/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include "h5repack.h" #include "h5test.h" #include "h5diff.h" #include "h5tools.h" #include "h5tools_utils.h" #define GOERROR {H5_FAILED(); goto error;} /* fill value test */ #define FNAME0 "h5repack_fill.h5" #define FNAME0OUT "h5repack_fill_out.h5" /* HDF5 objects and all dataset datatypes */ #define FNAME1 "h5repack_objs.h5" #define FNAME1OUT "h5repack_objs_out.h5" /* attributes, all datatypes */ #define FNAME2 "h5repack_attr.h5" #define FNAME2OUT "h5repack_attr_out.h5" /* hard links */ #define FNAME3 "h5repack_hlink.h5" #define FNAME3OUT "h5repack_hlink_out.h5" /* layout */ #define FNAME4 "h5repack_layout.h5" #define FNAME4OUT "h5repack_layout_out.h5" /* H5D_ALLOC_TIME_EARLY */ #define FNAME5 "h5repack_early.h5" #define FNAME5OUT "h5repack_early_out.h5" #define FNAME6 "h5repack_early2.h5" #ifdef H5_HAVE_FILTER_SZIP /* SZIP filter */ #define FNAME7 "h5repack_szip.h5" #define FNAME7OUT "h5repack_szip_out.h5" #endif /* GZIP filter */ #define FNAME8 "h5repack_deflate.h5" #define FNAME8OUT "h5repack_deflate_out.h5" /* GZIP filter */ #define FNAME9 "h5repack_shuffle.h5" #define FNAME9OUT "h5repack_shuffle_out.h5" /* Fletcher filter */ #define FNAME10 "h5repack_fletcher.h5" #define FNAME10OUT "h5repack_fletcher_out.h5" /* All filters */ #define FNAME11 "h5repack_filters.h5" #define FNAME11OUT "h5repack_filters_out.h5" /* NBit filter */ #define FNAME12 "h5repack_nbit.h5" #define FNAME12OUT "h5repack_nbit_out.h5" /* Scale Offset filter */ #define FNAME13 "h5repack_soffset.h5" #define FNAME13OUT "h5repack_soffset_out.h5" /* Big file to test read by hyperslabs */ #define FNAME14 "h5repack_big.h5" #define FNAME14OUT "h5repack_big_out.h5" /* external file */ #define FNAME15 "h5repack_ext.h5" #define FNAME15OUT "h5repack_ext_out.h5" /* File w/userblock */ #define FNAME16 "h5repack_ub.h5" #define FNAME16OUT "h5repack_ub_out.h5" /* Named datatypes */ #define FNAME17 "h5repack_named_dtypes.h5" #define FNAME17OUT "h5repack_named_dtypes_out.h5" #define FNAME18 "h5repack_layout2.h5" #define FNAME18OUT "h5repack_layout2_out.h5" #define FNAME_UB "ublock.bin" /* obj and region references */ #define FNAME_REF "h5repack_refs.h5" /* obj and region references in attr of compound and vlen type */ #define FNAME_ATTR_REF "h5repack_attr_refs.h5" const char *H5REPACK_FILENAMES[] = { "h5repack_big_out", NULL }; #define H5REPACK_EXTFILE "h5repack_ext.bin" /* Name of tool */ #define PROGRAMNAME "h5repacktst" #define DIM1 40 #define DIM2 20 #define CDIM1 DIM1/2 #define CDIM2 DIM2/2 #define RANK 2 /* Size of userblock (for userblock test) */ #define USERBLOCK_SIZE 2048 /* obj and region references */ #define NAME_OBJ_DS1 "Dset1" #define NAME_OBJ_GRP "Group" #define NAME_OBJ_NDTYPE "NamedDatatype" #define NAME_OBJ_DS2 "Dset2" #define REG_REF_DS1 "Dset_REGREF" /*------------------------------------------------------------------------- * prototypes *------------------------------------------------------------------------- */ static int make_all_objects(hid_t loc_id); static int make_attributes(hid_t loc_id); static int make_hlinks(hid_t loc_id); static int make_early(void); static int make_layout(hid_t loc_id); static int make_layout2(hid_t loc_id); #ifdef H5_HAVE_FILTER_SZIP static int make_szip(hid_t loc_id); #endif /* H5_HAVE_FILTER_SZIP */ static int make_deflate(hid_t loc_id); static int make_shuffle(hid_t loc_id); static int make_fletcher32(hid_t loc_id); static int make_nbit(hid_t loc_id); static int make_scaleoffset(hid_t loc_id); static int make_all_filters(hid_t loc_id); static int make_fill(hid_t loc_id); static int make_big(hid_t loc_id); static int make_testfiles(void); static int write_dset_in(hid_t loc_id,const char* dset_name,hid_t file_id,int make_diffs ); static int write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs ); static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *dset_name,hid_t tid,void *buf ); static int make_dset(hid_t loc_id,const char *name,hid_t sid,hid_t dcpl,void *buf); static int make_attr(hid_t loc_id,int rank,hsize_t *dims,const char *attr_name,hid_t tid,void *buf); static int make_dset_reg_ref(hid_t loc_id); static int make_external(hid_t loc_id); static int make_userblock(void); static int verify_userblock( const char* filename); static int make_userblock_file(void); static int make_named_dtype(hid_t loc_id); static int make_references(hid_t loc_id); static int make_complex_attr_references(hid_t loc_id); /*------------------------------------------------------------------------- * Function: main * * Purpose: Executes h5repack tests * * Return: Success: zero * Failure: 1 * * Programmer: Pedro Vicente * January, 6, 2004 * *------------------------------------------------------------------------- */ int main (void) { pack_opt_t pack_options; diff_opt_t diff_options; hsize_t fs_size = 0; /* free space section threshold */ H5F_file_space_type_t fs_type = H5F_FILE_SPACE_DEFAULT; /* file space handling strategy */ #if defined (H5_HAVE_FILTER_SZIP) int szip_can_encode = 0; #endif h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); /* Initialize h5tools lib */ h5tools_init(); /* initialize */ HDmemset(&diff_options, 0, sizeof (diff_opt_t)); HDmemset(&pack_options, 0, sizeof (pack_opt_t)); /* run tests */ puts("Testing h5repack:"); /* make the test files */ TESTING(" generating datasets"); if (make_testfiles() < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * Format of the tests: * * 1) make a copy of the file with h5repack * 2) use the h5diff function to compare the input and output file *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * file with fill values *------------------------------------------------------------------------- */ TESTING(" copy of datasets (fill values)"); /* fs_type = 0; fs_size = 0 */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME0,FNAME0OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME0,FNAME0OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME0, FNAME0OUT,&pack_options)<=0) GOERROR; if (h5repack_cmp_pl(FNAME0,FNAME0OUT)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * file with all kinds of dataset datatypes *------------------------------------------------------------------------- */ TESTING(" copy of datasets (all datatypes)"); if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0) GOERROR; if (h5repack_cmp_pl(FNAME1,FNAME1OUT)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * file with attributes *------------------------------------------------------------------------- */ TESTING(" copy of datasets (attributes)"); if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME2,FNAME2OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME2,FNAME2OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME2, FNAME2OUT,&pack_options)<=0) GOERROR; if (h5repack_cmp_pl(FNAME2,FNAME2OUT)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * file with hardlinks *------------------------------------------------------------------------- */ TESTING(" copy of datasets (hardlinks)"); if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME3,FNAME3OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME3,FNAME3OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME3, FNAME3OUT,&pack_options)<=0) GOERROR; if (h5repack_cmp_pl(FNAME3,FNAME3OUT)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * alloc early test *------------------------------------------------------------------------- */ TESTING(" copy of allocation early file"); if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME5,FNAME5OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME5,FNAME5OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME5, FNAME5OUT, &pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * the remaining files differ in the dcpl's *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * deflate *------------------------------------------------------------------------- */ TESTING(" adding deflate filter"); #ifdef H5_HAVE_FILTER_DEFLATE /*------------------------------------------------------------------------- * test an individual object option *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0) GOERROR; if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test all objects option *------------------------------------------------------------------------- */ TESTING(" adding deflate filter to all"); #ifdef H5_HAVE_FILTER_DEFLATE if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("GZIP=1",&pack_options) < 0) GOERROR; if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * SZIP *------------------------------------------------------------------------- */ TESTING(" adding szip filter"); #if defined (H5_HAVE_FILTER_SZIP) if (h5tools_can_encode(H5Z_FILTER_SZIP) >0) { szip_can_encode = 1; } /*------------------------------------------------------------------------- * test an individual object option *------------------------------------------------------------------------- */ if (szip_can_encode) { if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset2:SZIP=8,EC",&pack_options) < 0) GOERROR; if (h5repack_addlayout("dset2:CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); } else { SKIPPED(); } #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test all objects option *------------------------------------------------------------------------- */ TESTING(" adding szip filter to all"); #if defined (H5_HAVE_FILTER_SZIP) if (szip_can_encode) { if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("SZIP=8,NN",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); } else { SKIPPED(); } #else SKIPPED(); #endif TESTING(" addding shuffle filter"); #ifdef H5_HAVE_FILTER_SHUFFLE /*------------------------------------------------------------------------- * test an individual object option *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0) GOERROR; if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test all objects option *------------------------------------------------------------------------- */ TESTING(" addding shuffle filter to all"); #ifdef H5_HAVE_FILTER_SHUFFLE /* fs_type = H5F_FILE_SPACE_ALL_PERSIST; fs_size = 1 */ if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) GOERROR; if (h5repack_addfilter("SHUF",&pack_options) < 0) GOERROR; if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" adding checksum filter"); #ifdef H5_HAVE_FILTER_FLETCHER32 /*------------------------------------------------------------------------- * test an individual object option *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset1:FLET",&pack_options) < 0) GOERROR; if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test all objects option *------------------------------------------------------------------------- */ TESTING(" adding checksum filter to all"); #ifdef H5_HAVE_FILTER_FLETCHER32 if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("FLET",&pack_options) < 0) GOERROR; if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" filter queue fletcher, shuffle, deflate, szip"); /*------------------------------------------------------------------------- * add some filters *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset1:CHUNK 20x10",&pack_options) < 0) GOERROR; #if defined (H5_HAVE_FILTER_FLETCHER32) if (h5repack_addfilter("dset1:FLET",&pack_options) < 0) GOERROR; #endif #ifdef H5_HAVE_FILTER_SHUFFLE if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0) GOERROR; #endif #if defined (H5_HAVE_FILTER_SZIP) if (szip_can_encode) { if (h5repack_addfilter("dset1:SZIP=8,NN",&pack_options) < 0) GOERROR; } #endif #ifdef H5_HAVE_FILTER_DEFLATE if (h5repack_addfilter("dset1:GZIP=1",&pack_options) < 0) GOERROR; #endif if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" adding layout chunked"); /*------------------------------------------------------------------------- * test an individual object option *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options )<= 0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * test all objects option *------------------------------------------------------------------------- */ TESTING(" adding layout chunked to all"); if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" adding layout contiguous"); /*------------------------------------------------------------------------- * test an individual object option *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset1:CONTI",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" adding layout contiguous to all"); /*------------------------------------------------------------------------- * test all objects option *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("CONTI",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; /*------------------------------------------------------------------------- * do the same test for a file with filters (chunked) *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("CONTI",&pack_options) < 0) GOERROR; if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" adding layout compact"); /*------------------------------------------------------------------------- * test an individual object option *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset1:COMPA",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" adding layout compact to all"); /*------------------------------------------------------------------------- * test all objects option *------------------------------------------------------------------------- */ /* fs_type = H5F_FILE_SPACE_ALL; fs_size = 2 */ if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) GOERROR; if (h5repack_addlayout("COMPA",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout compact to contiguous conversion"); /*------------------------------------------------------------------------- * layout compact to contiguous conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_compact:CONTI",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout compact to chunk conversion"); /*------------------------------------------------------------------------- * layout compact to chunk conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_compact:CHUNK=2x5",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout compact to compact conversion"); /*------------------------------------------------------------------------- * layout compact to compact conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_compact:COMPA",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout contiguous to compact conversion"); /*------------------------------------------------------------------------- * layout contiguous to compact conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_contiguous:COMPA",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout contiguous to chunk conversion"); /*------------------------------------------------------------------------- * layout contiguous to chunk conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_contiguous:CHUNK=3x6",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout contiguous to contiguous conversion"); /*------------------------------------------------------------------------- * layout contiguous to contiguous conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_contiguous:CONTI",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout chunked to compact conversion"); /*------------------------------------------------------------------------- * layout chunked to compact conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_chunk:COMPA",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout chunked to contiguous conversion"); /*------------------------------------------------------------------------- * layout chunked to contiguous conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_chunk:CONTI",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); TESTING(" layout chunked to chunk conversion"); /*------------------------------------------------------------------------- * layout chunked to chunked conversion *------------------------------------------------------------------------- */ if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_chunk:CHUNK=18x13",&pack_options) < 0) GOERROR; if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * the following tests assume the input files have filters * FNAME7 * FNAME8 * FNAME9 * FNAME10 * FNAME11 *------------------------------------------------------------------------- */ TESTING(" copy of szip filter"); #if defined (H5_HAVE_FILTER_SZIP) if (szip_can_encode) { /* fs_type = H5F_FILE_SPACE_AGGR_VFD; fs_size = 3 */ if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) GOERROR; if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0) GOERROR; if (h5repack_cmp_pl(FNAME7,FNAME7OUT)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); } else { SKIPPED(); } #else SKIPPED(); #endif TESTING(" removing szip filter"); #if defined (H5_HAVE_FILTER_SZIP) if (szip_can_encode) { if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_szip:NONE",&pack_options) < 0) GOERROR; if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); } else { SKIPPED(); } #else SKIPPED(); #endif TESTING(" copy of deflate filter"); #ifdef H5_HAVE_FILTER_DEFLATE if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" removing deflate filter"); #ifdef H5_HAVE_FILTER_DEFLATE if (h5repack_init (&pack_options, 0, fs_type, ++fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_deflate:NONE",&pack_options) < 0) GOERROR; if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" copy of shuffle filter"); #ifdef H5_HAVE_FILTER_SHUFFLE if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" removing shuffle filter"); #ifdef H5_HAVE_FILTER_SHUFFLE if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_shuffle:NONE",&pack_options) < 0) GOERROR; if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" copy of fletcher filter"); #ifdef H5_HAVE_FILTER_FLETCHER32 if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" removing fletcher filter"); #ifdef H5_HAVE_FILTER_FLETCHER32 if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_fletcher32:NONE",&pack_options) < 0) GOERROR; if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" copy of nbit filter"); #ifdef H5_HAVE_FILTER_NBIT if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" removing nbit filter"); #ifdef H5_HAVE_FILTER_NBIT if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_nbit:NONE",&pack_options) < 0) GOERROR; if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" adding nbit filter"); #ifdef H5_HAVE_FILTER_NBIT if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_int31:NBIT",&pack_options) < 0) GOERROR; if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" copy of scaleoffset filter"); #ifdef H5_HAVE_FILTER_SCALEOFFSET if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" removing scaleoffset filter"); #ifdef H5_HAVE_FILTER_SCALEOFFSET if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_scaleoffset:NONE",&pack_options) < 0) GOERROR; if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif TESTING(" adding scaleoffset filter"); #ifdef H5_HAVE_FILTER_SCALEOFFSET if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_none:SOFF=31,IN",&pack_options) < 0) GOERROR; if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * file with all filters * dset_all * dset_deflate * dset_szip * dset_shuffle * dset_fletcher32 *------------------------------------------------------------------------- */ TESTING(" filter conversion from deflate to szip"); #if defined (H5_HAVE_FILTER_SZIP) \ && defined (H5_HAVE_FILTER_DEFLATE) \ && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE) if (szip_can_encode) { /* fs_type = H5F_FILE_SPACE_VFD; fs_size = 4 */ if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_deflate:SZIP=8,NN",&pack_options) < 0) GOERROR; if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); } else { SKIPPED(); } #else SKIPPED(); #endif TESTING(" filter conversion from szip to deflate"); #if defined (H5_HAVE_FILTER_SZIP) \ && defined (H5_HAVE_FILTER_DEFLATE) \ && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE) if (szip_can_encode) { if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_szip:GZIP=1",&pack_options) < 0) GOERROR; if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); } else { SKIPPED(); } #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test the NONE global option *------------------------------------------------------------------------- */ TESTING(" removing all filters"); #if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) \ && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE) if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("NONE",&pack_options) < 0) GOERROR; if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test a big file *------------------------------------------------------------------------- */ TESTING(" big file"); if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME14,FNAME14OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME14,FNAME14OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME14, FNAME14OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * test external dataset *------------------------------------------------------------------------- */ TESTING(" external datasets"); if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME15,FNAME15OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME15,FNAME15OUT,NULL,NULL,&diff_options) > 0) GOERROR; if (h5repack_verify(FNAME15, FNAME15OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * test file with userblock *------------------------------------------------------------------------- */ TESTING(" file with userblock"); if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if(h5repack(FNAME16, FNAME16OUT, &pack_options) < 0) GOERROR; if(h5diff(FNAME16, FNAME16OUT, NULL, NULL, &diff_options) > 0) GOERROR; if(h5repack_verify(FNAME16, FNAME16OUT, &pack_options) <= 0) GOERROR; if(verify_userblock(FNAME16OUT) < 0) GOERROR; if(h5repack_end(&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * test --latest options *------------------------------------------------------------------------- */ TESTING(" latest file format options"); if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; pack_options.latest=1; pack_options.grp_compact=10; pack_options.grp_indexed=5; pack_options.msg_size[0] = 10; pack_options.msg_size[1] = 20; pack_options.msg_size[2] = 30; pack_options.msg_size[3] = 40; pack_options.msg_size[4] = 50; if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) > 0) GOERROR; if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * test several global filters *------------------------------------------------------------------------- */ TESTING(" several global filters"); #if defined (H5_HAVE_FILTER_DEFLATE) && defined (H5_HAVE_FILTER_SHUFFLE) if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("GZIP=1",&pack_options) < 0) GOERROR; if (h5repack_addfilter("SHUF",&pack_options) < 0) GOERROR; if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) GOERROR; if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0) GOERROR; if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0) GOERROR; if (h5repack_end (&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test file with userblock *------------------------------------------------------------------------- */ TESTING(" file with added userblock"); #ifdef H5_HAVE_FILTER_DEFLATE if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0) GOERROR; /* add the options for a user block size and user block filename */ pack_options.ublock_size = USERBLOCK_SIZE; pack_options.ublock_filename = FNAME_UB; if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0) GOERROR; if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0) GOERROR; if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) GOERROR; if(verify_userblock(FNAME8OUT) < 0) GOERROR; if(h5repack_end(&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test file with aligment *------------------------------------------------------------------------- */ TESTING(" file with aligment"); #ifdef H5_HAVE_FILTER_DEFLATE if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0) GOERROR; /* add the options for aligment */ pack_options.alignment = 1; pack_options.threshold = 1; if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0) GOERROR; if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0) GOERROR; if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) GOERROR; /* verify aligment */ { hsize_t threshold; hsize_t alignment; hid_t fapl; hid_t fid; if (( fid = H5Fopen(FNAME8OUT, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0 ) GOERROR; if ((fapl = H5Fget_access_plist(fid)) < 0) GOERROR; if ( H5Pget_alignment(fapl, &threshold, &alignment ) < 0) GOERROR; if ( threshold != 1 ) GOERROR; if ( alignment != 1 ) GOERROR; if ( H5Pclose(fapl) < 0) GOERROR; if (H5Fclose(fid) < 0) GOERROR; } if(h5repack_end(&pack_options) < 0) GOERROR; PASSED(); #else SKIPPED(); #endif /*------------------------------------------------------------------------- * test file with userblock *------------------------------------------------------------------------- */ TESTING(" file with committed datatypes"); if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0) GOERROR; if(h5repack(FNAME17, FNAME17OUT, &pack_options) < 0) GOERROR; if(h5diff(FNAME17, FNAME17OUT, NULL, NULL, &diff_options) > 0) GOERROR; if(h5repack_verify(FNAME17, FNAME17OUT, &pack_options) <= 0) GOERROR; if(h5repack_end(&pack_options) < 0) GOERROR; PASSED(); /*------------------------------------------------------------------------- * clean temporary test files *------------------------------------------------------------------------- */ { hid_t fapl; /* setup */ h5_reset(); fapl = h5_fileaccess(); h5_cleanup(H5REPACK_FILENAMES, fapl); } puts("All h5repack tests passed."); return 0; error: puts("***** H5REPACK TESTS FAILED *****"); return 1; } /*------------------------------------------------------------------------- * Function: make_testfiles * * Purpose: make a test file with all types of HDF5 objects, * datatypes and filters * *------------------------------------------------------------------------- */ static int make_testfiles(void) { hid_t fid; /*------------------------------------------------------------------------- * create a file for general copy test *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME0,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_fill(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create another file for general copy test (all datatypes) *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_all_objects(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file for attributes copy test *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_attributes(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file for hard links test *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME3,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_hlinks(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file for layouts test *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME4,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_layout(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file for layout conversion test *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME18, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if(make_layout2(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file for the H5D_ALLOC_TIME_EARLY test *------------------------------------------------------------------------- */ if (make_early() < 0) goto out; /*------------------------------------------------------------------------- * create a file with the SZIP filter *------------------------------------------------------------------------- */ #ifdef H5_HAVE_FILTER_SZIP if((fid = H5Fcreate(FNAME7,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_szip(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; #endif /* H5_HAVE_FILTER_SZIP */ /*------------------------------------------------------------------------- * create a file with the deflate filter *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME8,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_deflate(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with the shuffle filter *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME9,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_shuffle(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with the fletcher32 filter *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME10,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_fletcher32(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with all the filters *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME11,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_all_filters(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with the nbit filter *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME12,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_nbit(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with the scaleoffset filter *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME13,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_scaleoffset(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a big dataset *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME14,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_big(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with external dataset *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME15,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_external(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with userblock *------------------------------------------------------------------------- */ if(make_userblock() < 0) goto out; /*------------------------------------------------------------------------- * create a userblock file *------------------------------------------------------------------------- */ if(make_userblock_file() < 0) goto out; /*------------------------------------------------------------------------- * create a file with named datatypes *------------------------------------------------------------------------- */ if((fid = H5Fcreate(FNAME17,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_named_dtype(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create obj and region reference type datasets (bug1814) * add attribute with int type (bug1726) * add attribute with obj and region reference type (bug1726) *-------------------------------------------------------------------------*/ if((fid = H5Fcreate(FNAME_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; /* create reference type datasets */ if (make_references(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with obj and region references in attribute of compound and * vlen datatype *-------------------------------------------------------------------------*/ if((fid = H5Fcreate(FNAME_ATTR_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) return -1; if (make_complex_attr_references(fid) < 0) goto out; if(H5Fclose(fid) < 0) return -1; return 0; out: H5Fclose(fid); return -1; } /*------------------------------------------------------------------------- * Function: make_all_objects * * Purpose: make a test file with all types of HDF5 objects * *------------------------------------------------------------------------- */ static int make_all_objects(hid_t loc_id) { hid_t did=-1; hid_t gid=-1; hid_t tid=-1; hid_t rid=-1; hid_t sid=-1; hid_t gcplid=-1; hsize_t dims[1]={2}; /* compound datatype */ typedef struct s_t { int a; float b; } s_t; /*------------------------------------------------------------------------- * H5G_DATASET *------------------------------------------------------------------------- */ if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; if ((did = H5Dcreate2(loc_id, "dset_referenced", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; /*------------------------------------------------------------------------- * H5G_GROUP *------------------------------------------------------------------------- */ if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (H5Gclose(gid) < 0) goto out; /* create a group "g2" with H5P_CRT_ORDER_TRACKED set */ if ((gcplid = H5Pcreate(H5P_GROUP_CREATE)) < 0) goto out; if (H5Pset_link_creation_order(gcplid, H5P_CRT_ORDER_TRACKED) < 0) goto out; if ((gid = H5Gcreate2(loc_id, "g2", H5P_DEFAULT, gcplid, H5P_DEFAULT)) < 0) goto out; if (H5Gclose(gid) < 0) goto out; /*------------------------------------------------------------------------- * H5G_TYPE *------------------------------------------------------------------------- */ /* create a compound datatype */ if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_INT) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT) < 0) goto out; if (H5Tcommit2(loc_id, "type", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; /*------------------------------------------------------------------------- * H5G_LINK *------------------------------------------------------------------------- */ if (H5Lcreate_soft("dset", loc_id, "link", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; /*------------------------------------------------------------------------- * H5G_UDLINK *------------------------------------------------------------------------- */ /* Create an external link. Other UD links are not supported by h5repack */ if (H5Lcreate_external("file", "path", loc_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; /*------------------------------------------------------------------------- * write a series of datasetes at root *------------------------------------------------------------------------- */ if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0) goto out; if (write_dset_in(rid,"dset_referenced",loc_id,0) < 0) goto out; if (H5Gclose(rid) < 0) goto out; /* close */ if (H5Dclose(did) < 0) goto out; if (H5Sclose(sid) < 0) goto out; if (H5Tclose(tid) < 0) goto out; if (H5Pclose(gcplid) < 0) goto out; return 0; out: H5E_BEGIN_TRY { H5Dclose(did); H5Gclose(gid); H5Gclose(rid); H5Sclose(sid); H5Tclose(tid); H5Pclose(gcplid); } H5E_END_TRY; return -1; } /*------------------------------------------------------------------------- * Function: make_attributes * * Purpose: make a test file with all types of attributes * *------------------------------------------------------------------------- */ static int make_attributes(hid_t loc_id) { hid_t did=-1; hid_t gid=-1; hid_t rid=-1; hid_t sid=-1; hsize_t dims[1]={2}; /*------------------------------------------------------------------------- * H5G_DATASET *------------------------------------------------------------------------- */ if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; if ((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; /*------------------------------------------------------------------------- * H5G_GROUP *------------------------------------------------------------------------- */ if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0) goto out; /*------------------------------------------------------------------------- * write a series of attributes on the dataset, group, and root group *------------------------------------------------------------------------- */ if ( write_attr_in(did,"dset",loc_id,0) < 0) goto out; if (write_attr_in(gid,"dset",loc_id,0) < 0) goto out; if (write_attr_in(rid,"dset",loc_id,0) < 0) goto out; /* close */ if (H5Dclose(did) < 0) goto out; if (H5Gclose(gid) < 0) goto out; if (H5Gclose(rid) < 0) goto out; if (H5Sclose(sid) < 0) goto out; return 0; out: H5E_BEGIN_TRY { H5Dclose(did); H5Gclose(gid); H5Gclose(rid); H5Sclose(sid); } H5E_END_TRY; return -1; } /*------------------------------------------------------------------------- * Function: make_hlinks * * Purpose: make a test file with hard links * *------------------------------------------------------------------------- */ static int make_hlinks(hid_t loc_id) { hid_t g1id=-1; hid_t g2id=-1; hid_t g3id=-1; hsize_t dims[2]={3,2}; int buf[3][2]= {{1,1},{1,2},{2,2}}; /*------------------------------------------------------------------------- * create a dataset and some hard links to it *------------------------------------------------------------------------- */ if(write_dset(loc_id, 2, dims, "dset", H5T_NATIVE_INT, buf) < 0) return -1; if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link1 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) return -1; if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link2 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) return -1; if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link3 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) return -1; /*------------------------------------------------------------------------- * create a group and some hard links to it *------------------------------------------------------------------------- */ if((g1id = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if((g2id = H5Gcreate2(g1id, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if((g3id = H5Gcreate2(g2id, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Lcreate_hard(loc_id, "g1", g2id, "link1 to g1", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; if(H5Lcreate_hard(g1id, "g2", g3id, "link1 to g2", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; /* close */ if (H5Gclose(g1id) < 0) goto out; if (H5Gclose(g2id) < 0) goto out; if (H5Gclose(g3id) < 0) goto out; return 0; out: H5E_BEGIN_TRY { H5Gclose(g1id); H5Gclose(g2id); H5Gclose(g3id); } H5E_END_TRY; return -1; } /*------------------------------------------------------------------------- * Function: make_szip * * Purpose: make a dataset with the SZIP filter * *------------------------------------------------------------------------- */ #ifdef H5_HAVE_FILTER_SZIP static int make_szip(hid_t loc_id) { hid_t dcpl; /* dataset creation property list */ hid_t sid; /* dataspace ID */ unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK; unsigned szip_pixels_per_block=8; hsize_t dims[RANK]={DIM1,DIM2}; hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; int buf[DIM1][DIM2]; int i, j, n; int szip_can_encode = 0; for (i=n=0; i 0) HDclose(fd); return -1; } /* end make_userblock() */ /*------------------------------------------------------------------------- * Function: verify_userblock * * Purpose: Verify that the userblock was copied correctly * *------------------------------------------------------------------------- */ static int verify_userblock( const char* filename) { hid_t fid = -1; hid_t fcpl = -1; int fd = -1; /* File descriptor for writing userblock */ char ub[USERBLOCK_SIZE]; /* User block data */ hsize_t ub_size = 0; /* User block size */ ssize_t nread; /* # of bytes read */ size_t u; /* Local index variable */ /* Open file with userblock */ if((fid = H5Fopen(filename, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) goto out; /* Retrieve file creation property list & userblock size */ if((fcpl = H5Fget_create_plist(fid)) < 0) goto out; if(H5Pget_userblock(fcpl, &ub_size) < 0) goto out; /* Verify userblock size is correct */ if(ub_size != USERBLOCK_SIZE) goto out; /* Close file creation property list */ if(H5Pclose(fcpl) < 0) goto out; if(H5Fclose(fid) < 0) goto out; /* Re-open HDF5 file, as "plain" file */ if((fd = HDopen(filename, O_RDONLY, 0)) < 0) goto out; /* Read userblock data */ nread = HDread(fd, ub, (size_t)USERBLOCK_SIZE); HDassert(nread == USERBLOCK_SIZE); /* Verify userblock data */ for(u = 0; u < USERBLOCK_SIZE; u++) if(ub[u] != (char)('a' + (u % 26))) goto out; /* Close file */ HDclose(fd); return 0; out: H5E_BEGIN_TRY { H5Pclose(fcpl); H5Fclose(fid); } H5E_END_TRY; if(fd > 0) HDclose(fd); return -1; } /* end verify_userblock() */ /*------------------------------------------------------------------------- * Function: make_userblock_file * * Purpose: create a file for the userblock add test * *------------------------------------------------------------------------- */ static int make_userblock_file(void) { int fd = -1; /* File descriptor for writing userblock */ char ub[USERBLOCK_SIZE]; /* User block data */ ssize_t nwritten; /* # of bytes written */ size_t u; /* Local index variable */ /* initialize userblock data */ for(u = 0; u < USERBLOCK_SIZE; u++) ub[u] = 'a' + (u % 26); /* open file */ if((fd = HDopen(FNAME_UB,O_WRONLY|O_CREAT|O_TRUNC, 0644 )) < 0) goto out; /* write userblock data */ nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE); HDassert(nwritten == USERBLOCK_SIZE); /* close file */ HDclose(fd); return 0; out: if(fd > 0) HDclose(fd); return -1; } /*------------------------------------------------------------------------- * Function: write_dset_in * * Purpose: write datasets in LOC_ID * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 12, 2003 * *------------------------------------------------------------------------- */ static int write_dset_in(hid_t loc_id, const char* dset_name, /* for saving reference to dataset*/ hid_t file_id, int make_diffs /* flag to modify data buffers */) { /* compound datatype */ typedef struct s_t { char a; double b; } s_t; typedef enum { RED, GREEN } e_t; hid_t did=-1; hid_t sid=-1; hid_t tid=-1; hid_t pid=-1; int val, i, j, k, n; float f; /* create 1D attributes with dimension [2], 2 elements */ hsize_t dims[1]={2}; hsize_t dims1r[1]={2}; char buf1[2][3]= {"ab","de"}; /* string */ char buf2[2]= {1,2}; /* bitfield, opaque */ s_t buf3[2]= {{1,2},{3,4}}; /* compound */ hobj_ref_t buf4[2]; /* reference */ e_t buf45[2]= {RED,GREEN}; /* enum */ hvl_t buf5[2]; /* vlen */ hsize_t dimarray[1]={3}; /* array dimension */ int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ int buf7[2]= {1,2}; /* integer */ float buf8[2]= {1,2}; /* float */ /* create 2D attributes with dimension [3][2], 6 elements */ hsize_t dims2[2]={3,2}; hsize_t dims2r[2]={1,1}; char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */ char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ hobj_ref_t buf42[1][1]; /* reference */ hvl_t buf52[3][2]; /* vlen */ int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ /* create 3D attributes with dimension [4][3][2], 24 elements */ hsize_t dims3[3]={4,3,2}; hsize_t dims3r[3]={1,1,1}; char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq", "rs","tu","vw","xz","AB","CD","EF","GH", "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ char buf23[4][3][2]; /* bitfield, opaque */ s_t buf33[4][3][2]; /* compound */ hobj_ref_t buf43[1][1][1]; /* reference */ hvl_t buf53[4][3][2]; /* vlen */ int buf63[24][3]; /* array */ int buf73[4][3][2]; /* integer */ float buf83[4][3][2]; /* float */ /*------------------------------------------------------------------------- * 1D *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) for (j=0; j<2; j++) { buf1[i][j]='z'; } } if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; if (write_dset(loc_id,1,dims,"string",tid,buf1) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /* create hard link */ if (H5Lcreate_hard(loc_id, "string", H5L_SAME_LOC, "string_link", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) buf2[i]=buf2[1]=0; } if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; if (write_dset(loc_id,1,dims,"bitfield",tid,buf2) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) { buf3[i].a=0; buf3[i].b=0; } } if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; if (write_dset(loc_id,1,dims,"opaque",tid,buf2) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) { buf45[i]=GREEN; } } if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; if (write_dset(loc_id,1,dims,"compound",tid,buf3) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_REFERENCE *------------------------------------------------------------------------- */ /* object references ( H5R_OBJECT ) */ buf4[0]=0; buf4[1]=0; if (dset_name) { if (H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1) < 0) goto out; if (write_dset(loc_id,1,dims1r,"refobj",H5T_STD_REF_OBJ,buf4) < 0) goto out; } /* Dataset region reference ( H5R_DATASET_REGION ) */ if (make_dset_reg_ref(loc_id) < 0) goto out; /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; if (write_dset(loc_id,1,dims,"enum",tid,buf45) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ /* Allocate and initialize VL dataset to write */ buf5[0].len = 1; buf5[0].p = malloc( 1 * sizeof(int)); ((int *)buf5[0].p)[0]=1; buf5[1].len = 2; buf5[1].p = malloc( 2 * sizeof(int)); ((int *)buf5[1].p)[0] = 2; ((int *)buf5[1].p)[1] = 3; if(make_diffs) { ((int *)buf5[0].p)[0] = 0; ((int *)buf5[1].p)[0] = 0; ((int *)buf5[1].p)[1] = 0; } if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) goto out; if ((did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf5) < 0) goto out; if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0) goto out; if (H5Dclose(did) < 0) goto out; if (H5Tclose(tid) < 0) goto out; if (H5Sclose(sid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) for (j=0; j<3; j++) { buf6[i][j]=0; } } if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) goto out; if (write_dset(loc_id, 1, dims, "array", tid, buf6) < 0) goto out; if (H5Tclose(tid) < 0) goto out; { double *dbuf; /* information to write */ size_t size; hsize_t sdims[] = {1}; hsize_t tdims[] = {H5TOOLS_MALLOCSIZE / sizeof(double) + 1}; unsigned u; /* allocate and initialize array data to write */ size = ( H5TOOLS_MALLOCSIZE / sizeof(double) + 1 ) * sizeof(double); dbuf = (double*)malloc( size ); for( u = 0; u < H5TOOLS_MALLOCSIZE / sizeof(double) + 1; u++) dbuf[u] = u; if (make_diffs) { dbuf[5] = 0; dbuf[6] = 0; } /* create a type larger than H5TOOLS_MALLOCSIZE */ if ((tid = H5Tarray_create2(H5T_NATIVE_DOUBLE, 1, tdims)) < 0) goto out; size = H5Tget_size(tid); if ((sid = H5Screate_simple(1, sdims, NULL)) < 0) goto out; if ((did = H5Dcreate2(loc_id, "arrayd", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; #if defined(WRITE_ARRAY) H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, dbuf); #endif /* close */ H5Dclose(did); H5Tclose(tid); H5Sclose(sid); HDfree( dbuf ); } /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) { buf7[i]=0; buf8[i]=0; } } if (write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0) goto out; if (write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0) goto out; /*------------------------------------------------------------------------- * 2D *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf12, 'z', sizeof buf12); } if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; if (write_dset(loc_id,2,dims2,"string2D",tid,buf12) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf22,0,sizeof buf22); } if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; if (write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; if (write_dset(loc_id,2,dims2,"opaque2D",tid,buf22) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf32,0,sizeof buf32); } if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; if (write_dset(loc_id,2,dims2,"compound2D",tid,buf32) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_REFERENCE *------------------------------------------------------------------------- */ /* Create references to dataset */ if (dset_name) { if (H5Rcreate(&buf42[0][0], file_id, dset_name, H5R_OBJECT, -1) < 0) goto out; if (write_dset(loc_id, 2, dims2r, "refobj2D", H5T_STD_REF_OBJ, buf42) < 0) goto out; } /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; if (write_dset(loc_id,2,dims2,"enum2D",tid,0) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ /* Allocate and initialize VL dataset to write */ n = 0; for(i = 0; i < 3; i++) { for(j = 0; j < 2; j++) { int l; buf52[i][j].p = malloc((i + 1) * sizeof(int)); buf52[i][j].len = i + 1; for(l = 0; l < i + 1; l++) { if(make_diffs) ((int *)buf52[i][j].p)[l] = 0; else ((int *)buf52[i][j].p)[l] = n++; } } } if ((sid = H5Screate_simple(2, dims2, NULL)) < 0) goto out; if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) goto out; if ((did = H5Dcreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf52) < 0) goto out; if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0) goto out; if (H5Dclose(did) < 0) goto out; if (H5Tclose(tid) < 0) goto out; if (H5Sclose(sid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf62,0,sizeof buf62); } if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) goto out; if (write_dset(loc_id, 2, dims2, "array2D", tid, buf62) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_INTEGER, write a fill value *------------------------------------------------------------------------- */ if(make_diffs) { HDmemset(buf72, 0, sizeof buf72); HDmemset(buf82, 0, sizeof buf82); } if ((pid = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto out; if ((sid = H5Screate_simple(2, dims2, NULL)) < 0) goto out; if ((did = H5Dcreate2(loc_id, "integer2D", H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT)) < 0) goto out; if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf72) < 0) goto out; if (H5Pclose(pid) < 0) goto out; if (H5Dclose(did) < 0) goto out; if (H5Sclose(sid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_FLOAT *------------------------------------------------------------------------- */ if (write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0) goto out; /*------------------------------------------------------------------------- * 3D *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf13,'z',sizeof buf13); } if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; if (write_dset(loc_id,3,dims3,"string3D",tid,buf13) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ n=1; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { if (make_diffs) buf23[i][j][k]=0; else buf23[i][j][k]=n++; } } } if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; if (write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; if (write_dset(loc_id,3,dims3,"opaque3D",tid,buf23) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ n=1; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { if (make_diffs) { buf33[i][j][k].a=0; buf33[i][j][k].b=0; } else { buf33[i][j][k].a=n++; buf33[i][j][k].b=n++; } } } } if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; if (write_dset(loc_id,3,dims3,"compound3D",tid,buf33) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_REFERENCE *------------------------------------------------------------------------- */ /* Create references to dataset */ if (dset_name) { if (H5Rcreate(&buf43[0][0][0], file_id, dset_name, H5R_OBJECT, -1) < 0) goto out; if (write_dset(loc_id, 3, dims3r, "refobj3D", H5T_STD_REF_OBJ, buf43) < 0) goto out; } /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; if (write_dset(loc_id,3,dims3,"enum3D",tid,0) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ /* Allocate and initialize VL dataset to write */ n = 0; for(i = 0; i < 4; i++) { for(j = 0; j < 3; j++) { for(k = 0; k < 2; k++) { int l; buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); buf53[i][j][k].len = i + 1; for(l = 0; l < i + 1; l++) { if(make_diffs) ((int *)buf53[i][j][k].p)[l] = 0; else ((int *)buf53[i][j][k].p)[l] = n++; } } } } if ((sid = H5Screate_simple(3, dims3, NULL)) < 0) goto out; if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) goto out; if ((did = H5Dcreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf53) < 0) goto out; if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0) goto out; if (H5Dclose(did) < 0) goto out; if (H5Tclose(tid) < 0) goto out; if (H5Sclose(sid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ n = 1; for(i = 0; i < 24; i++) { for(j = 0; j < (int)dimarray[0]; j++) { if(make_diffs) buf63[i][j] = 0; else buf63[i][j] = n++; } } if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) goto out; if (write_dset(loc_id, 3, dims3, "array3D", tid, buf63) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ n=1; f=1; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { if (make_diffs) { buf73[i][j][k]=0; buf83[i][j][k]=0; } else { buf73[i][j][k]=n++; buf83[i][j][k]=f++; } } } } if (write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0) goto out; if (write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0) goto out; return 0; out: H5E_BEGIN_TRY { H5Pclose(pid); H5Sclose(sid); H5Dclose(did); H5Tclose(tid); } H5E_END_TRY; return -1; } /*------------------------------------------------------------------------- * Function: make_dset_reg_ref * * Purpose: write dataset region references * *------------------------------------------------------------------------- */ #define SPACE1_RANK 1 #define SPACE1_DIM1 1 #define SPACE2_RANK 2 #define SPACE2_DIM1 10 #define SPACE2_DIM2 10 static int make_dset_reg_ref(hid_t loc_id) { hid_t did1=-1; /* Dataset ID */ hid_t did2=-1; /* Dereferenced dataset ID */ hid_t sid1=-1; /* Dataspace ID #1 */ hid_t sid2=-1; /* Dataspace ID #2 */ hsize_t dims1[] = {SPACE1_DIM1}; hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2}; hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */ hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */ hdset_reg_ref_t *wbuf=NULL; /* buffer to write to disk */ int *dwbuf=NULL; /* Buffer for writing numeric data to disk */ int i; /* counting variables */ int retval = -1; /* return value */ /* Allocate write & read buffers */ wbuf = (hdset_reg_ref_t *)calloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1); dwbuf = (int *)malloc(sizeof(int) * SPACE2_DIM1 * SPACE2_DIM2); /* Create dataspace for datasets */ if ((sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL)) < 0) goto out; /* Create a dataset */ if ((did2 = H5Dcreate2(loc_id, "dsetreg", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; for (i = 0; i < SPACE2_DIM1 * SPACE2_DIM2; i++) dwbuf[i] = i * 3; /* Write selection to disk */ if (H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf) < 0) goto out; /* Create dataspace for the reference dataset */ if ((sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL)) < 0) goto out; /* Create a dataset */ if ((did1 = H5Dcreate2(loc_id, "refreg", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; /* Select 6x6 hyperslab for first reference */ start[0] = 2; start[1] = 2; stride[0] = 1; stride[1] = 1; count[0] = 6; count[1] = 6; block[0] = 1; block[1] = 1; if (H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block) < 0) goto out; /* Store dataset region */ if (H5Rcreate(&wbuf[0], loc_id, "dsetreg", H5R_DATASET_REGION, sid2) < 0) goto out; /* Write selection to disk */ if (H5Dwrite(did1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf) < 0) goto out; /* Close all objects */ if (H5Sclose(sid1) < 0) goto out; if (H5Dclose(did1) < 0) goto out; if (H5Sclose(sid2) < 0) goto out; if (H5Dclose(did2) < 0) goto out; retval = 0; out: if(wbuf) HDfree(wbuf); if(dwbuf) HDfree(dwbuf); H5E_BEGIN_TRY { H5Sclose(sid1); H5Sclose(sid2); H5Dclose(did1); H5Dclose(did2); } H5E_END_TRY; return retval; } /*------------------------------------------------------------------------- * Function: write_attr_in * * Purpose: write attributes in LOC_ID (dataset, group, named datatype) * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 12, 2003 * *------------------------------------------------------------------------- */ static int write_attr_in(hid_t loc_id, const char* dset_name, /* for saving reference to dataset*/ hid_t fid, /* for reference create */ int make_diffs /* flag to modify data buffers */) { /* Compound datatype */ typedef struct s_t { char a; double b; } s_t; typedef enum { RED, GREEN } e_t; hid_t aid = -1; hid_t sid = -1; hid_t tid = -1; int val, i, j, k, n; float f; /* create 1D attributes with dimension [2], 2 elements */ hsize_t dims[1]={2}; char buf1[2][3]= {"ab","de"}; /* string */ char buf2[2]= {1,2}; /* bitfield, opaque */ s_t buf3[2]= {{1,2},{3,4}}; /* compound */ hobj_ref_t buf4[2]; /* reference */ e_t buf45[2]= {RED,RED}; /* enum */ hvl_t buf5[2]; /* vlen */ hsize_t dimarray[1]={3}; /* array dimension */ int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ int buf7[2]= {1,2}; /* integer */ float buf8[2]= {1,2}; /* float */ /* create 2D attributes with dimension [3][2], 6 elements */ hsize_t dims2[2]={3,2}; char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */ char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ hobj_ref_t buf42[3][2]; /* reference */ e_t buf452[3][2]; /* enum */ hvl_t buf52[3][2]; /* vlen */ int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ /* create 3D attributes with dimension [4][3][2], 24 elements */ hsize_t dims3[3]={4,3,2}; char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq", "rs","tu","vw","xz","AB","CD","EF","GH", "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ char buf23[4][3][2]; /* bitfield, opaque */ s_t buf33[4][3][2]; /* compound */ hobj_ref_t buf43[4][3][2]; /* reference */ e_t buf453[4][3][2]; /* enum */ hvl_t buf53[4][3][2]; /* vlen */ int buf63[24][3]; /* array */ int buf73[4][3][2]; /* integer */ float buf83[4][3][2]; /* float */ /*------------------------------------------------------------------------- * 1D attributes *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) for (j=0; j<2; j++) { buf1[i][j]='z'; } } /* buf1[2][2]= {"ab","de"}; $h5diff file7.h5 file6.h5 g1 g1 -v Group: and Attribute: and position string of string of difference ------------------------------------------------------------ [ 0 ] a z [ 0 ] b z [ 1 ] d z [ 1 ] e z */ if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; if (make_attr(loc_id,1,dims,"string",tid,buf1) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) buf2[i]=buf2[1]=0; } /* buf2[2]= {1,2}; $h5diff file7.h5 file6.h5 g1 g1 -v Group: and Attribute: and position bitfield of bitfield of difference position opaque of opaque of difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 */ if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; if (make_attr(loc_id,1,dims,"bitfield",tid,buf2) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ /* buf2[2]= {1,2}; $h5diff file7.h5 file6.h5 g1 g1 -v Group: and Attribute: and position opaque of opaque of difference position opaque of opaque of difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 */ if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; if (make_attr(loc_id,1,dims,"opaque",tid,buf2) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) { buf3[i].a=0; buf3[i].b=0; } } /* buf3[2]= {{1,2},{3,4}}; $h5diff file7.h5 file6.h5 g1 g1 -v Group: and Attribute: and position compound of compound of difference ------------------------------------------------------------ [ 0 ] 1 5 4 [ 0 ] 2 5 3 [ 1 ] 3 5 2 [ 1 ] 4 5 1 */ if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; if (make_attr(loc_id,1,dims,"compound",tid,buf3) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_REFERENCE *------------------------------------------------------------------------- */ /* object references ( H5R_OBJECT */ if (dset_name) { if (H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,-1) < 0) goto out; if (H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1) < 0) goto out; if (make_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4) < 0) goto out; } /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) { buf45[i]=GREEN; } } /* buf45[2]= {RED,RED}; $h5diff file7.h5 file6.h5 g1 g1 -v Group: and Attribute: and position enum of enum of difference ------------------------------------------------------------ [ 0 ] RED GREEN [ 1 ] RED GREEN */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; if (make_attr(loc_id,1,dims,"enum",tid,buf45) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ /* Allocate and initialize VL dataset to write */ buf5[0].len = 1; buf5[0].p = malloc( 1 * sizeof(int)); ((int *)buf5[0].p)[0]=1; buf5[1].len = 2; buf5[1].p = malloc(2 * sizeof(int)); ((int *)buf5[1].p)[0] = 2; ((int *)buf5[1].p)[1] = 3; if(make_diffs) { ((int *)buf5[0].p)[0] = 0; ((int *)buf5[1].p)[0] = 0; ((int *)buf5[1].p)[1] = 0; } /* $h5diff file7.h5 file6.h5 g1 g1 -v Group: and position vlen of vlen of difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 [ 1 ] 3 0 3 */ if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) goto out; if ((aid = H5Acreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (H5Awrite(aid, tid, buf5) < 0) goto out; if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0) goto out; if (H5Aclose(aid) < 0) goto out; aid = -1; if (H5Tclose(tid) < 0) goto out; tid = -1; if (H5Sclose(sid) < 0) goto out; sid = -1; /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ if (make_diffs) { for (i=0; i<2; i++) for (j=0; j<3; j++) { buf6[i][j]=0; } } /* buf6[2][3]= {{1,2,3},{4,5,6}}; $h5diff file7.h5 file6.h5 g1 g1 -v Group: and Attribute: and position array of array of difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 0 ] 2 0 2 [ 0 ] 3 0 3 [ 1 ] 4 0 4 [ 1 ] 5 0 5 [ 1 ] 6 0 6 */ if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) goto out; if (make_attr(loc_id, 1, dims, "array", tid, buf6) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ if(make_diffs) { for(i = 0; i < 2; i++) { buf7[i]=0; buf8[i]=0; } } /* buf7[2]= {1,2}; buf8[2]= {1,2}; $h5diff file7.h5 file6.h5 g1 g1 -v Group: and position integer of integer of difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 position float of float of difference ------------------------------------------------------------ [ 0 ] 1 0 1 [ 1 ] 2 0 2 */ if (make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0) goto out; if (make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0) goto out; /*------------------------------------------------------------------------- * 2D attributes *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf12, 'z', sizeof buf12); } /* buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; $h5diff file7.h5 file6.h5 g1 g1 -v Attribute: and position string2D of string2D of difference ------------------------------------------------------------ [ 0 0 ] a z [ 0 0 ] b z [ 0 1 ] c z [ 0 1 ] d z [ 1 0 ] e z [ 1 0 ] f z [ 1 1 ] g z [ 1 1 ] h z [ 2 0 ] i z [ 2 0 ] j z [ 2 1 ] k z [ 2 1 ] l z */ if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; if (make_attr(loc_id,2,dims2,"string2D",tid,buf12) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf22,0,sizeof buf22); } /* buf22[3][2]= {{1,2},{3,4},{5,6}}; $h5diff file7.h5 file6.h5 g1 g1 -v Attribute: and position bitfield2D of bitfield2D of difference ------------------------------------------------------------ [ 0 0 ] 1 0 1 [ 0 1 ] 2 0 2 [ 1 0 ] 3 0 3 [ 1 1 ] 4 0 4 [ 2 0 ] 5 0 5 [ 2 1 ] 6 0 6 */ if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; if (make_attr(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ /* buf22[3][2]= {{1,2},{3,4},{5,6}}; $h5diff file7.h5 file6.h5 g1 g1 -v Attribute: and position opaque2D of opaque2D of difference ------------------------------------------------------------ [ 0 0 ] 1 0 1 [ 0 1 ] 2 0 2 [ 1 0 ] 3 0 3 [ 1 1 ] 4 0 4 [ 2 0 ] 5 0 5 [ 2 1 ] 6 0 6 */ if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; if (make_attr(loc_id,2,dims2,"opaque2D",tid,buf22) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf32,0,sizeof buf32); } /* buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; $h5diff file7.h5 file6.h5 g1 g1 -v Attribute: and position opaque2D of opaque2D of difference ------------------------------------------------------------ [ 0 0 ] 1 0 1 [ 0 1 ] 2 0 2 [ 1 0 ] 3 0 3 [ 1 1 ] 4 0 4 [ 2 0 ] 5 0 5 [ 2 1 ] 6 0 6 */ if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; if (make_attr(loc_id,2,dims2,"compound2D",tid,buf32) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_REFERENCE *------------------------------------------------------------------------- */ /* Create references to dataset */ if (dset_name) { for (i = 0; i < 3; i++) { for (j = 0; j < 2; j++) { if (H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,-1) < 0) goto out; } } if (make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42) < 0) goto out; } /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ for (i=0; i<3; i++) { for (j=0; j<2; j++) { if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED; } } /* Attribute: and position enum2D of enum2D of difference ------------------------------------------------------------ [ 0 0 ] RED GREEN [ 0 1 ] RED GREEN [ 1 0 ] RED GREEN [ 1 1 ] RED GREEN [ 2 0 ] RED GREEN [ 2 1 ] RED GREEN */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; if (make_attr(loc_id,2,dims2,"enum2D",tid,buf452) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ /* Allocate and initialize VL dataset to write */ n=0; for (i = 0; i < 3; i++) { for (j = 0; j < 2; j++) { int l; buf52[i][j].p = malloc((i + 1) * sizeof(int)); buf52[i][j].len = i + 1; for (l = 0; l < i + 1; l++) if (make_diffs)((int *)buf52[i][j].p)[l] = 0; else ((int *)buf52[i][j].p)[l] = n++; } } /* position vlen2D of vlen2D of difference ------------------------------------------------------------ [ 0 1 ] 1 0 1 [ 1 0 ] 2 0 2 [ 1 0 ] 3 0 3 [ 1 1 ] 4 0 4 [ 1 1 ] 5 0 5 [ 2 0 ] 6 0 6 [ 2 0 ] 7 0 7 [ 2 0 ] 8 0 8 [ 2 1 ] 9 0 9 [ 2 1 ] 10 0 10 [ 2 1 ] 11 0 11 */ if ((sid = H5Screate_simple(2, dims2, NULL)) < 0) goto out; if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) goto out; if ((aid = H5Acreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (H5Awrite(aid, tid, buf52) < 0) goto out; if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0) goto out; if (H5Aclose(aid) < 0) goto out; aid = -1; if (H5Tclose(tid) < 0) goto out; tid = -1; if (H5Sclose(sid) < 0) goto out; sid = -1; /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf62,0,sizeof buf62); } /* buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; $h5diff file7.h5 file6.h5 g1 g1 -v Group: and Attribute: and position array2D of array2D of difference ------------------------------------------------------------ [ 0 0 ] 1 0 1 [ 0 0 ] 2 0 2 [ 0 0 ] 3 0 3 [ 0 1 ] 4 0 4 [ 0 1 ] 5 0 5 [ 0 1 ] 6 0 6 [ 1 0 ] 7 0 7 [ 1 0 ] 8 0 8 [ 1 0 ] 9 0 9 [ 1 1 ] 10 0 10 [ 1 1 ] 11 0 11 [ 1 1 ] 12 0 12 [ 2 0 ] 13 0 13 [ 2 0 ] 14 0 14 [ 2 0 ] 15 0 15 [ 2 1 ] 16 0 16 [ 2 1 ] 17 0 17 [ 2 1 ] 18 0 18 */ if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) goto out; if (make_attr(loc_id, 2, dims2, "array2D", tid, buf62) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ if(make_diffs) { HDmemset(buf72, 0, sizeof buf72); HDmemset(buf82, 0, sizeof buf82); } /* Attribute: and position integer2D of integer2D of difference ------------------------------------------------------------ [ 0 0 ] 1 0 1 [ 0 1 ] 2 0 2 [ 1 0 ] 3 0 3 [ 1 1 ] 4 0 4 [ 2 0 ] 5 0 5 [ 2 1 ] 6 0 6 6 differences found Attribute: and position float2D of float2D of difference ------------------------------------------------------------ [ 0 0 ] 1 0 1 [ 0 1 ] 2 0 2 [ 1 0 ] 3 0 3 [ 1 1 ] 4 0 4 [ 2 0 ] 5 0 5 [ 2 1 ] 6 0 6 */ if (make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72) < 0) goto out; if (make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0) goto out; /*------------------------------------------------------------------------- * 3D attributes *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ if (make_diffs) { HDmemset(buf13,'z',sizeof buf13); } /* buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", "rs","tu","vw","xz","AB","CD","EF","GH", "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; Attribute: and position string3D of string3D of difference ------------------------------------------------------------ [ 0 0 0 ] a z [ 0 0 0 ] b z [ 0 0 1 ] c z [ 0 0 1 ] d z [ 0 1 0 ] e z [ 0 1 0 ] f z [ 0 1 1 ] g z [ 0 1 1 ] h z [ 0 2 0 ] i z [ 0 2 0 ] j z [ 0 2 1 ] k z [ 0 2 1 ] l z [ 1 0 0 ] m z [ 1 0 0 ] n z [ 1 0 1 ] p z [ 1 0 1 ] q z [ 1 1 0 ] r z [ 1 1 0 ] s z [ 1 1 1 ] t z [ 1 1 1 ] u z [ 1 2 0 ] v z [ 1 2 0 ] w z [ 1 2 1 ] x z [ 2 0 0 ] A z [ 2 0 0 ] B z [ 2 0 1 ] C z [ 2 0 1 ] D z [ 2 1 0 ] E z [ 2 1 0 ] F z [ 2 1 1 ] G z [ 2 1 1 ] H z [ 2 2 0 ] I z [ 2 2 0 ] J z [ 2 2 1 ] K z [ 2 2 1 ] L z [ 3 0 0 ] M z [ 3 0 0 ] N z [ 3 0 1 ] P z [ 3 0 1 ] Q z [ 3 1 0 ] R z [ 3 1 0 ] S z [ 3 1 1 ] T z [ 3 1 1 ] U z [ 3 2 0 ] V z [ 3 2 0 ] W z [ 3 2 1 ] X z [ 3 2 1 ] Z z */ if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; if (make_attr(loc_id,3,dims3,"string3D",tid,buf13) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ n=1; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { if (make_diffs) buf23[i][j][k]=0; else buf23[i][j][k]=n++; } } } /* position bitfield3D of bitfield3D of difference ------------------------------------------------------------ [ 0 0 0 ] 1 0 1 [ 0 0 1 ] 2 0 2 [ 0 1 0 ] 3 0 3 [ 0 1 1 ] 4 0 4 [ 0 2 0 ] 5 0 5 [ 0 2 1 ] 6 0 6 [ 1 0 0 ] 7 0 7 [ 1 0 1 ] 8 0 8 [ 1 1 0 ] 9 0 9 [ 1 1 1 ] 10 0 10 [ 1 2 0 ] 11 0 11 [ 1 2 1 ] 12 0 12 [ 2 0 0 ] 13 0 13 [ 2 0 1 ] 14 0 14 [ 2 1 0 ] 15 0 15 [ 2 1 1 ] 16 0 16 [ 2 2 0 ] 17 0 17 [ 2 2 1 ] 18 0 18 [ 3 0 0 ] 19 0 19 [ 3 0 1 ] 20 0 20 [ 3 1 0 ] 21 0 21 [ 3 1 1 ] 22 0 22 [ 3 2 0 ] 23 0 23 [ 3 2 1 ] 24 0 24 */ if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; if (make_attr(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; if (make_attr(loc_id,3,dims3,"opaque3D",tid,buf23) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ n=1; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { if (make_diffs) { buf33[i][j][k].a=0; buf33[i][j][k].b=0; } else { buf33[i][j][k].a=n++; buf33[i][j][k].b=n++; } } } } /*position compound3D of compound3D of difference ------------------------------------------------------------ [ 0 0 0 ] 1 0 1 [ 0 0 0 ] 2 0 2 [ 0 0 1 ] 3 0 3 [ 0 0 1 ] 4 0 4 [ 0 1 0 ] 5 0 5 [ 0 1 0 ] 6 0 6 [ 0 1 1 ] 7 0 7 [ 0 1 1 ] 8 0 8 [ 0 2 0 ] 9 0 9 [ 0 2 0 ] 10 0 10 [ 0 2 1 ] 11 0 11 [ 0 2 1 ] 12 0 12 [ 1 0 0 ] 13 0 13 [ 1 0 0 ] 14 0 14 [ 1 0 1 ] 15 0 15 [ 1 0 1 ] 16 0 16 [ 1 1 0 ] 17 0 17 [ 1 1 0 ] 18 0 18 [ 1 1 1 ] 19 0 19 [ 1 1 1 ] 20 0 20 [ 1 2 0 ] 21 0 21 [ 1 2 0 ] 22 0 22 [ 1 2 1 ] 23 0 23 [ 1 2 1 ] 24 0 24 [ 2 0 0 ] 25 0 25 [ 2 0 0 ] 26 0 26 [ 2 0 1 ] 27 0 27 [ 2 0 1 ] 28 0 28 [ 2 1 0 ] 29 0 29 [ 2 1 0 ] 30 0 30 [ 2 1 1 ] 31 0 31 [ 2 1 1 ] 32 0 32 [ 2 2 0 ] 33 0 33 [ 2 2 0 ] 34 0 34 [ 2 2 1 ] 35 0 35 [ 2 2 1 ] 36 0 36 [ 3 0 0 ] 37 0 37 [ 3 0 0 ] 38 0 38 [ 3 0 1 ] 39 0 39 [ 3 0 1 ] 40 0 40 [ 3 1 0 ] 41 0 41 [ 3 1 0 ] 42 0 42 [ 3 1 1 ] 43 0 43 [ 3 1 1 ] 44 0 44 [ 3 2 0 ] 45 0 45 [ 3 2 0 ] 46 0 46 [ 3 2 1 ] 47 0 47 [ 3 2 1 ] 48 0 48 */ if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; if (make_attr(loc_id,3,dims3,"compound3D",tid,buf33) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_REFERENCE *------------------------------------------------------------------------- */ /* Create references to dataset */ if (dset_name) { for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) if (H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,-1) < 0) goto out; } } if (make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43) < 0) goto out; } /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { if (make_diffs) { buf453[i][j][k]=RED; } else { buf453[i][j][k]=GREEN; } } } } /* position enum3D of enum3D of difference ------------------------------------------------------------ [ 0 0 0 ] GREEN RED [ 0 0 1 ] GREEN RED [ 0 1 0 ] GREEN RED [ 0 1 1 ] GREEN RED [ 0 2 0 ] GREEN RED [ 0 2 1 ] GREEN RED [ 1 0 0 ] GREEN RED [ 1 0 1 ] GREEN RED [ 1 1 0 ] GREEN RED [ 1 1 1 ] GREEN RED [ 1 2 0 ] GREEN RED [ 1 2 1 ] GREEN RED [ 2 0 0 ] GREEN RED [ 2 0 1 ] GREEN RED [ 2 1 0 ] GREEN RED [ 2 1 1 ] GREEN RED [ 2 2 0 ] GREEN RED [ 2 2 1 ] GREEN RED [ 3 0 0 ] GREEN RED [ 3 0 1 ] GREEN RED [ 3 1 0 ] GREEN RED [ 3 1 1 ] GREEN RED [ 3 2 0 ] GREEN RED [ 3 2 1 ] GREEN RED */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; if (make_attr(loc_id,3,dims3,"enum3D",tid,buf453) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ /* Allocate and initialize VL dataset to write */ n=0; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { int l; buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); buf53[i][j][k].len = i + 1; for (l = 0; l < i + 1; l++) if (make_diffs) { ((int *)buf53[i][j][k].p)[l] = 0; } else ((int *)buf53[i][j][k].p)[l] = n++; } } } /* position vlen3D of vlen3D of difference ------------------------------------------------------------ [ 0 0 1 ] 1 0 1 [ 0 1 0 ] 2 0 2 [ 0 1 1 ] 3 0 3 [ 0 2 0 ] 4 0 4 [ 0 2 1 ] 5 0 5 [ 1 0 0 ] 6 0 6 [ 1 0 0 ] 7 0 7 [ 1 0 1 ] 8 0 8 [ 1 0 1 ] 9 0 9 [ 1 1 0 ] 10 0 10 etc */ if ((sid = H5Screate_simple(3, dims3, NULL)) < 0) goto out; if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) goto out; if ((aid = H5Acreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (H5Awrite(aid, tid, buf53) < 0) goto out; if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0) goto out; if (H5Aclose(aid) < 0) goto out; aid = -1; if (H5Tclose(tid) < 0) goto out; tid = -1; if (H5Sclose(sid) < 0) goto out; sid = -1; /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ n=1; for (i = 0; i < 24; i++) { for (j = 0; j < (int)dimarray[0]; j++) { if (make_diffs) buf63[i][j]=0; else buf63[i][j]=n++; } } /* position array3D of array3D of difference ------------------------------------------------------------ [ 0 0 0 ] 1 0 1 [ 0 0 0 ] 2 0 2 [ 0 0 0 ] 3 0 3 [ 0 0 1 ] 4 0 4 [ 0 0 1 ] 5 0 5 [ 0 0 1 ] 6 0 6 [ 0 1 0 ] 7 0 7 etc */ if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) goto out; if (make_attr(loc_id, 3, dims3, "array3D", tid, buf63) < 0) goto out; if (H5Tclose(tid) < 0) goto out; tid = -1; /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ n = 1; f = 1; for(i = 0; i < 4; i++) { for(j = 0; j < 3; j++) { for(k = 0; k < 2; k++) { if(make_diffs) { buf73[i][j][k] = 0; buf83[i][j][k] = 0; } else { buf73[i][j][k] = n++; buf83[i][j][k] = f++; } } } } /* position integer3D of integer3D of difference ------------------------------------------------------------ [ 0 0 0 ] 1 0 1 [ 0 0 1 ] 2 0 2 [ 0 1 0 ] 3 0 3 [ 0 1 1 ] 4 0 4 [ 0 2 0 ] 5 0 5 [ 0 2 1 ] 6 0 6 [ 1 0 0 ] 7 0 7 [ 1 0 1 ] 8 0 8 [ 1 1 0 ] 9 0 9 [ 1 1 1 ] 10 0 10 etc */ if (make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0) goto out; if (make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0) goto out; return 0; out: H5E_BEGIN_TRY { H5Aclose(aid); H5Sclose(sid); H5Tclose(tid); } H5E_END_TRY; return -1; } /*------------------------------------------------------------------------- * Function: make_dset * * Purpose: utility function to create and write a dataset in LOC_ID * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 12, 2003 * *------------------------------------------------------------------------- */ static int make_dset(hid_t loc_id, const char *name, hid_t sid, hid_t dcpl, void *buf) { hid_t did=-1; if ((did = H5Dcreate2(loc_id, name, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) return -1; if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) goto out; if (H5Dclose(did) < 0) return -1; return 0; out: H5E_BEGIN_TRY { H5Dclose(did); } H5E_END_TRY; return -1; } /*------------------------------------------------------------------------- * Function: write_dset * * Purpose: utility function to create and write a dataset in LOC_ID * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 12, 2003 * *------------------------------------------------------------------------- */ static int write_dset( hid_t loc_id, int rank, hsize_t *dims, const char *dset_name, hid_t tid, void *buf ) { hid_t did=-1; hid_t sid=-1; if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) return -1; if ((did = H5Dcreate2(loc_id, dset_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (buf) { if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) goto out; } if (H5Dclose(did) < 0) goto out; if (H5Sclose(sid) < 0) goto out; return 0; out: H5E_BEGIN_TRY { H5Dclose(did); H5Sclose(sid); } H5E_END_TRY; return -1; } /*------------------------------------------------------------------------- * Function: make_attr * * Purpose: utility function to write an attribute in LOC_ID * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 12, 2003 * *------------------------------------------------------------------------- */ static int make_attr(hid_t loc_id, int rank, hsize_t *dims, const char *attr_name, hid_t tid, void *buf) { hid_t aid; hid_t sid; if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) return -1; if ((aid = H5Acreate2(loc_id, attr_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(buf) { if(H5Awrite(aid, tid, buf) < 0) goto out; } if (H5Aclose(aid) < 0) goto out; if (H5Sclose(sid) < 0) goto out; return 0; out: H5E_BEGIN_TRY { H5Aclose(aid); H5Sclose(sid); } H5E_END_TRY; return -1; } /*------------------------------------------------------------------------- * Function: make_named_dtype * * Purpose: create a file with named datatypes in various configurations * *------------------------------------------------------------------------- */ static int make_named_dtype(hid_t loc_id) { hsize_t dims[1] ={3}; hid_t did=-1; hid_t aid=-1; hid_t sid=-1; hid_t tid=-1; hid_t gid=-1; if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; /* Create a dataset with an anonymous committed datatype as the first thing * h5repack sees */ if((tid = H5Tcopy(H5T_STD_I16LE)) < 0) goto out; if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; if ((did = H5Dcreate2(loc_id, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Tclose(tid) < 0) goto out; /* Create an attribute on that dataset that uses a committed datatype in * a remote group */ if((gid = H5Gcreate2(loc_id, "M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; if((gid = H5Gcreate2(loc_id, "M/M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Gclose(gid) < 0) goto out; if((tid = H5Tcopy(H5T_STD_I16BE)) < 0) goto out; if(H5Tcommit2(loc_id, "/M/M/A", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Aclose(aid) < 0) goto out; if(H5Tclose(tid) < 0) goto out; if(H5Dclose(did) < 0) goto out; /* Create a dataset in the remote group that uses a committed datatype in * the root group */ if((tid = H5Tcopy(H5T_STD_I32LE)) < 0) goto out; if(H5Tcommit2(loc_id, "N", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; if((did = H5Dcreate2(loc_id, "M/M/B", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Tclose(tid) < 0) goto out; /* Create an attribute on the remote dataset that uses an anonymous * committed datatype */ if((tid = H5Tcopy(H5T_STD_I32BE)) < 0) goto out; if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Aclose(aid) < 0) goto out; /* Create another attribute that uses the same anonymous datatype */ if((aid = H5Acreate2(did, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Aclose(aid) < 0) goto out; if(H5Tclose(tid) < 0) goto out; if(H5Dclose(did) < 0) goto out; /* Create a dataset in the root group that uses the committed datatype in * the root group */ if((tid = H5Topen2(loc_id, "N", H5P_DEFAULT)) < 0) goto out; if((did = H5Dcreate2(loc_id, "O", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Dclose(did) < 0) goto out; /* Create 2 attributes on the committed datatype that use that datatype */ if((aid = H5Acreate2(tid, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Aclose(aid) < 0) goto out; if((aid = H5Acreate2(tid, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if(H5Aclose(aid) < 0) goto out; if(H5Tclose(tid) < 0) goto out; /* Close */ if (H5Sclose(sid) < 0) goto out; return 0; out: H5E_BEGIN_TRY { H5Tclose(tid); H5Aclose(aid); H5Sclose(sid); H5Dclose(did); H5Gclose(gid); } H5E_END_TRY; return -1; } /* end make_named_dtype() */ /*------------------------------------------------------------------------- * Function: add_attr_with_objref * * Purpose: * Create attributes with object reference to objects (dset, * group, datatype). * * Note: * this function depends on locally created objects, however can be modified * to be independent as necessary * * Programmer: Jonathan Kim (March 23, 2010) *------------------------------------------------------------------------*/ static herr_t add_attr_with_objref(hid_t file_id, hid_t obj_id) { int ret = SUCCEED; int status; /* attr obj ref */ hsize_t dim_attr_objref[1]={3}; hobj_ref_t data_attr_objref[3]; /* -------------------------------- * add attribute with obj ref type */ /* ref to dset */ status = H5Rcreate(&data_attr_objref[0],file_id,NAME_OBJ_DS1,H5R_OBJECT,-1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* ref to group */ status = H5Rcreate(&data_attr_objref[1],file_id,NAME_OBJ_GRP,H5R_OBJECT,-1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* ref to datatype */ status = H5Rcreate(&data_attr_objref[2],file_id,NAME_OBJ_NDTYPE,H5R_OBJECT,-1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* create attr with obj ref type */ status = make_attr(obj_id,1,dim_attr_objref,"Attr_OBJREF",H5T_STD_REF_OBJ,data_attr_objref); if (status < 0) { fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } out: return ret; } /*------------------------------------------------------------------------- * Function: add_attr_with_regref * * Purpose: * Create attributes with region reference to dset * * Note: * this function depends on locally created objects, however can be modified * to be independent as necessary * * Programmer: Jonathan Kim (March 23, 2010) *------------------------------------------------------------------------*/ static herr_t add_attr_with_regref(hid_t file_id, hid_t obj_id) { int ret = SUCCEED; int status; /* attr region ref */ hid_t sid_regrefed_dset=0; hsize_t dim_regrefed_dset[2]={3,6}; hsize_t coords_regrefed_dset[3][2] = {{0,1},{1,2},{2,3}}; hsize_t dim_attr_regref[1]= {1}; /* dim of */ hdset_reg_ref_t data_attr_regref[1]; /* ----------------------------------- * add attribute with region ref type */ sid_regrefed_dset = H5Screate_simple (2, dim_regrefed_dset, NULL); if (sid_regrefed_dset < 0) { fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* select elements space for reference */ status = H5Sselect_elements (sid_regrefed_dset, H5S_SELECT_SET, 3, coords_regrefed_dset[0]); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* create region reference from elements space */ status = H5Rcreate (&data_attr_regref[0], file_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_regrefed_dset); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* create attr with region ref type */ status = make_attr(obj_id,1,dim_attr_regref,"Attr_REGREF",H5T_STD_REF_DSETREG,data_attr_regref); if (status < 0) { fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } out: if (sid_regrefed_dset > 0) H5Sclose (sid_regrefed_dset); return ret; } /*------------------------------------------------------------------------- * Function: gen_refered_objs * * Purpose: * Create objects (dataset, group, datatype) to be referenced * * Note: * This function is to use along with gen_obj_ref() gen_region_ref() * * Programmer: Jonathan Kim (March 23, 2010) *------------------------------------------------------------------------*/ static herr_t gen_refered_objs(hid_t loc_id) { int status; herr_t ret = SUCCEED; /* objects (dset, group, datatype) */ hid_t sid=0, did1=0, gid=0, tid=0; hsize_t dims1[1]={3}; int data[3] = {10,20,30}; /* Dset2 */ hid_t sid2=0, did2=0; hsize_t dims2[2] = {3,16}; char data2[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"}; /*----------------------- * add short dataset * (define NAME_OBJ_DS1) */ sid = H5Screate_simple(1, dims1, NULL); if (sid < 0) { fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } did1 = H5Dcreate2 (loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (did1 < 0) { fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*-------------- * add group * (define NAME_OBJ_GRP) */ gid = H5Gcreate2 (loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (gid < 0) { fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*---------------------- * add named datatype * (define NAME_OBJ_NDTYPE) */ tid = H5Tcopy(H5T_NATIVE_INT); status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*-------------------------- * create long dataset * (define NAME_OBJ_DS2) */ sid2 = H5Screate_simple (2, dims2, NULL); if (sid2 < 0) { fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* create normal dataset which is refered */ did2 = H5Dcreate2 (loc_id, NAME_OBJ_DS2, H5T_STD_I8LE, sid2, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); if (did2 < 0) { fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* write values to dataset */ status = H5Dwrite (did2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } out: if(did1 > 0) H5Dclose(did1); if(gid > 0) H5Gclose(gid); if(tid > 0) H5Tclose(tid); if(sid > 0) H5Sclose(sid); if(did2 > 0) H5Dclose(did2); if(sid2 > 0) H5Sclose(sid2); return ret; } /*------------------------------------------------------------------------- * Function: gen_obj_ref * * Purpose: * Generate object references to objects (dataset,group and named datatype) * * Note: * copied from h5copygentest.c and upate to create named datatype * * Programmer: Jonathan Kim (March 18, 2010) *------------------------------------------------------------------------*/ static herr_t gen_obj_ref(hid_t loc_id) { int status; herr_t ret = SUCCEED; hid_t sid=0, oid=0; hsize_t dims_dset_objref[1]={3}; /* attr with int type */ hsize_t dim_attr_int[1]={2}; int data_attr_int[2] = {10,20}; /* write buffer for obj reference */ hobj_ref_t objref_buf[3]; /*--------------------------------------------------------- * create obj references to the previously created objects. * Passing -1 as reference is an object.*/ /* obj ref to dataset */ status = H5Rcreate (&objref_buf[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, -1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* obj ref to group */ status = H5Rcreate (&objref_buf[1], loc_id, NAME_OBJ_GRP, H5R_OBJECT, -1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* obj ref to named-datatype */ status = H5Rcreate (&objref_buf[2], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, -1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*--------------------------------------------------------- * create dataset contain references */ sid = H5Screate_simple (1, dims_dset_objref, NULL); if (sid < 0) { fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); if (oid < 0) { fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, objref_buf); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* add attribute with int type */ if (make_attr(oid,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0) goto out; /* add attribute with obj ref */ status = add_attr_with_objref(loc_id, oid); if (status < 0) { fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* add attribute with region ref */ status = add_attr_with_regref(loc_id, oid); if (status < 0) { fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } out: if(oid > 0) H5Dclose(oid); if(sid > 0) H5Sclose(sid); return ret; } /*------------------------------------------------------------------------- * Function: gen_region_ref * * Purpose: Generate dataset region references * * Note: * copied from h5copygentest.c * * Programmer: Jonathan Kim (March 18, 2010) *------------------------------------------------------------------------*/ static herr_t gen_region_ref(hid_t loc_id) { int status; herr_t ret = SUCCEED; /* target dataset */ hid_t sid_trg=0; hsize_t dims_trg[2] = {3,16}; /* dset with region ref type */ hid_t sid_ref=0, oid_ref=0; /* region ref to target dataset */ hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} }; hdset_reg_ref_t rr_data[2]; hsize_t start[2] = {0,0}; hsize_t stride[2] = {2,11}; hsize_t count[2] = {2,2}; hsize_t block[2] = {1,3}; hsize_t dims1[1] = {2}; /* attr with int type */ hsize_t dim_attr_int[1]={2}; int data_attr_int[2] = {10,20}; sid_trg = H5Screate_simple (2, dims_trg, NULL); if (sid_trg < 0) { fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* select elements space for reference */ status = H5Sselect_elements (sid_trg, H5S_SELECT_SET, 4, coords[0]); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* create region reference from elements space */ status = H5Rcreate (&rr_data[0], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* select hyperslab space for reference */ status = H5Sselect_hyperslab (sid_trg, H5S_SELECT_SET, start, stride, count, block); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* create region reference from hyperslab space */ status = H5Rcreate (&rr_data[1], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* Create dataspace. */ sid_ref = H5Screate_simple (1, dims1, NULL); if (sid_ref < 0) { fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* create region reference dataset */ oid_ref = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid_ref, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); if (oid_ref < 0) { fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* write data as region references */ status = H5Dwrite (oid_ref, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* add attribute with int type */ if (make_attr(oid_ref,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0) goto out; /* add attribute with obj ref */ status = add_attr_with_objref(loc_id, oid_ref); if (status < 0) { fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* add attribute with region ref */ status = add_attr_with_regref(loc_id, oid_ref); if (status < 0) { fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } out: if (oid_ref > 0) H5Dclose (oid_ref); if (sid_ref > 0) H5Sclose (sid_ref); if (sid_trg > 0) H5Sclose (sid_trg); return ret; } /*------------------------------------------------------------------------- * Function: make_references * * Purpose: create a file with obj and region references * * Programmer: Jonathan Kim (March 18, 2010) *------------------------------------------------------------------------- */ static herr_t make_references(hid_t loc_id) { herr_t ret = SUCCEED; herr_t status; /* add target objects */ status = gen_refered_objs(loc_id); if (status == FAIL) { fprintf(stderr, "Failed to generate referenced object.\n"); ret = FAIL; } /* add object reference */ status = gen_obj_ref(loc_id); if (status == FAIL) { fprintf(stderr, "Failed to generate object reference.\n"); ret = FAIL; } /* add region reference */ status = gen_region_ref(loc_id); if (status == FAIL) { fprintf(stderr, "Failed to generate region reference.\n"); ret = FAIL; } return ret; } /*------------------------------------------------------------------------- * Function: make_complex_attr_references * * Purpose: * create a file with : * 1. obj ref in attribute of compound type * 2. region ref in attribute of compound type * 3. obj ref in attribute of vlen type * 4. region ref in attribute of vlen type * * Programmer: Jonathan (March 25, 2010) *------------------------------------------------------------------------- */ /* obj dset */ #define RANK_OBJ 2 #define DIM0_OBJ 6 #define DIM1_OBJ 10 /* container dset */ #define RANK_DSET 1 #define DIM_DSET 4 /* 1. obj references in compound attr */ #define RANK_COMP_OBJREF 1 #define DIM_COMP_OBJREF 3 /* for dataset, group, datatype */ /* 2. region references in compound attr */ #define RANK_COMP_REGREF 1 #define DIM_COMP_REGREF 1 /* for element region */ /* 3. obj references in vlen attr */ #define RANK_VLEN_OBJREF 1 #define DIM_VLEN_OBJREF 3 /* for dataset, group, datatype */ #define LEN0_VLEN_OBJREF 1 /* dataset */ #define LEN1_VLEN_OBJREF 1 /* group */ #define LEN2_VLEN_OBJREF 1 /* datatype */ /* 4. region references in vlen attr */ #define RANK_VLEN_REGREF 1 #define DIM_VLEN_REGREF 1 /* for element region */ #define LEN0_VLEN_REGREF 1 /* element region */ static herr_t make_complex_attr_references(hid_t loc_id) { herr_t ret = SUCCEED; herr_t status; /* * for objects */ hid_t objgid=0, objdid=0, objtid=0, objsid=0; hsize_t obj_dims[RANK_OBJ] = {DIM0_OBJ, DIM1_OBJ}; int obj_data[DIM0_OBJ][DIM1_OBJ]= {{ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9}, {10,11,12,13,14,15,16,17,18,19}, {20,21,22,23,24,25,26,27,28,29}, {30,31,32,33,34,35,36,37,38,39}, {40,41,42,43,44,45,46,47,48,49}, {50,51,52,53,54,55,56,57,58,59}}; /* * group main */ hid_t main_gid=0; /* * dataset which the attribute will be attached to */ hsize_t main_dset_dims[RANK_DSET] = {DIM_DSET}; hid_t main_sid=0, main_did=0; /* * 1. obj references in compound attr */ hid_t comp_objref_tid=0, comp_objref_aid=0; typedef struct comp_objref_t { hobj_ref_t val_objref; int val_int; } comp_objref_t; comp_objref_t comp_objref_data[DIM_COMP_OBJREF]; hid_t comp_objref_attr_sid=0; hsize_t comp_objref_dim[RANK_COMP_OBJREF] = {DIM_COMP_OBJREF}; /* * 2. region references in compound attr */ hid_t comp_regref_tid=0, comp_regref_aid=0; typedef struct comp_regref_t { hdset_reg_ref_t val_regref; int val_int; } comp_regref_t; comp_regref_t comp_regref_data[DIM_COMP_REGREF]; hid_t comp_regref_attr_sid=0; hsize_t comp_regref_dim[RANK_COMP_REGREF] = {DIM_COMP_REGREF}; hsize_t coords[4][2] = { {0,1}, {2,3}, {3,4}, {4,5} }; /* * 3. obj references in vlen attr */ hid_t vlen_objref_attr_tid=0, vlen_objref_attr_sid=0; hid_t vlen_objref_attr_id=0; hvl_t vlen_objref_data[DIM_VLEN_OBJREF]; hsize_t vlen_objref_dims[RANK_VLEN_OBJREF] = {DIM_VLEN_OBJREF}; /* * 4. region references in vlen attr */ hid_t vlen_regref_attr_tid=0, vlen_regref_attr_sid=0; hid_t vlen_regref_attr_id=0; hvl_t vlen_regref_data[DIM_VLEN_REGREF]; hsize_t vlen_regref_dim[RANK_VLEN_REGREF] = {DIM_VLEN_REGREF}; /* --------------------------------------- * create objects which to be referenced */ /* object1 group */ objgid = H5Gcreate2(loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* object2 dataset */ objsid = H5Screate_simple(RANK_OBJ, obj_dims, NULL); objdid = H5Dcreate2(loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, objsid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(objdid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* object3 named datatype */ objtid = H5Tcopy(H5T_NATIVE_INT); status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, objtid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* --------------------------------------------- * Put testing objs in this group * create group contain dataset with attribute and the attribute has * compound type which contain obj and region reference */ main_gid = H5Gcreate2(loc_id, "group_main", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (main_gid < 0) { fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*---------------------------------------------------------- * create dataset which the attribute will be attached to */ main_sid = H5Screate_simple(RANK_DSET, main_dset_dims, NULL); main_did = H5Dcreate2(main_gid, "dset_main", H5T_NATIVE_INT, main_sid, H5P_DEFAULT,H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(main_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*------------------------------------------------------------------- * 1. create obj references in a attribute of compound type */ /* * create compound type for attribute */ comp_objref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_objref_t)); H5Tinsert(comp_objref_tid, "value_objref", HOFFSET(comp_objref_t, val_objref), H5T_STD_REF_OBJ); H5Tinsert(comp_objref_tid, "value_int", HOFFSET(comp_objref_t, val_int), H5T_NATIVE_INT); /* * Create the object references into compound type */ /* references to dataset */ status = H5Rcreate (&(comp_objref_data[0].val_objref), loc_id, NAME_OBJ_DS1, H5R_OBJECT,-1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } comp_objref_data[0].val_int = 0; /* references to group */ status = H5Rcreate (&(comp_objref_data[1].val_objref), loc_id, NAME_OBJ_GRP, H5R_OBJECT,-1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } comp_objref_data[1].val_int = 10; /* references to datatype */ status = H5Rcreate (&(comp_objref_data[2].val_objref), loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT,-1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } comp_objref_data[2].val_int = 20; /* * create attribute and write the object ref */ comp_objref_attr_sid = H5Screate_simple (RANK_COMP_OBJREF, comp_objref_dim, NULL); comp_objref_aid = H5Acreate2 (main_did, "Comp_OBJREF", comp_objref_tid, comp_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); status = H5Awrite (comp_objref_aid, comp_objref_tid, comp_objref_data); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*------------------------------------------------------------------- * 2. create region references in attribute of compound type */ /* * create compound type for attribute */ comp_regref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_regref_t)); H5Tinsert(comp_regref_tid, "value_regref", HOFFSET(comp_regref_t, val_regref), H5T_STD_REF_DSETREG); H5Tinsert(comp_regref_tid, "value_int", HOFFSET(comp_regref_t, val_int), H5T_NATIVE_INT); /* * create the region reference */ status = H5Sselect_elements (objsid, H5S_SELECT_SET, 4, coords[0]); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } status = H5Rcreate (&(comp_regref_data[0].val_regref), loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } comp_regref_data[0].val_int = 10; /* * create attribute and write the region ref */ comp_regref_attr_sid = H5Screate_simple (RANK_COMP_REGREF, comp_regref_dim, NULL); comp_regref_aid = H5Acreate2 (main_did, "Comp_REGREF", comp_regref_tid, comp_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); status = H5Awrite (comp_regref_aid, comp_regref_tid, comp_regref_data); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*------------------------------------------------------------------- * 3. create obj references in attribute of vlen type */ /* * prepare vlen data */ vlen_objref_data[0].len = LEN0_VLEN_OBJREF; vlen_objref_data[0].p = malloc (vlen_objref_data[0].len * sizeof(hobj_ref_t)); vlen_objref_data[1].len = LEN1_VLEN_OBJREF; vlen_objref_data[1].p = malloc (vlen_objref_data[1].len * sizeof(hobj_ref_t)); vlen_objref_data[2].len = LEN2_VLEN_OBJREF; vlen_objref_data[2].p = malloc (vlen_objref_data[2].len * sizeof(hobj_ref_t)); /* * create obj references */ /* reference to dataset */ status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, -1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* reference to group */ status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[1].p)[0], loc_id, NAME_OBJ_GRP, H5R_OBJECT, -1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* reference to datatype */ status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[2].p)[0], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, -1); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* * create vlen type with obj reference */ vlen_objref_attr_tid = H5Tvlen_create (H5T_STD_REF_OBJ); vlen_objref_attr_sid = H5Screate_simple (RANK_VLEN_OBJREF, vlen_objref_dims, NULL); /* * create attribute and write the object reference */ vlen_objref_attr_id = H5Acreate2(main_did, "Vlen_OBJREF", vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); status = H5Awrite (vlen_objref_attr_id, vlen_objref_attr_tid, vlen_objref_data); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* close resource for vlen data */ status = H5Dvlen_reclaim (vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, vlen_objref_data); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /*------------------------------------------------------------------- * 4. create region references in a attribute of vlen type */ /* * prepare vlen data */ vlen_regref_data[0].len = LEN0_VLEN_REGREF; vlen_regref_data[0].p = malloc (vlen_regref_data[0].len * sizeof(hdset_reg_ref_t)); /* * create region reference */ status = H5Sselect_elements(objsid, H5S_SELECT_SET, 4, coords[0]); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } status = H5Rcreate (&((hdset_reg_ref_t*)vlen_regref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* * create vlen type with region reference */ vlen_regref_attr_tid = H5Tvlen_create(H5T_STD_REF_DSETREG); vlen_regref_attr_sid = H5Screate_simple(RANK_VLEN_REGREF, vlen_regref_dim, NULL); /* * create attribute and write the region reference */ vlen_regref_attr_id = H5Acreate2(main_did, "Vlen_REGREF", vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); status = H5Awrite(vlen_regref_attr_id, vlen_regref_attr_tid, vlen_regref_data); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } /* close resource for vlen data */ status = H5Dvlen_reclaim (vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, vlen_regref_data); if (status < 0) { fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__); ret = FAIL; goto out; } out: /* release resources */ if (objgid > 0) H5Gclose(objgid); if (objsid > 0) H5Sclose(objsid); if (objdid > 0) H5Dclose(objdid); if (objtid > 0) H5Tclose(objtid); if (main_gid > 0) H5Gclose(main_gid); if (main_sid > 0) H5Sclose(main_sid); if (main_did > 0) H5Dclose(main_did); /* comp obj ref */ if (comp_objref_tid > 0) H5Tclose(comp_objref_tid); if (comp_objref_aid > 0) H5Aclose(comp_objref_aid); if (comp_objref_attr_sid > 0) H5Sclose(comp_objref_attr_sid); /* comp region ref */ if (comp_regref_tid > 0) H5Tclose(comp_regref_tid); if (comp_regref_aid > 0) H5Aclose(comp_regref_aid); if (comp_regref_attr_sid > 0) H5Sclose(comp_regref_attr_sid); /* vlen obj ref */ if (vlen_objref_attr_id > 0) H5Aclose(vlen_objref_attr_id); if (vlen_objref_attr_sid > 0) H5Sclose(vlen_objref_attr_sid); if (vlen_objref_attr_tid > 0) H5Tclose(vlen_objref_attr_tid); /* vlen region ref */ if (vlen_regref_attr_id > 0) H5Aclose(vlen_regref_attr_id); if (vlen_regref_attr_sid > 0) H5Sclose(vlen_regref_attr_sid); if (vlen_regref_attr_tid > 0) H5Tclose(vlen_regref_attr_tid); return ret; }