/* * Copyright © 1998 NCSA * All rights reserved. * * Programmer: Robb Matzke * Thursday, July 23, 1998 * * Purpose: A library for displaying the values of a dataset in a human * readable format. */ /* Note: h5dumputil is a modification of h5tools.c */ #include #include #include #include #include #include /* * The output functions need a temporary buffer to hold a piece of the * dataset while it's being printed. This constant sets the limit on the * size of that temporary buffer in bytes. For efficiency's sake, choose the * largest value suitable for your machine (for testing use a small value). */ #if 0 #define H5DUMP_BUFSIZE (1024*1024) #else #define H5DUMP_BUFSIZE (1024) #endif #define OPT(X,S) ((X)?(X):(S)) #define MIN(X,Y) ((X)<(Y)?(X):(Y)) #define NELMTS(X) (sizeof(X)/sizeof(*X)) #define ALIGN(A,Z) ((((A)+(Z)-1)/(Z))*(Z)) extern int indent; extern int ischar; /*------------------------------------------------------------------------- * Function: h5dump_sprint * * Purpose: Prints the value pointed to by VP into the string S assuming * the data type of VP is TYPE. * * Return: void * * Programmer: Robb Matzke * Thursday, July 23, 1998 * * Modifications: * *------------------------------------------------------------------------- */ static void h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp) { size_t i, n, offset, size, dims[4], nelmts; char temp[1024], *name; hid_t memb; int nmembs, j, k, ndims; if (H5Tequal(type, H5T_NATIVE_DOUBLE)) { sprintf(temp, "%g", *((double*)vp)); } else if (H5Tequal(type, H5T_NATIVE_FLOAT)) { sprintf(temp, "%g", *((float*)vp)); } else if (H5Tequal(type, H5T_NATIVE_SHORT)) { sprintf(temp, "%d", *((short*)vp)); } else if (H5Tequal(type, H5T_NATIVE_USHORT)) { sprintf(temp, "%u", *((unsigned short*)vp)); } else if (H5Tequal(type, H5T_NATIVE_INT)) { sprintf(temp, "%d", *((int*)vp)); } else if (H5Tequal(type, H5T_NATIVE_UINT)) { sprintf(temp, "%u", *((unsigned*)vp)); } else if (H5Tequal(type, H5T_NATIVE_LONG)) { sprintf(temp, "%ld", *((long*)vp)); } else if (H5Tequal(type, H5T_NATIVE_ULONG)) { sprintf(temp, "%lu", *((unsigned long*)vp)); } else if (H5Tequal(type, H5T_NATIVE_SCHAR) || H5Tequal(type, H5T_NATIVE_UCHAR)) { switch (*((char*)vp)) { case '"': strcpy(temp, "\\\""); break; case '\\': strcpy(temp, "\\\\"); break; case '\b': strcpy(temp, "\\b"); break; case '\f': strcpy(temp, "\\f"); break; case '\n': strcpy(temp, "\\n"); break; case '\r': strcpy(temp, "\\r"); break; case '\t': strcpy(temp, "\\t"); break; default: if (isprint(*((char*)vp))) sprintf(temp, "%c", *((char*)vp)); else sprintf(temp, "\\%03o", *((unsigned char*)vp)); break; } } else if (H5T_COMPOUND==H5Tget_class(type)) { nmembs = H5Tget_nmembers(type); strcpy(temp, OPT(info->cmpd_pre, "{")); for (j=0; jcmpd_sep, ",")); /* The name */ name = H5Tget_member_name(type, j); sprintf(temp+strlen(temp), OPT(info->cmpd_name, ""), name); free(name); /* The value */ offset = H5Tget_member_offset(type, j); memb = H5Tget_member_type(type, j); size = H5Tget_size(memb); ndims = H5Tget_member_dims(type, j, dims, NULL); assert(ndims>=0 && ndims<=4); for (k=0, nelmts=1; k1) strcat(temp, OPT(info->arr_pre, "[")); for (i=0; iarr_sep, ",")); h5dump_sprint(temp+strlen(temp), info, memb, (char*)vp+offset+i*size); } if (nelmts>1) strcat(temp, OPT(info->arr_suf, "]")); H5Tclose(memb); } strcat(temp, OPT(info->cmpd_suf, "}")); } else if (H5T_STRING==H5Tget_class(type)) { for (i = 0; i < H5Tget_size(type); i++) h5dump_sprint(s+i, info, H5T_NATIVE_SCHAR, (char*)vp+i); goto done; } else { strcpy(temp, "0x"); n = H5Tget_size(type); for (i=0; ielmt_fmt, "%s"), temp); done: ; } /*------------------------------------------------------------------------- * Function: h5dump_simple * * Purpose: Print some values from a dataset with a simple data space. * This is a special case of h5dump(). * * Return: Success: 0 * * Failure: -1 * * Programmer: Robb Matzke * Thursday, July 23, 1998 * * Modifications: * *------------------------------------------------------------------------- */ static int h5dump_simple(FILE *stream, const h5dump_t *info, hid_t oid, hid_t p_type, int obj_type) { hid_t f_space; /*file data space */ int ndims; /*dimensionality */ hsize_t elmtno, i; /*counters */ /*int carry;*/ /*counter carry value */ hssize_t zero[8]; /*vector of zeros */ /* int need_prefix=1;*/ /*indices need printing */ /* Print info */ hsize_t p_min_idx[8]; /*min selected index */ hsize_t p_max_idx[8]; /*max selected index */ size_t p_type_nbytes; /*size of memory type */ hsize_t p_nelmts; /*total selected elmts */ char p_buf[256]; /*output string */ /* size_t p_column=0;*/ /*output column */ size_t p_ncolumns=80; /*default num columns */ /* char p_prefix[1024]; */ /*line prefix string */ /* Stripmine info */ hsize_t sm_size[8]; /*stripmine size */ hsize_t sm_nbytes; /*bytes per stripmine */ hsize_t sm_nelmts; /*elements per stripmine*/ unsigned char *sm_buf; /*buffer for raw data */ hid_t sm_space; /*stripmine data space */ /* Hyperslab info */ hssize_t hs_offset[8]; /*starting offset */ hsize_t hs_size[8]; /*size this pass */ hsize_t hs_nelmts; /*elements in request */ int j, row_size, ntokens; char out_buf[80], prefix[80]; /* prefix[0] = NULL; out_buf[0] = NULL; */ prefix[0] = '\0'; out_buf[0] = '\0'; if ((indent+col) > 80) indent = 0; for (j=0;jNELMTS(sm_size)) return -1; /* Assume entire data space to be printed */ for (i=0; i<(hsize_t)ndims; i++) p_min_idx[i] = 0; H5Sget_simple_extent_dims(f_space, p_max_idx, NULL); for (i=0, p_nelmts=1; i<(hsize_t)ndims; i++) { p_nelmts *= p_max_idx[i]-p_min_idx[i]; } if (0==p_nelmts) return 0; /*nothing to print*/ /* * Determine the strip mine size and allocate a buffer. The strip mine is * a hyperslab whose size is manageable. */ p_type_nbytes = H5Tget_size(p_type); for (i=ndims, sm_nbytes=p_type_nbytes; i>0; --i) { sm_size[i-1] = MIN (p_max_idx[i-1]-p_min_idx[i-1], H5DUMP_BUFSIZE/sm_nbytes); sm_nbytes *= sm_size[i-1]; assert(sm_nbytes>0); } sm_buf = malloc(sm_nbytes); sm_nelmts = sm_nbytes/p_type_nbytes; sm_space = H5Screate_simple(1, &sm_nelmts, NULL); /* Local things */ if (info->line_ncols>0) p_ncolumns = info->line_ncols; /* The stripmine loop */ memset(hs_offset, 0, sizeof hs_offset); memset(zero, 0, sizeof zero); if (ndims == 0) { /* scalar space */ if (obj_type == DATASET_DATA) { if (H5Dread(oid, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf)<0) return -1; } else { if (H5Aread(oid, p_type, sm_buf) < 0) return -1; } if (ischar) { for (j = 0; j < (int)p_type_nbytes; j++) { h5dump_sprint(p_buf, info, H5T_NATIVE_SCHAR, sm_buf+j); if ((strlen(out_buf)+strlen(p_buf)+5) > (80-strlen(prefix))) { printf("%s\"%s\" //\n", prefix, out_buf); strcpy(out_buf, p_buf); if ( j+1 == (int)p_type_nbytes ) printf("%s\"%s\"\n", prefix, out_buf); } else { strcat(out_buf, p_buf); if ( j+1 == (int)p_type_nbytes ) printf("%s\"%s\"\n", prefix, out_buf); } } } else { h5dump_sprint(p_buf, info, p_type, sm_buf); printf("%s%s\n", prefix, p_buf); } return 0 ; } row_size = 0; for (elmtno=0; elmtno (80-strlen(prefix))) { printf("%s", prefix); if (ischar) printf("\""); printf("%s", out_buf); if (ischar) printf("\" //"); printf("\n"); strcpy(out_buf, p_buf); if (row_size == (int)p_max_idx[ndims-1]) { printf("%s", prefix); if (ischar) printf("\""); printf("%s", out_buf); *out_buf = '\0'; if (ischar) printf("\""); if ((i+1) != hs_nelmts) { if (ischar) printf(" //"); else printf(","); } printf("\n"); row_size = 0; } else if (!ischar) strcat(out_buf, ", "); } else { strcat(out_buf, p_buf); if (row_size == (int)p_max_idx[ndims-1]) { printf("%s", prefix); if (ischar) printf("\""); printf("%s", out_buf); if (ischar) printf("\""); if ((i+1) != hs_nelmts) { if (ischar) printf(" //"); else printf(","); } printf("\n"); *out_buf = '\0'; row_size = 0; } else if (!ischar) strcat(out_buf, ", "); } } } /* for (i=0; ielmt_suf1, ",")); } if ((p_column + strlen(p_buf) + strlen(OPT(info->elmt_suf2, " ")) + strlen(OPT(info->line_suf, ""))) > p_ncolumns) { need_prefix = 1; } if (need_prefix) { if (p_column) { fputs(OPT(info->line_suf, ""), stream); putc('\n', stream); fputs(OPT(info->line_sep, ""), stream); } for (j=0;jelmt_suf2, " "), stream); p_column += strlen(OPT(info->elmt_suf2, " ")); } fputs(p_buf, stream); p_column += strlen(p_buf); } */ /* Calculate the next hyperslab offset */ /* for (i=ndims, carry=1; i>0 && carry; --i) { hs_offset[i-1] += hs_size[i-1]; if (hs_offset[i-1]==(hssize_t)p_max_idx[i-1]) { hs_offset[i-1] = p_min_idx[i-1]; } else { carry = 0; } } */ } /* if (p_column) { fputs(OPT(info->line_suf, ""), stream); if (ischar) putc('"',stream); putc('\n', stream); fputs(OPT(info->line_sep, ""), stream); } */ H5Sclose(sm_space); H5Sclose(f_space); return 0; } /*------------------------------------------------------------------------- * Function: h5dump_fixtype * * Purpose: Given a file data type choose a memory data type which is * appropriate for printing the data. * * Return: Success: Memory data type * * Failure: FAIL * * Programmer: Robb Matzke * Thursday, July 23, 1998 * * Modifications: * *------------------------------------------------------------------------- */ static hid_t h5dump_fixtype(hid_t f_type) { hid_t m_type=-1, f_memb; hid_t *memb=NULL; char **name=NULL; int nmembs=0, i, j, *ndims=NULL, perm[4]; size_t size, offset, *dims=NULL, nelmts; H5T_str_t strpad; size = H5Tget_size(f_type); switch (H5Tget_class(f_type)) { case H5T_INTEGER: /* * Use the smallest native integer type of the same sign as the file * such that the memory type is at least as large as the file type. * If there is no memory type large enough then use the largest * memory type available. */ if (size<=sizeof(char)) { m_type = H5Tcopy(H5T_NATIVE_SCHAR); } else if (size<=sizeof(short)) { m_type = H5Tcopy(H5T_NATIVE_SHORT); } else if (size<=sizeof(int)) { m_type = H5Tcopy(H5T_NATIVE_INT); } else if (size<=sizeof(long)) { m_type = H5Tcopy(H5T_NATIVE_LONG); } else { m_type = H5Tcopy(H5T_NATIVE_LLONG); } H5Tset_sign(m_type, H5Tget_sign(f_type)); break; case H5T_FLOAT: /* * Use the smallest native floating point type available such that * its size is at least as large as the file type. If there is not * native type large enough then use the largest native type. */ if (size<=sizeof(float)) { m_type = H5Tcopy(H5T_NATIVE_FLOAT); } else if (size<=sizeof(double)) { m_type = H5Tcopy(H5T_NATIVE_DOUBLE); } else { m_type = H5Tcopy(H5T_NATIVE_LDOUBLE); } break; case H5T_COMPOUND: /* * We have to do this in two steps. The first step scans the file * type and converts the members to native types and remembers all * their names and sizes, computing the size of the memory compound * type at the same time. Then we create the memory compound type * and add the members. */ nmembs = H5Tget_nmembers(f_type); memb = calloc(nmembs, sizeof(hid_t)); name = calloc(nmembs, sizeof(char*)); ndims = calloc(nmembs, sizeof(int)); dims = calloc(nmembs*4, sizeof(size_t)); for (i=0, size=0; i=0 && ndims[i]<=4); for (j=0, nelmts=1; j=0) H5Tclose(memb[i]); if (name[i]) free(name[i]); } free(memb); free(name); free(ndims); free(dims); } return m_type; } /*------------------------------------------------------------------------- * Function: h5dump1 * * Purpose: Print some values from a dataset DSET to the file STREAM * after converting all types to P_TYPE (which should be a * native type). If P_TYPE is a negative value then it will be * computed from the dataset type using only native types. * * Return: Success: 0 * * Failure: -1 * * Programmer: Robb Matzke * Thursday, July 23, 1998 * * Modifications: * *------------------------------------------------------------------------- */ int h5dump1 (FILE *stream, const h5dump_t *info, hid_t oid, hid_t _p_type, int obj_type) { hid_t f_space; hid_t p_type = _p_type; hid_t f_type; int status = -1; h5dump_t info_dflt; /* Use default values */ if (!stream) stream = stdout; if (!info) { memset(&info_dflt, 0, sizeof info_dflt); info = &info_dflt; } if (p_type < 0) { if (obj_type == DATASET_DATA) f_type = H5Dget_type(oid); else f_type = H5Aget_type(oid); if (f_type < 0) return status; p_type = h5dump_fixtype(f_type); H5Tclose(f_type); if (p_type < 0) return status; } /* Check the data space */ if (obj_type == DATASET_DATA) f_space = H5Dget_space(oid); else f_space = H5Aget_space(oid); if (f_space < 0) return status; if (H5Sis_simple(f_space) >= 0) status = h5dump_simple(stream, info, oid, p_type, obj_type); H5Sclose(f_space); if (p_type != _p_type) H5Tclose(p_type); return status; }