* meta-file-prefix. */ facc_type = FACC_MPIO | FACC_SPLIT; break; case 'd': /* dimensizes */ if (--argc < 2){ nerrors++; return(1); } dim0 = atoi(*(++argv)); argc--; dim1 = atoi(*(++argv)); /* set default chunkdim sizes too */ chunkdim0 = (dim0+9)/10; chunkdim1 = (dim1+9)/10; break; case 'c': /* chunk dimensions */ if (--argc < 2){ nerrors++; return(1); } chunkdim0 = atoi(*(++argv)); argc--; chunkdim1 = atoi(*(++argv)); break; case 'h': /* print help message--return with nerrors set */ return(1); default: nerrors++; return(1); } } } /*while*/ /* check validity of dimension and chunk sizes */ if (dim0 <= 0 || dim1 <= 0){ printf("Illegal dim sizes (%d, %d)\n", dim0, dim1); nerrors++; return(1); } if (chunkdim0 <= 0 || chunkdim1 <= 0){ printf("Illegal chunkdim sizes (%d, %d)\n", chunkdim0, chunkdim1); nerrors++; return(1); } /* Make sure datasets can be divided into equal portions by the processes */ if ((dim0 % mpi_size) || (dim1 % mpi_size)){ if (MAINPROCESS) printf("dim0(%d) and dim1(%d) must be multiples of processes(%d)\n", dim0, dim1, mpi_size); nerrors++; return(1); } /* compose the test filenames */ { int i, n; n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */ for (i=0; i < n; i++) if (h5_fixname(FILENAME[i],fapl,filenames[i],sizeof(filenames[i])) == NULL){ printf("h5_fixname failed\n"); nerrors++; return(1); } printf("Test filenames are:\n"); for (i=0; i < n; i++) printf(" %s\n", filenames[i]); } return(0); } /* * Create the appropriate File access property list */ hid_t create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type, hbool_t use_gpfs) { hid_t ret_pl = -1; herr_t ret; /* generic return value */ int mpi_rank; /* mpi variables */ /* need the rank for error checking macros */ MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); ret_pl = H5Pcreate (H5P_FILE_ACCESS); VRFY((ret_pl >= 0), "H5P_FILE_ACCESS"); if (l_facc_type == FACC_DEFAULT) return (ret_pl); if (l_facc_type == FACC_MPIO){ /* set Parallel access with communicator */ ret = H5Pset_fapl_mpio(ret_pl, comm, info); VRFY((ret >= 0), ""); return(ret_pl); } if (l_facc_type == (FACC_MPIO | FACC_SPLIT)){ hid_t mpio_pl; mpio_pl = H5Pcreate (H5P_FILE_ACCESS); VRFY((mpio_pl >= 0), ""); /* set Parallel access with communicator */ ret = H5Pset_fapl_mpio(mpio_pl, comm, info); VRFY((ret >= 0), ""); /* setup file access template */ ret_pl = H5Pcreate (H5P_FILE_ACCESS); VRFY((ret_pl >= 0), ""); /* set Parallel access with communicator */ ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl); VRFY((ret >= 0), "H5Pset_fapl_split succeeded"); H5Pclose(mpio_pl); return(ret_pl); } if (l_facc_type == FACC_MPIPOSIX) { /* set Parallel access with communicator */ #ifdef H5_WANT_H5_V1_4_COMPAT ret = H5Pset_fapl_mpiposix(ret_pl, comm); #else /* H5_WANT_H5_V1_4_COMPAT */ ret = H5Pset_fapl_mpiposix(ret_pl, comm, use_gpfs); #endif /* H5_WANT_H5_V1_4_COMPAT */ VRFY((ret >= 0), "H5Pset_fapl_mpiposix succeeded"); return(ret_pl); } /* unknown file access types */ return (ret_pl); } /* * Check the size of a file using MPI routines */ MPI_Offset h5_mpi_get_file_size(const char *filename, MPI_Comm comm, MPI_Info info) { MPI_File fh; /* MPI file handle */ MPI_Offset size=0; /* File size to return */ if (MPI_SUCCESS != MPI_File_open(comm, (char*)filename, MPI_MODE_RDONLY, info, &fh)) goto done; if (MPI_SUCCESS != (MPI_File_get_size(fh, &size))) goto done; if (MPI_SUCCESS != MPI_File_close(&fh)) size=0; done: return(size); } int main(int argc, char **argv) { int mpi_size, mpi_rank; /* mpi variables */ H5Ptest_param_t ndsets_params, ngroups_params; H5Ptest_param_t collngroups_params; /* Un-buffer the stdout and stderr */ setbuf(stderr, NULL); setbuf(stdout, NULL); MPI_Init(&argc, &argv); MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); if (MAINPROCESS){ printf("===================================\n"); printf("PHDF5 TESTS START\n"); printf("===================================\n"); } H5open(); h5_show_hostname(); fapl = H5Pcreate (H5P_FILE_ACCESS); H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL); if (parse_options(argc, argv) != 0){ if (MAINPROCESS) usage(); goto finish; } if (facc_type == FACC_MPIPOSIX && MAINPROCESS){ printf("===================================\n" " Using MPIPOSIX driver\n" "===================================\n"); } { int Summary = 0; int CleanUp = 1; /* Initialize testing framework */ TestInit(); /* Tests are generally arranged from least to most complexity... */ AddTest("mpio_dup", test_fapl_mpio_dup, NULL, "fapl_mpio_dup", NULL); AddTest("mpiposix_dup", test_fapl_mpiposix_dup, NULL, "fapl_mpiposix_dup", NULL); ndsets_params.name = filenames[3]; ndsets_params.count = ndatasets; AddTest("ndatasets", multiple_dset_write, NULL, "multiple datasets write", &ndsets_params); ngroups_params.name = filenames[4]; ngroups_params.count = ngroups; AddTest("ngroups", multiple_group_write, NULL, "multiple groups write", &ngroups_params); AddTest("ngroups_read", multiple_group_read, NULL, "multiple groups read", &ngroups_params); AddTest("split", test_split_comm_access, NULL, "dataset using split communicators", filenames[0]); AddTest("indwrite", dataset_writeInd, NULL, "dataset independent write", filenames[0]); AddTest("collwrite", dataset_writeAll, NULL, "dataset collective write", filenames[1]); AddTest("indwriteext", extend_writeInd, NULL, "extendible dataset independent write", filenames[2]); AddTest("indwriteext2", extend_writeInd2, NULL, "extendible dataset independent write #2", filenames[2]); AddTest("collwriteext", extend_writeAll, NULL, "extendible dataset collective write", filenames[2]); AddTest("indread", dataset_readInd, NULL, "dataset independent read", filenames[0]); AddTest("collread", dataset_readAll, NULL, "dataset collective read", filenames[1]); AddTest("indreadext", extend_readInd, NULL, "extendible dataset independent read", filenames[2]); AddTest("collreadext", extend_readAll, NULL, "extendible dataset collective read", filenames[2]); AddTest("compact", compact_dataset, NULL, "compact dataset test", filenames[5]); collngroups_params.name = filenames[6]; collngroups_params.count = ngroups; AddTest("coll_ngroups", collective_group_write, NULL, "collective group and dataset write", &collngroups_params); AddTest("indngroupsread", independent_group_read, NULL, "independent group and dataset read", &collngroups_params); /* By default, do not run big dataset. */ AddTest("-bigdataset", big_dataset, NULL, "big dataset test", filenames[7]); if (dobig && sizeof(MPI_Offset)>4){ SetTest("bigdataset", ONLYTEST); } AddTest("fillvalue", dataset_fillvalue, NULL, "dataset fill value", filenames[8]); AddTest("coll. chunked 1", coll_chunk1,NULL, "simple collective chunk io",filenames[9]); AddTest("coll. chunked 2", coll_chunk2,NULL, "noncontiguous collective chunk io",filenames[10]); AddTest("coll. chunked 3", coll_chunk3,NULL, "multi-chunk collective chunk io",filenames[11]); AddTest("coll. chunked 4", coll_chunk4,NULL, "collective to independent chunk io",filenames[12]); /* Display testing information */ TestInfo(argv[0]); /* Parse command line arguments */ /* TestParseCmdLine(argc,argv,&Summary,&CleanUp); */ /* Perform requested testing */ PerformTests(); /* Display test summary, if requested */ if (Summary) TestSummary(); /* Clean up test files, if allowed */ if (CleanUp && !getenv("HDF5_NOCLEANUP")) TestCleanup(); nerrors += GetTestNumErrs(); } #if 0 MPI_BANNER("test_fapl_mpio_dup..."); test_fapl_mpio_dup(); MPI_BANNER("test_fapl_mpiposix_dup..."); test_fapl_mpiposix_dup(); if (ndatasets){ MPI_BANNER("multiple datasets write ..."); multiple_dset_write(filenames[3], ndatasets); } else{ MPI_BANNER("Multiple datasets test skipped"); } if (ngroups){ MPI_BANNER("multiple groups write ..."); multiple_group_write(filenames[4], ngroups); if (doread) { MPI_BANNER("multiple groups read ..."); multiple_group_read(filenames[4], ngroups); } } else{ MPI_BANNER("Multiple groups test skipped"); } if (dowrite){ MPI_BANNER("dataset using split communicators..."); test_split_comm_access(filenames[0]); MPI_BANNER("dataset independent write..."); dataset_writeInd(filenames[0]); MPI_BANNER("dataset collective write..."); dataset_writeAll(filenames[1]); MPI_BANNER("extendible dataset independent write..."); extend_writeInd(filenames[2]); MPI_BANNER("extendible dataset independent write #2..."); extend_writeInd2(filenames[2]); MPI_BANNER("extendible dataset collective write..."); extend_writeAll(filenames[2]); } else{ MPI_BANNER("write tests skipped"); } if (doread){ MPI_BANNER("dataset independent read..."); dataset_readInd(filenames[0]); MPI_BANNER("dataset collective read..."); dataset_readAll(filenames[1]); MPI_BANNER("extendible dataset independent read..."); extend_readInd(filenames[2]); MPI_BANNER("extendible dataset collective read..."); extend_readAll(filenames[2]); } else{ MPI_BANNER("read tests skipped"); } if (docompact){ MPI_BANNER("compact dataset test..."); compact_dataset(filenames[5]); } else { MPI_BANNER("compact dataset test skipped"); } if (doindependent){ MPI_BANNER("collective group and dataset write ..."); collective_group_write(filenames[6], ngroups); if (doread) { MPI_BANNER("independent group and dataset read ..."); independent_group_read(filenames[6], ngroups); } } else{ MPI_BANNER("Independent test skipped"); } if (dobig && sizeof(MPI_Offset)>4){ MPI_BANNER("big dataset test..."); big_dataset(filenames[7]); } else { MPI_BANNER("big dataset test skipped"); } MPI_BANNER("dataset fill value test..."); dataset_fillvalue(filenames[8]); #endif if (!(dowrite || doread || ndatasets || ngroups || docompact || doindependent || dobig )){ usage(); nerrors++; } finish: /* make sure all processes are finished before final report, cleanup * and exit. */ MPI_Barrier(MPI_COMM_WORLD); /* Gather errors from all processes */ { int temp; MPI_Reduce(&nerrors, &temp, 1, MPI_INT, MPI_MAX, 0, MPI_COMM_WORLD); if(mpi_rank==0) nerrors=temp; } if (MAINPROCESS){ /* only process 0 reports */ printf("===================================\n"); if (nerrors) printf("***PHDF5 tests detected %d errors***\n", nerrors); else printf("PHDF5 tests finished with no errors\n"); printf("===================================\n"); } if (dowrite) h5_cleanup(FILENAME, fapl); else /* h5_cleanup would have closed fapl. Now must do it explicitedly */ H5Pclose(fapl); /* close HDF5 library */ H5close(); /* MPI_Finalize must be called AFTER H5close which may use MPI calls */ MPI_Finalize(); return(nerrors); }