/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include #include #include #include #include "h5repack.h" /*------------------------------------------------------------------------- * Function: parse_filter * * Purpose: read filter information * * Return: a list of names, the number of names and its compression type * * can be: * GZIP, to apply the HDF5 GZIP filter (GZIP compression) * SZIP, to apply the HDF5 SZIP filter (SZIP compression) * SHUF, to apply the HDF5 shuffle filter * FLET, to apply the HDF5 checksum filter * NONE, to remove the filter * * Examples: * "GZIP 6" * "A,B:NONE" * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: September, 23, 2003 * *------------------------------------------------------------------------- */ obj_list_t* parse_filter(const char *str, int *n_objs, filter_info_t *filt, pack_opt_t *options) { unsigned i, u; char c; size_t len=strlen(str); int j, m, n, k, end_obj=-1, no_param=0; char sobj[MAX_NC_NAME]; char scomp[10]; char stype[5]; obj_list_t* obj_list=NULL; unsigned pixels_per_block; /* initialize compression info */ memset(filt,0,sizeof(filter_info_t)); /* check for the end of object list and number of objects */ for ( i=0, n=0; iall_filter=1; } n++; obj_list=malloc(n*sizeof(obj_list_t)); if (obj_list==NULL) { printf("Could not alloc object list\n"); return NULL; } *n_objs=n; /* get object list */ for ( j=0, k=0, n=0; j\n",str); exit(1); } /* get filter additional parameters */ m=0; for ( i=end_obj+1, k=0, j=0; i\n",str); exit(1); } stype[m]=c; } stype[m]='\0'; filt->cd_values[j++]=atoi(stype); i+=m; /* jump */ } else if (i==len-1) { /*no more parameters */ scomp[k+1]='\0'; no_param=1; } /*------------------------------------------------------------------------- * H5Z_FILTER_NONE *------------------------------------------------------------------------- */ if (strcmp(scomp,"NONE")==0) filt->filtn=H5Z_FILTER_NONE; /*------------------------------------------------------------------------- * H5Z_FILTER_DEFLATE *------------------------------------------------------------------------- */ else if (strcmp(scomp,"GZIP")==0) { filt->filtn=H5Z_FILTER_DEFLATE; if (no_param) { /*no more parameters, GZIP must have parameter */ if (obj_list) free(obj_list); printf("Input Error: Missing compression parameter in <%s>\n",str); exit(1); } } /*------------------------------------------------------------------------- * H5Z_FILTER_SZIP *------------------------------------------------------------------------- */ else if (strcmp(scomp,"SZIP")==0) { filt->filtn=H5Z_FILTER_SZIP; if (no_param) { /*no more parameters, SZIP must have parameter */ if (obj_list) free(obj_list); printf("Input Error: Missing compression parameter in <%s>\n",str); exit(1); } } /*------------------------------------------------------------------------- * H5Z_FILTER_SHUFFLE *------------------------------------------------------------------------- */ else if (strcmp(scomp,"SHUF")==0) { filt->filtn=H5Z_FILTER_SHUFFLE; if (m>0){ /*shuffle does not have parameter */ if (obj_list) free(obj_list); printf("Input Error: Extra parameter in SHUF <%s>\n",str); exit(1); } } /*------------------------------------------------------------------------- * H5Z_FILTER_FLETCHER32 *------------------------------------------------------------------------- */ else if (strcmp(scomp,"FLET")==0) { filt->filtn=H5Z_FILTER_FLETCHER32; if (m>0){ /*shuffle does not have parameter */ if (obj_list) free(obj_list); printf("Input Error: Extra parameter in FLET <%s>\n",str); exit(1); } } else { if (obj_list) free(obj_list); printf("Input Error: Invalid filter type in <%s>\n",str); exit(1); } } } /*i*/ /*------------------------------------------------------------------------- * check valid parameters *------------------------------------------------------------------------- */ switch (filt->filtn) { case H5Z_FILTER_DEFLATE: if (filt->cd_values[0]<0 || filt->cd_values[0]>9 ){ if (obj_list) free(obj_list); printf("Input Error: Invalid compression parameter in <%s>\n",str); exit(1); } break; case H5Z_FILTER_SZIP: pixels_per_block=filt->cd_values[0]; if ((pixels_per_block%2)==1) { if (obj_list) free(obj_list); printf("Input Error: pixels_per_block is not even in <%s>\n",str); exit(1); } if (pixels_per_block>H5_SZIP_MAX_PIXELS_PER_BLOCK) { if (obj_list) free(obj_list); printf("Input Error: pixels_per_block is too large in <%s>\n",str); exit(1); } break; }; return obj_list; } /*------------------------------------------------------------------------- * Function: get_sfilter * * Purpose: return the filter as a string name * * Return: name of filter, exit on error * *------------------------------------------------------------------------- */ const char* get_sfilter(H5Z_filter_t filtn) { if (filtn==H5Z_FILTER_NONE) return "NONE"; else if (filtn==H5Z_FILTER_DEFLATE) return "GZIP"; else if (filtn==H5Z_FILTER_SZIP) return "SZIP"; else if (filtn==H5Z_FILTER_SHUFFLE) return "SHUFFLE"; else if (filtn==H5Z_FILTER_FLETCHER32) return "FLETCHERP"; else { printf("Input error in filter type\n"); exit(1); } return NULL; } /*------------------------------------------------------------------------- * Function: parse_layout * * Purpose: read layout info * * Return: a list of names, the number of names and its chunking info for * chunked. NULL, on error * the layout type can be: * CHUNK, to apply chunking layout * CONTI, to apply continuous layout * COMPA, to apply compact layout * * Example: * "AA,B,CDE:CHUNK 10X10" * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: December 30, 2003 * *------------------------------------------------------------------------- */ obj_list_t* parse_layout(const char *str, int *n_objs, pack_info_t *pack, /* info about layout needed */ pack_opt_t *options) { obj_list_t* obj_list=NULL; unsigned i; char c; size_t len=strlen(str); int j, n, k, end_obj=-1, c_index; char sobj[MAX_NC_NAME]; char sdim[10]; char slayout[10]; /* check for the end of object list and number of objects */ for ( i=0, n=0; iall_layout=1; } n++; obj_list=malloc(n*sizeof(obj_list_t)); if (obj_list==NULL) { printf("Could not alloc object list\n"); return NULL; } *n_objs=n; /* get object list */ for ( j=0, k=0, n=0; j\n",str); exit(1); } /* get layout info */ for ( j=end_obj+1, n=0; n<=5; j++,n++) { if (n==5) { slayout[n]='\0'; /*cut string */ if (strcmp(slayout,"COMPA")==0) pack->layout=H5D_COMPACT; else if (strcmp(slayout,"CONTI")==0) pack->layout=H5D_CONTIGUOUS; else if (strcmp(slayout,"CHUNK")==0) pack->layout=H5D_CHUNKED; else { printf("Parse layout error: Not a valid layout in <%s>\n",str); } } else { c = str[j]; slayout[n]=c; } } /* j */ if ( pack->layout==H5D_CHUNKED ) { /*------------------------------------------------------------------------- * get chunk info *------------------------------------------------------------------------- */ k=0; if (j>(int)len) { if (obj_list) free(obj_list); printf("Parse layout error: <%s> Chunk dimensions missing\n",str); exit(1); } for ( i=j, c_index=0; i Not a valid character in <%s>\n", sdim,str); exit(1); } if ( c=='x' || i==len-1) { if ( c=='x') { sdim[k-1]='\0'; k=0; pack->chunk.chunk_lengths[c_index]=atoi(sdim); if (pack->chunk.chunk_lengths[c_index]==0) { if (obj_list) free(obj_list); printf("Parse layout error: <%s> Conversion to number in <%s>\n", sdim,str); exit(1); } c_index++; } else if (i==len-1) { /*no more parameters */ sdim[k]='\0'; k=0; if (strcmp(sdim,"NONE")==0) { pack->chunk.rank=-2; } else { pack->chunk.chunk_lengths[c_index]=atoi(sdim); if (pack->chunk.chunk_lengths[c_index]==0){ if (obj_list) free(obj_list); printf("Parse layout error: <%s> Conversion to number in <%s>\n", sdim,str); exit(1); } pack->chunk.rank=c_index+1; } } /*if */ } /*if c=='x' || i==len-1 */ } /*i*/ } /*H5D_CHUNKED*/ return obj_list; } /*------------------------------------------------------------------------- * Function: parse_number * * Purpose: read a number from command line argument * * Return: number, -1 for FAIL * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: September, 23, 2003 * *------------------------------------------------------------------------- */ int parse_number(char *str) { unsigned i; int n; char c; size_t len=strlen(str); for ( i=0; i