/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include #include #include "h5diff.h" #include "h5diff_common.h" #include "h5tools_utils.h" static int check_n_input( const char* ); static int check_p_input( const char* ); static int check_d_input( const char* ); /* * Command-line options: The user can specify short or long-named * parameters. */ static const char *s_opts = "hVrv:qn:d:p:Nc"; static struct long_options l_opts[] = { { "help", no_arg, 'h' }, { "version", no_arg, 'V' }, { "report", no_arg, 'r' }, { "verbose", optional_arg, 'v' }, { "quiet", no_arg, 'q' }, { "count", require_arg, 'n' }, { "delta", require_arg, 'd' }, { "relative", require_arg, 'p' }, { "nan", no_arg, 'N' }, { "compare", no_arg, 'c' }, { "use-system-epsilon", no_arg, 'e' }, { "follow-symlinks", no_arg, 'l' }, { "no-dangling-links", no_arg, 'x' }, { "exclude-path", require_arg, 'E' }, { NULL, 0, '\0' } }; /*------------------------------------------------------------------------- * Function: check_options * * Purpose: parse command line input * *------------------------------------------------------------------------- */ static check_options(diff_opt_t* options) { /*-------------------------------------------------------------- * check for mutually exclusive options *--------------------------------------------------------------*/ /* check between -d , -p, --use-system-epsilon. * These options are mutually exclusive. */ if ((options->d + options->p + options->use_system_epsilon) > 1) { printf("%s error: -d, -p and --use-system-epsilon options are mutually-exclusive;\n", PROGRAMNAME); printf("use no more than one.\n"); printf("Try '-h' or '--help' option for more information or see the %s entry in the 'HDF5 Reference Manual'.\n", PROGRAMNAME); h5diff_exit(EXIT_FAILURE); } } /*------------------------------------------------------------------------- * Function: parse_command_line * * Purpose: parse command line input * *------------------------------------------------------------------------- */ void parse_command_line(int argc, const char* argv[], const char** fname1, const char** fname2, const char** objname1, const char** objname2, diff_opt_t* options) { int i; int opt; struct exclude_path_list *exclude_head, *exclude_prev, *exclude_node; /* process the command-line */ memset(options, 0, sizeof (diff_opt_t)); /* assume equal contents initially */ options->contents = 1; /* NaNs are handled by default */ options->do_nans = 1; /* init for exclude-path option */ exclude_head = NULL; /* parse command line options */ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { switch ((char)opt) { default: usage(); h5diff_exit(EXIT_FAILURE); case 'h': usage(); h5diff_exit(EXIT_SUCCESS); case 'V': print_version(h5tools_getprogname()); h5diff_exit(EXIT_SUCCESS); case 'v': options->m_verbose = 1; /* This for loop is for handling style like * -v, -v1, --verbose, --verbose=1. */ for (i = 1; i < argc; i++) { /* * short opt */ if (!strcmp (argv[i], "-v")) /* no arg */ { opt_ind--; options->m_verbose_level = 0; break; } else if (!strncmp (argv[i], "-v", 2)) { options->m_verbose_level = atoi(&argv[i][2]); break; } /* * long opt */ if (!strcmp (argv[i], "--verbose")) /* no arg */ { options->m_verbose_level = 0; break; } else if ( !strncmp (argv[i], "--verbose", 9) && argv[i][9]=='=') { options->m_verbose_level = atoi(&argv[i][10]); break; } } break; case 'q': /* use quiet mode; supress the message "0 differences found" */ options->m_quiet = 1; break; case 'r': options->m_report = 1; break; case 'l': options->follow_links = 1; break; case 'x': options->no_dangle_links = 1; break; case 'E': options->exclude_path = 1; /* create linked list of excluding objects */ if( (exclude_node = (struct exclude_path_list*) malloc(sizeof(struct exclude_path_list))) == NULL) { printf("Error: lack of memory!\n"); h5diff_exit(EXIT_FAILURE); } /* init */ exclude_node->obj_path = opt_arg; exclude_node->obj_type = H5TRAV_TYPE_UNKNOWN; exclude_prev = exclude_head; if (NULL == exclude_head) { exclude_head = exclude_node; exclude_head->next = NULL; } else { while(NULL != exclude_prev->next) exclude_prev=exclude_prev->next; exclude_node->next = NULL; exclude_prev->next = exclude_node; } break; case 'd': options->d=1; if ( check_d_input( opt_arg )==-1) { printf("<-d %s> is not a valid option\n", opt_arg ); usage(); h5diff_exit(EXIT_FAILURE); } options->delta = atof( opt_arg ); /* -d 0 is the same as default */ if (options->delta == 0) options->d=0; break; case 'p': options->p=1; if ( check_p_input( opt_arg )==-1) { printf("<-p %s> is not a valid option\n", opt_arg ); usage(); h5diff_exit(EXIT_FAILURE); } options->percent = atof( opt_arg ); /* -p 0 is the same as default */ if (options->percent == 0) options->p = 0; break; case 'n': options->n=1; if ( check_n_input( opt_arg )==-1) { printf("<-n %s> is not a valid option\n", opt_arg ); usage(); h5diff_exit(EXIT_FAILURE); } options->count = atol( opt_arg ); break; case 'N': options->do_nans = 0; break; case 'c': options->m_list_not_cmp = 1; break; case 'e': options->use_system_epsilon = 1; break; } } /* check options */ check_options(options); /* if exclude-path option is used, keep the exclude path list */ if (options->exclude_path) options->exclude = exclude_head; /* check for file names to be processed */ if (argc <= opt_ind || argv[ opt_ind + 1 ] == NULL) { error_msg("missing file names\n"); usage(); h5diff_exit(EXIT_FAILURE); } *fname1 = argv[ opt_ind ]; *fname2 = argv[ opt_ind + 1 ]; *objname1 = argv[ opt_ind + 2 ]; if ( *objname1 == NULL ) { *objname2 = NULL; return; } if ( argv[ opt_ind + 3 ] != NULL) { *objname2 = argv[ opt_ind + 3 ]; } else { *objname2 = *objname1; } } /*------------------------------------------------------------------------- * Function: print_info * * Purpose: print several information messages after h5diff call * *------------------------------------------------------------------------- */ void print_info(diff_opt_t* options) { if (options->m_quiet || options->err_stat ) return; if (options->cmn_objs==0) { printf("No common objects found. Files are not comparable.\n"); if (!options->m_verbose) printf("Use -v for a list of objects.\n"); } if (options->not_cmp==1) { if ( options->m_list_not_cmp == 0 ) { printf("--------------------------------\n"); printf("Some objects are not comparable\n"); printf("--------------------------------\n"); printf("Use -c for a list of objects.\n"); } } } /*------------------------------------------------------------------------- * Function: check_n_input * * Purpose: check for valid input * * Return: 1 for ok, -1 for fail * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: May 9, 2003 * * Comments: * * Modifications: * *------------------------------------------------------------------------- */ static int check_n_input( const char *str ) { unsigned i; char c; for ( i = 0; i < strlen(str); i++) { c = str[i]; if ( i==0 ) { if ( c < 49 || c > 57 ) /* ascii values between 1 and 9 */ return -1; } else if ( c < 48 || c > 57 ) /* 0 also */ return -1; } return 1; } /*------------------------------------------------------------------------- * Function: check_p_input * * Purpose: check for a valid p option input * * Return: 1 for ok, -1 for fail * * Date: May 9, 2003 * * Comments: * * Modifications: * *------------------------------------------------------------------------- */ static int check_p_input( const char *str ) { double x; /* the atof return value on a hexadecimal input is different on some systems; we do a character check for this */ if (strlen(str)>2 && str[0]=='0' && str[1]=='x') return -1; x=atof(str); if (x<0) return -1; return 1; } /*------------------------------------------------------------------------- * Function: check_d_input * * Purpose: check for a valid d option input * * Return: 1 for ok, -1 for fail * * Date: November 11, 2007 * * Comments: * * Modifications: * *------------------------------------------------------------------------- */ static int check_d_input( const char *str ) { double x; /* the atof return value on a hexadecimal input is different on some systems; we do a character check for this */ if (strlen(str)>2 && str[0]=='0' && str[1]=='x') return -1; x=atof(str); if (x <0) return -1; return 1; } /*------------------------------------------------------------------------- * Function: usage * * Purpose: print a usage message * * Return: void * *------------------------------------------------------------------------- */ void usage(void) { printf("usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] \n"); printf(" file1 File name of the first HDF5 file\n"); printf(" file2 File name of the second HDF5 file\n"); printf(" [obj1] Name of an HDF5 object, in absolute path\n"); printf(" [obj2] Name of an HDF5 object, in absolute path\n"); printf("\n"); printf(" OPTIONS\n"); printf(" -h, --help\n"); printf(" Print a usage message and exit.\n"); printf(" -V, --version\n"); printf(" Print version number and exit.\n"); printf(" -r, --report\n"); printf(" Report mode. Print differences.\n"); printf(" -v --verbose\n"); printf(" Verbose mode. Print differences information and list of objects.\n"); printf(" -vN --verbose=N\n"); printf(" Verbose mode with level. Print differences and list of objects.\n"); printf(" Level of detail depends on value of N:\n"); printf(" 0 : Identical to '-v' or '--verbose'.\n"); printf(" 1 : All level 0 information plus one-line attribute\n"); printf(" status summary.\n"); printf(" 2 : All level 1 information plus extended attribute\n"); printf(" status report.\n"); printf(" -q, --quiet\n"); printf(" Quiet mode. Do not produce output.\n"); printf(" --follow-symlinks\n"); printf(" Follow symbolic links (soft links and external links and compare the)\n"); printf(" links' target objects.\n"); printf(" If symbolic link(s) with the same name exist in the files being\n"); printf(" compared, then determine whether the target of each link is an existing\n"); printf(" object (dataset, group, or named datatype) or the link is a dangling\n"); printf(" link (a soft or external link pointing to a target object that does\n"); printf(" not yet exist).\n"); printf(" - If both symbolic links are dangling links, they are treated as being\n"); printf(" the same; by default, h5diff returns an exit code of 0.\n"); printf(" If, however, --no-dangling-links is used with --follow-symlinks,\n"); printf(" this situation is treated as an error and h5diff returns an\n"); printf(" exit code of 2.\n"); printf(" - If only one of the two links is a dangling link,they are treated as\n"); printf(" being different and h5diff returns an exit code of 1.\n"); printf(" If, however, --no-dangling-links is used with --follow-symlinks,\n"); printf(" this situation is treated as an error and h5diff returns an\n"); printf(" exit code of 2.\n"); printf(" - If both symbolic links point to existing objects, h5diff compares the\n"); printf(" two objects.\n"); printf(" If any symbolic link specified in the call to h5diff does not exist,\n"); printf(" h5diff treats it as an error and returns an exit code of 2.\n"); printf(" --no-dangling-links\n"); printf(" Must be used with --follow-symlinks option; otherwise, h5diff shows\n"); printf(" error message and returns an exit code of 2.\n"); printf(" Check for any symbolic links (soft links or external links) that do not\n"); printf(" resolve to an existing object (dataset, group, or named datatype).\n"); printf(" If any dangling link is found, this situation is treated as an error\n"); printf(" and h5diff returns an exit code of 2.\n"); printf(" -c, --compare\n"); printf(" List objects that are not comparable\n"); printf(" -N, --nan\n"); printf(" Avoid NaNs detection\n"); printf(" -n C, --count=C\n"); printf(" Print differences up to C. C must be a positive integer.\n"); printf(" -d D, --delta=D\n"); printf(" Print difference if (|a-b| > D). D must be a positive number.\n"); printf(" Can not use with '-p' or '--use-system-epsilon'.\n"); printf(" -p R, --relative=R\n"); printf(" Print difference if (|(a-b)/b| > R). R must be a positive number.\n"); printf(" Can not use with '-d' or '--use-system-epsilon'.\n"); printf(" --use-system-epsilon\n"); printf(" Print difference if (|a-b| > EPSILON), EPSILON is system defined value.\n"); printf(" If the system epsilon is not defined,one of the following predefined\n"); printf(" values will be used:\n"); printf(" FLT_EPSILON = 1.19209E-07 for floating-point type\n"); printf(" DBL_EPSILON = 2.22045E-16 for double precision type\n"); printf(" Can not use with '-p' or '-d'.\n"); printf(" --exclude-path \"path\" \n"); printf(" Exclude the specified path to an object when comparing files or groups.\n"); printf(" If a group is excluded, all member objects will also be excluded.\n"); printf(" The specified path is excluded wherever it occurs.\n"); printf(" This flexibility enables the same option to exclude either objects that\n"); printf(" exist only in one file or common objects that are known to differ.\n"); printf("\n"); printf(" When comparing files, \"path\" is the absolute path to the excluded;\n"); printf(" object; when comparing groups, \"path\" is similar to the relative\n"); printf(" path from the group to the excluded object. This \"path\" can be\n"); printf(" taken from the first section of the output of the --verbose option.\n"); printf(" For example, if you are comparing the group /groupA in two files and\n"); printf(" you want to exclude /groupA/groupB/groupC in both files, the exclude\n"); printf(" option would read as follows:\n"); printf(" --exclude-path \"/groupB/groupC\"\n"); printf("\n"); printf(" If there are multiple paths to an object, only the specified path(s)\n"); printf(" will be excluded; the comparison will include any path not explicitly\n"); printf(" excluded.\n"); printf(" This option can be used repeatedly to exclude multiple paths.\n"); printf("\n"); printf(" Modes of output:\n"); printf(" Default mode: print the number of differences found and where they occured\n"); printf(" -r Report mode: print the above plus the differences\n"); printf(" -v Verbose mode: print the above plus a list of objects and warnings\n"); printf(" -q Quiet mode: do not print output\n"); printf("\n"); printf(" File comparison:\n"); printf(" If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as\n"); printf(" a comparison of the two files' root groups. That is, h5diff first compares\n"); printf(" the names of root group members, generates a report of root group objects\n"); printf(" that appear in only one file or in both files, and recursively compares\n"); printf(" common objects.\n"); printf("\n"); printf(" Object comparison:\n"); printf(" 1) Groups \n"); printf(" First compares the names of member objects (relative path, from the\n"); printf(" specified group) and generates a report of objects that appear in only\n"); printf(" one group or in both groups. Common objects are then compared recursively.\n"); printf(" 2) Datasets \n"); printf(" Array rank and dimensions, datatypes, and data values are compared.\n"); printf(" 3) Datatypes \n"); printf(" The comparison is based on the return value of H5Tequal.\n"); printf(" 4) Symbolic links \n"); printf(" The paths to the target objects are compared.\n"); printf(" (The option --follow-symlinks overrides the default behavior when\n"); printf(" symbolic links are compared.).\n"); printf("\n"); printf(" Exit code:\n"); printf(" 0 if no differences, 1 if differences found, 2 if error\n"); printf("\n"); printf(" Examples of use:\n"); printf(" 1) h5diff file1 file2 /g1/dset1 /g1/dset2\n"); printf(" Compares object '/g1/dset1' in file1 with '/g1/dset2' in file2\n"); printf("\n"); printf(" 2) h5diff file1 file2 /g1/dset1\n"); printf(" Compares object '/g1/dset1' in both files\n"); printf("\n"); printf(" 3) h5diff file1 file2\n"); printf(" Compares all objects in both files\n"); printf("\n"); printf(" Notes:\n"); printf(" file1 and file2 can be the same file.\n"); printf(" Use h5diff file1 file1 /g1/dset1 /g1/dset2 to compare\n"); printf(" '/g1/dset1' and '/g1/dset2' in the same file\n"); printf("\n"); } /*------------------------------------------------------------------------- * Function: h5diff_exit * * Purpose: dismiss phdiff worker processes and exit * * Return: none * * Programmer: Albert Cheng * Date: Feb 6, 2005 * * Comments: * * Modifications: * *------------------------------------------------------------------------- */ void h5diff_exit(int status) { #ifdef H5_HAVE_PARALLEL /* if in parallel mode, dismiss workers, close down MPI, then exit */ if((g_nTasks > 1) && g_Parallel) { phdiff_dismiss_workers(); MPI_Barrier(MPI_COMM_WORLD); } if(g_Parallel) MPI_Finalize(); #endif exit(status); }