/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include "h5trav.h" #include "H5private.h" /*------------------------------------------------------------------------- * local typedefs *------------------------------------------------------------------------- */ typedef struct trav_addr_path_t { haddr_t addr; char *path; } trav_addr_path_t; typedef struct trav_addr_t { size_t nalloc; size_t nused; trav_addr_path_t *objs; } trav_addr_t; typedef struct { h5trav_obj_func_t visit_obj; /* Callback for visiting objects */ h5trav_lnk_func_t visit_lnk; /* Callback for visiting links */ void *udata; /* User data to pass to callbacks */ } trav_visitor_t; typedef struct { trav_addr_t *seen; /* List of addresses seen already */ const trav_visitor_t *visitor; /* Information for visiting each link/object */ hbool_t is_absolute; /* Whether the traversal has absolute paths */ const char *base_grp_name; /* Name of the group that serves as the base * for iteration */ } trav_ud_traverse_t; typedef struct { hid_t fid; /* File ID being traversed */ } trav_print_udata_t; typedef struct trav_path_op_data_t { const char *path; } trav_path_op_data_t; /* format for hsize_t */ #ifdef H5TRAV_PRINT_SPACE #define HSIZE_T_FORMAT "%" H5_PRINTF_LL_WIDTH "u" #endif /* H5TRAV_PRINT_SPACE */ /*------------------------------------------------------------------------- * local functions *------------------------------------------------------------------------- */ static void trav_table_add(trav_table_t *table, const char *objname, const H5O_info_t *oinfo); static void trav_table_addlink(trav_table_t *table, haddr_t objno, const char *path); /*------------------------------------------------------------------------- * local variables *------------------------------------------------------------------------- */ static H5_index_t trav_index_by = H5_INDEX_NAME; static H5_iter_order_t trav_index_order = H5_ITER_INC; static int trav_verbosity = 0; /*------------------------------------------------------------------------- * Function: h5trav_set_index * * Purpose: Set indexing properties for the objects & links in the file * * Return: none * *------------------------------------------------------------------------- */ void h5trav_set_index(H5_index_t print_index_by, H5_iter_order_t print_index_order) { trav_index_by = print_index_by; trav_index_order = print_index_order; } /*------------------------------------------------------------------------- * Function: h5trav_set_verbose * * Purpose: Set verbosity of file contents 1=>attributes * * Return: none * *------------------------------------------------------------------------- */ void h5trav_set_verbose(int print_verbose) { trav_verbosity = print_verbose; } /*------------------------------------------------------------------------- * "h5trav info" public functions. used in h5diff *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * Function: trav_addr_add * * Purpose: Add a hardlink address to visited data structure * * Return: void * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ static void trav_addr_add(trav_addr_t *visited, haddr_t addr, const char *path) { size_t idx; /* Index of address to use */ /* Allocate space if necessary */ if(visited->nused == visited->nalloc) { visited->nalloc = MAX(1, visited->nalloc * 2);; visited->objs = (trav_addr_path_t *)HDrealloc(visited->objs, visited->nalloc * sizeof(trav_addr_path_t)); } /* end if */ /* Append it */ idx = visited->nused++; visited->objs[idx].addr = addr; visited->objs[idx].path = HDstrdup(path); } /* end trav_addr_add() */ /*------------------------------------------------------------------------- * Function: trav_addr_visited * * Purpose: Check if an address has already been visited * * Return: TRUE/FALSE * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ static const char * trav_addr_visited(trav_addr_t *visited, haddr_t addr) { size_t u; /* Local index variable */ /* Look for address */ for(u = 0; u < visited->nused; u++) /* Check for address already in array */ if(visited->objs[u].addr == addr) return(visited->objs[u].path); /* Didn't find address */ return(NULL); } /* end trav_addr_visited() */ /*------------------------------------------------------------------------- * Function: traverse_cb * * Purpose: Iterator callback for traversing objects in file * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ static herr_t traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo, void *_udata) { trav_ud_traverse_t *udata = (trav_ud_traverse_t *)_udata; /* User data */ char *new_name = NULL; const char *full_name; const char *already_visited = NULL; /* Whether the link/object was already visited */ /* Create the full path name for the link */ if(udata->is_absolute) { size_t base_len = HDstrlen(udata->base_grp_name); size_t add_slash = base_len ? ((udata->base_grp_name)[base_len - 1] != '/') : 1; size_t new_name_len = base_len + add_slash + HDstrlen(path) + 1; if(NULL == (new_name = (char*)HDmalloc(new_name_len))) return(H5_ITER_ERROR); if(add_slash) HDsnprintf(new_name, new_name_len, "%s/%s", udata->base_grp_name, path); else HDsnprintf(new_name, new_name_len, "%s%s", udata->base_grp_name, path); full_name = new_name; } /* end if */ else full_name = path; /* Perform the correct action for different types of links */ if(linfo->type == H5L_TYPE_HARD) { H5O_info_t oinfo; /* Get information about the object */ if(H5Oget_info_by_name(loc_id, path, &oinfo, H5P_DEFAULT) < 0) { if(new_name) HDfree(new_name); return(H5_ITER_ERROR); } /* end if */ /* If the object has multiple links, add it to the list of addresses * already visited, if it isn't there already */ if(oinfo.rc > 1) if(NULL == (already_visited = trav_addr_visited(udata->seen, oinfo.addr))) trav_addr_add(udata->seen, oinfo.addr, full_name); /* Make 'visit object' callback */ if(udata->visitor->visit_obj) if((*udata->visitor->visit_obj)(full_name, &oinfo, already_visited, udata->visitor->udata) < 0) { if(new_name) HDfree(new_name); return(H5_ITER_ERROR); } /* end if */ } /* end if */ else { /* Make 'visit link' callback */ if(udata->visitor->visit_lnk) if((*udata->visitor->visit_lnk)(full_name, linfo, udata->visitor->udata) < 0) { if(new_name) HDfree(new_name); return(H5_ITER_ERROR); } /* end if */ } /* end else */ if(new_name) HDfree(new_name); return(H5_ITER_CONT); } /* end traverse_cb() */ /*------------------------------------------------------------------------- * Function: traverse * * Purpose: Iterate over all the objects/links in a file. Conforms to the * "visitor" pattern. * * Return: 0 on success, -1 on failure * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ static int traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, hbool_t recurse, const trav_visitor_t *visitor) { H5O_info_t oinfo; /* Object info for starting group */ /* Get info for starting object */ if(H5Oget_info_by_name(file_id, grp_name, &oinfo, H5P_DEFAULT) < 0) return -1; /* Visit the starting object */ if(visit_start && visitor->visit_obj) (*visitor->visit_obj)(grp_name, &oinfo, NULL, visitor->udata); /* Go visiting, if the object is a group */ if(oinfo.type == H5O_TYPE_GROUP) { trav_addr_t seen; /* List of addresses seen */ trav_ud_traverse_t udata; /* User data for iteration callback */ /* Init addresses seen */ seen.nused = seen.nalloc = 0; seen.objs = NULL; /* Check for multiple links to top group */ if(oinfo.rc > 1) trav_addr_add(&seen, oinfo.addr, grp_name); /* Set up user data structure */ udata.seen = &seen; udata.visitor = visitor; udata.is_absolute = (*grp_name == '/'); udata.base_grp_name = grp_name; /* Check for iteration of links vs. visiting all links recursively */ if(recurse) { /* Visit all links in group, recursively */ if(H5Lvisit_by_name(file_id, grp_name, trav_index_by, trav_index_order, traverse_cb, &udata, H5P_DEFAULT) < 0) return -1; } /* end if */ else { /* Iterate over links in group */ if(H5Literate_by_name(file_id, grp_name, trav_index_by, trav_index_order, NULL, traverse_cb, &udata, H5P_DEFAULT) < 0) return -1; } /* end else */ /* Free visited addresses table */ if(seen.objs) { size_t u; /* Local index variable */ /* Free paths to objects */ for(u = 0; u < seen.nused; u++) HDfree(seen.objs[u].path); HDfree(seen.objs); } /* end if */ } /* end if */ return 0; } /*------------------------------------------------------------------------- * Function: trav_info_add * * Purpose: Add a link path & type to info struct * * Return: void * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type) { size_t idx; /* Index of address to use */ /* Allocate space if necessary */ if(info->nused == info->nalloc) { info->nalloc = MAX(1, info->nalloc * 2);; info->paths = (trav_path_t *)HDrealloc(info->paths, info->nalloc * sizeof(trav_path_t)); } /* end if */ /* Append it */ idx = info->nused++; info->paths[idx].path = HDstrdup(path); info->paths[idx].type = obj_type; info->paths[idx].fileno = 0; info->paths[idx].objno = HADDR_UNDEF; } /* end trav_info_add() */ /*------------------------------------------------------------------------- * Function: trav_fileinfo_add * * Purpose: Add a file addr & fileno to info struct * * Return: void * *------------------------------------------------------------------------- */ void trav_fileinfo_add(trav_info_t *info, hid_t loc_id) { H5O_info_t oinfo; size_t idx = info->nused - 1; if ( info->paths[idx].path && HDstrcmp(info->paths[idx].path, ".")) H5Oget_info_by_name(loc_id, info->paths[idx].path, &oinfo, H5P_DEFAULT); else H5Oget_info(loc_id, &oinfo); info->paths[idx].objno = oinfo.addr; info->paths[idx].fileno = oinfo.fileno; } /* end trav_fileinfo_add() */ /*------------------------------------------------------------------------- * Function: trav_info_visit_obj * * Purpose: Callback for visiting object, with 'info' structure * * Return: 0 on success, -1 on failure * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ int trav_info_visit_obj(const char *path, const H5O_info_t *oinfo, const char H5_ATTR_UNUSED *already_visited, void *udata) { size_t idx; trav_info_t *info_p; /* Add the object to the 'info' struct */ /* (object types map directly to "traversal" types) */ trav_info_add((trav_info_t *)udata, path, (h5trav_type_t)oinfo->type); /* set object addr and fileno. These are for checking same object */ info_p = (trav_info_t *) udata; idx = info_p->nused - 1; info_p->paths[idx].objno = oinfo->addr; info_p->paths[idx].fileno = oinfo->fileno; return(0); } /* end trav_info_visit_obj() */ /*------------------------------------------------------------------------- * Function: trav_info_visit_lnk * * Purpose: Callback for visiting link, with 'info' structure * * Return: 0 on success, -1 on failure * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ int trav_info_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata) { /* Add the link to the 'info' struct */ trav_info_add((trav_info_t *)udata, path, ((linfo->type == H5L_TYPE_SOFT) ? H5TRAV_TYPE_LINK : H5TRAV_TYPE_UDLINK)); return(0); } /* end trav_info_visit_lnk() */ /*------------------------------------------------------------------------- * Function: h5trav_getinfo * * Purpose: get an array of "trav_info_t" , containing the name and type of * objects in the file * * Return: number of object names in file * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 6, 2002 * *------------------------------------------------------------------------- */ int h5trav_getinfo(hid_t file_id, trav_info_t *info) { trav_visitor_t info_visitor; /* Visitor structure for trav_info_t's */ /* Init visitor structure */ info_visitor.visit_obj = trav_info_visit_obj; info_visitor.visit_lnk = trav_info_visit_lnk; info_visitor.udata = info; /* Traverse all objects in the file, visiting each object & link */ if(traverse(file_id, "/", TRUE, TRUE, &info_visitor) < 0) return -1; return 0; } /*------------------------------------------------------------------------- * Function: h5trav_getindex * * Purpose: get index of OBJ in list * * Return: index, -1 if not found * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: May 9, 2003 * *------------------------------------------------------------------------- */ ssize_t h5trav_getindex(const trav_info_t *info, const char *obj) { size_t u; /* Local index variable */ /* Loop over all paths in 'info' struct, looking for object */ for(u = 0; u < info->nused; u++) { /* Check for object name having full path (with leading '/') */ if(HDstrcmp(obj, info->paths[u].path) == 0) return((ssize_t)u); /* Check for object name without leading '/' */ if(HDstrcmp(obj, (info->paths[u].path + 1)) == 0) return((ssize_t)u); } /* end for */ return((ssize_t)-1); } /* end h5trav_getindex() */ /*------------------------------------------------------------------------- * Function: trav_info_init * * Purpose: Initialize the info * * Return: void * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 6, 2007 * *------------------------------------------------------------------------- */ void trav_info_init(const char *filename, hid_t fileid, trav_info_t **_info) { trav_info_t *info = (trav_info_t *)HDmalloc(sizeof(trav_info_t)); /* Init info structure */ info->nused = info->nalloc = 0; info->paths = NULL; info->fname = filename; info->fid = fileid; /* Initialize list of visited symbolic links */ info->symlink_visited.nused = 0; info->symlink_visited.nalloc = 0; info->symlink_visited.objs = NULL; info->symlink_visited.dangle_link = FALSE; *_info = info; } /* end trav_info_init() */ /*------------------------------------------------------------------------- * Function: trav_info_free * * Purpose: free info memory * *------------------------------------------------------------------------- */ void trav_info_free(trav_info_t *info) { size_t u; /* Local index variable */ if(info) { /* Free visited symbolic links path and file (if alloc) */ for(u=0; u < info->symlink_visited.nused; u++) { if (info->symlink_visited.objs[u].file) HDfree(info->symlink_visited.objs[u].file); HDfree(info->symlink_visited.objs[u].path); } HDfree(info->symlink_visited.objs); /* Free path names */ for(u = 0; u < info->nused; u++) HDfree(info->paths[u].path); HDfree(info->paths); HDfree(info); } /* end if */ } /* end trav_info_free() */ /*------------------------------------------------------------------------- * "h5trav table" public functions. used in h5repack *------------------------------------------------------------------------- */ /*------------------------------------------------------------------------- * Function: trav_table_visit_obj * * Purpose: Callback for visiting object, with 'table' sructure * * Return: 0 on success, -1 on failure * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ static int trav_table_visit_obj(const char *path, const H5O_info_t *oinfo, const char *already_visited, void *udata) { trav_table_t *table = (trav_table_t *)udata; /* Check if we've already seen this object */ if(NULL == already_visited) /* add object to table */ trav_table_add(table, path, oinfo); else /* Add alias for object to table */ trav_table_addlink(table, oinfo->addr, path); return(0); } /* end trav_table_visit_obj() */ /*------------------------------------------------------------------------- * Function: trav_table_visit_lnk * * Purpose: Callback for visiting link, with 'table' sructure * * Return: 0 on success, -1 on failure * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ static int trav_table_visit_lnk(const char *path, const H5L_info_t H5_ATTR_UNUSED *linfo, void *udata) { /* Add the link to the 'table' struct */ trav_table_add((trav_table_t *)udata, path, NULL); return(0); } /* end trav_table_visit_lnk() */ /*------------------------------------------------------------------------- * Function: h5trav_gettable * * Purpose: get the trav_table_t struct * * Return: 0, -1 on error * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: December 17, 2003 * *------------------------------------------------------------------------- */ int h5trav_gettable(hid_t fid, trav_table_t *table) { trav_visitor_t table_visitor; /* Visitor structure for trav_table_t's */ /* Init visitor structure */ table_visitor.visit_obj = trav_table_visit_obj; table_visitor.visit_lnk = trav_table_visit_lnk; table_visitor.udata = table; /* Traverse all objects in the file, visiting each object & link */ if(traverse(fid, "/", TRUE, TRUE, &table_visitor) < 0) return -1; return 0; } /*------------------------------------------------------------------------- * Function: h5trav_getindext * * Purpose: get index of NAME in list * * Return: index, -1 if not found * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: December 18, 2003 * *------------------------------------------------------------------------- */ int h5trav_getindext(const char *name, const trav_table_t *table) { unsigned int i; for(i = 0; i < table->nobjs; i++) { /* Check for object name having full path (with leading '/') */ if(HDstrcmp(name, table->objs[i].name) == 0) return((int)i); /* Check for object name without leading '/' */ if(HDstrcmp(name, table->objs[i].name + 1) == 0) return((int)i); /* search also in the list of links */ if(table->objs[i].nlinks) { unsigned int j; for ( j=0; jobjs[i].nlinks; j++) { /* Check for object name having full path (with leading '/') */ if(HDstrcmp(name, table->objs[i].links[j].new_name) == 0) return((int)i); /* Check for object name without leading '/' */ if(HDstrcmp(name, table->objs[i].links[j].new_name + 1) == 0) return((int)i); } /* end for */ } /* end if */ } /* end for */ return -1; } /*------------------------------------------------------------------------- * Function: trav_table_add * * Purpose: Add OBJNO, NAME and TYPE of object to table * * Return: void * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 4, 2002 * *------------------------------------------------------------------------- */ static void trav_table_add(trav_table_t *table, const char *path, const H5O_info_t *oinfo) { size_t new_obj; if(table->nobjs == table->size) { table->size = MAX(1, table->size * 2); table->objs = (trav_obj_t *)HDrealloc(table->objs, table->size * sizeof(trav_obj_t)); } /* end if */ new_obj = table->nobjs++; table->objs[new_obj].objno = oinfo ? oinfo->addr : HADDR_UNDEF; table->objs[new_obj].flags[0] = table->objs[new_obj].flags[1] = 0; table->objs[new_obj].is_same_trgobj = 0; table->objs[new_obj].name = (char *)HDstrdup(path); table->objs[new_obj].type = oinfo ? (h5trav_type_t)oinfo->type : H5TRAV_TYPE_LINK; table->objs[new_obj].nlinks = 0; table->objs[new_obj].sizelinks = 0; table->objs[new_obj].links = NULL; } /*------------------------------------------------------------------------- * Function: trav_table_addlink * * Purpose: Add a hardlink name to the object * * Return: void * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: December 17, 2003 * *------------------------------------------------------------------------- */ static void trav_table_addlink(trav_table_t *table, haddr_t objno, const char *path) { size_t i; /* Local index variable */ for(i = 0; i < table->nobjs; i++) { if(table->objs[i].objno == objno) { size_t n; /* already inserted? */ if(HDstrcmp(table->objs[i].name, path) == 0) return; /* allocate space if necessary */ if(table->objs[i].nlinks == (unsigned)table->objs[i].sizelinks) { table->objs[i].sizelinks = MAX(1, table->objs[i].sizelinks * 2); table->objs[i].links = (trav_link_t *)HDrealloc(table->objs[i].links, table->objs[i].sizelinks * sizeof(trav_link_t)); } /* end if */ /* insert it */ n = table->objs[i].nlinks++; table->objs[i].links[n].new_name = (char *)HDstrdup(path); return; } /* end for */ } /* end for */ HDassert(0 && "object not in table?!?"); } /*------------------------------------------------------------------------- * Function: trav_table_addflags * * Purpose: Add FLAGS, NAME and TYPE of object to table * * Return: void * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 4, 2002 * *------------------------------------------------------------------------- */ void trav_table_addflags(unsigned *flags, char *name, h5trav_type_t type, trav_table_t *table) { size_t new_obj; if(table->nobjs == table->size) { table->size = MAX(1, table->size * 2); table->objs = (trav_obj_t *)HDrealloc(table->objs, table->size * sizeof(trav_obj_t)); } /* end if */ new_obj = table->nobjs++; table->objs[new_obj].objno = 0; table->objs[new_obj].flags[0] = flags[0]; table->objs[new_obj].flags[1] = flags[1]; table->objs[new_obj].is_same_trgobj = 0; table->objs[new_obj].name = (char *)HDstrdup(name); table->objs[new_obj].type = type; table->objs[new_obj].nlinks = 0; table->objs[new_obj].sizelinks = 0; table->objs[new_obj].links = NULL; } /*------------------------------------------------------------------------- * Function: trav_table_init * * Purpose: Initialize the table * * Return: void * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 4, 2002 * *------------------------------------------------------------------------- */ void trav_table_init(trav_table_t **tbl) { trav_table_t* table = (trav_table_t*) HDmalloc(sizeof(trav_table_t)); table->size = 0; table->nobjs = 0; table->objs = NULL; *tbl = table; } /*------------------------------------------------------------------------- * Function: trav_table_free * * Purpose: free table memory * * Return: void * * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu * * Date: November 4, 2002 * *------------------------------------------------------------------------- */ void trav_table_free( trav_table_t *table ) { if(table->objs) { unsigned int i; for(i = 0; i < table->nobjs; i++) { HDfree(table->objs[i].name ); if(table->objs[i].nlinks) { unsigned int j; for(j = 0; j < table->objs[i].nlinks; j++) HDfree(table->objs[i].links[j].new_name); HDfree(table->objs[i].links); } /* end if */ } /* end for */ HDfree(table->objs); } /* end if */ HDfree(table); } static herr_t trav_attr(hid_t #ifndef H5TRAV_PRINT_SPACE H5_ATTR_UNUSED #endif /* H5TRAV_PRINT_SPACE */ obj, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ainfo, void *_op_data) { trav_path_op_data_t *op_data = (trav_path_op_data_t *)_op_data; const char *buf = op_data->path; if((strlen(buf)==1) && (*buf=='/')) printf(" %-10s %s%s", "attribute", buf, attr_name); else printf(" %-10s %s/%s", "attribute", buf, attr_name); #ifdef H5TRAV_PRINT_SPACE if(trav_verbosity < 2) { #endif printf("\n"); #ifdef H5TRAV_PRINT_SPACE } else { hid_t attr = -1; hid_t space = -1; hsize_t size[H5S_MAX_RANK]; int ndims; int i; H5S_class_t space_type; if((attr = H5Aopen(obj, attr_name, H5P_DEFAULT))) { space = H5Aget_space(attr); /* Data space */ ndims = H5Sget_simple_extent_dims(space, size, NULL); space_type = H5Sget_simple_extent_type(space); switch(space_type) { case H5S_SCALAR: /* scalar dataspace */ printf(" scalar\n"); break; case H5S_SIMPLE: /* simple dataspace */ printf(" {"); for (i=0; itype) { case H5O_TYPE_GROUP: printf(" %-10s %s", "group", path); break; case H5O_TYPE_DATASET: printf(" %-10s %s", "dataset", path); break; case H5O_TYPE_NAMED_DATATYPE: printf(" %-10s %s", "datatype", path); break; case H5O_TYPE_UNKNOWN: case H5O_TYPE_NTYPES: default: printf(" %-10s %s", "unknown object type", path); break; } /* end switch */ /* Check if we've already seen this object */ if(NULL == already_visited) { trav_path_op_data_t op_data; op_data.path = path; /* Finish printing line about object */ printf("\n"); if(trav_verbosity > 0) H5Aiterate_by_name(print_udata->fid, path, trav_index_by, trav_index_order, NULL, trav_attr, &op_data, H5P_DEFAULT); } else /* Print the link's original name */ printf(" -> %s\n", already_visited); return(0); } /* end trav_print_visit_obj() */ /*------------------------------------------------------------------------- * Function: trav_print_visit_lnk * * Purpose: Callback for visiting link, when printing info * * Return: 0 on success, -1 on failure * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 6, 2007 * *------------------------------------------------------------------------- */ static int trav_print_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata) { trav_print_udata_t *print_udata = (trav_print_udata_t *)udata; /* Print appropriate information for the type of link */ switch(linfo->type) { case H5L_TYPE_SOFT: if(linfo->u.val_size > 0) { char *targbuf = (char*)HDmalloc(linfo->u.val_size + 1); HDassert(targbuf); if(H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) < 0) targbuf[0] = 0; printf(" %-10s %s -> %s\n", "link", path, targbuf); HDfree(targbuf); } /* end if */ else printf(" %-10s %s ->\n", "link", path); break; case H5L_TYPE_EXTERNAL: if(linfo->u.val_size > 0) { char *targbuf; const char *filename = NULL; const char *objname = NULL; targbuf = (char*)HDmalloc(linfo->u.val_size + 1); HDassert(targbuf); if(H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) < 0) targbuf[0] = 0; if(H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) >= 0) printf(" %-10s %s -> %s %s\n", "ext link", path, filename, objname); HDfree(targbuf); } /* end if */ else printf(" %-10s %s ->\n", "ext link", path); break; case H5L_TYPE_HARD: /* Should be handled elsewhere */ return(-1); case H5L_TYPE_ERROR: case H5L_TYPE_MAX: default: printf(" %-10s %s -> ???\n", "unknown type of UD link", path); break; } /* end switch() */ return(0); } /* end trav_print_visit_lnk() */ /*------------------------------------------------------------------------- * Function: h5trav_print * * Purpose: Print information about the objects & links in the file * * Return: 0, -1 on error * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: September 6, 2007 * *------------------------------------------------------------------------- */ int h5trav_print(hid_t fid) { trav_print_udata_t print_udata; /* User data for traversal */ trav_visitor_t print_visitor; /* Visitor structure for printing objects */ /* Init user data for printing */ print_udata.fid = fid; /* Init visitor structure */ print_visitor.visit_obj = trav_print_visit_obj; print_visitor.visit_lnk = trav_print_visit_lnk; print_visitor.udata = &print_udata; /* Traverse all objects in the file, visiting each object & link */ if(traverse(fid, "/", TRUE, TRUE, &print_visitor) < 0) return -1; return 0; } /*------------------------------------------------------------------------- * Function: h5trav_visit * * Purpose: Generic traversal routine for visiting objects and links * * Return: 0, -1 on error * * Programmer: Quincey Koziol, koziol@hdfgroup.org * * Date: November 6, 2007 * *------------------------------------------------------------------------- */ int h5trav_visit(hid_t fid, const char *grp_name, hbool_t visit_start, hbool_t recurse, h5trav_obj_func_t visit_obj, h5trav_lnk_func_t visit_lnk, void *udata) { trav_visitor_t visitor; /* Visitor structure for objects */ /* Init visitor structure */ visitor.visit_obj = visit_obj; visitor.visit_lnk = visit_lnk; visitor.udata = udata; /* Traverse all objects in the file, visiting each object & link */ if(traverse(fid, grp_name, visit_start, recurse, &visitor) < 0) return -1; return 0; } /*------------------------------------------------------------------------- * Function: symlink_visit_add * * Purpose: Add an symbolic link to visited data structure * * Return: 0 on success, -1 on failure * * Programmer: Neil Fortner, nfortne2@hdfgroup.org * Adapted from trav_addr_add in h5trav.c by Quincey Koziol * * Date: September 5, 2008 * *------------------------------------------------------------------------- */ herr_t symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path) { size_t idx; /* Index of address to use */ /* Allocate space if necessary */ if(visited->nused == visited->nalloc) { void *tmp_ptr; visited->nalloc = MAX(1, visited->nalloc * 2); if(NULL == (tmp_ptr = HDrealloc(visited->objs, visited->nalloc * sizeof(symlink_trav_path_t)))) return -1; visited->objs = (symlink_trav_path_t *)tmp_ptr; } /* end if */ /* Append it */ idx = visited->nused++; visited->objs[idx].type = type; visited->objs[idx].file = NULL; visited->objs[idx].path = NULL; if(type == H5L_TYPE_EXTERNAL) { if(NULL == (visited->objs[idx].file = HDstrdup(file))) { visited->nused--; return -1; } /* end if */ } /* end if */ if(NULL == (visited->objs[idx].path = HDstrdup(path))) { visited->nused--; if(visited->objs[idx].file) HDfree (visited->objs[idx].file); return -1; } /* end if */ return 0; } /* end symlink_visit_add() */ /*------------------------------------------------------------------------- * Function: symlink_is_visited * * Purpose: Check if an symbolic link has already been visited * * Return: TRUE/FALSE * * Programmer: Neil Fortner, nfortne2@hdfgroup.org * Adapted from trav_addr_visited in h5trav.c by Quincey Koziol * * Date: September 5, 2008 * *------------------------------------------------------------------------- */ hbool_t symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path) { size_t u; /* Local index variable */ /* Look for symlink */ for(u = 0; u < visited->nused; u++) { /* Check for symlink values already in array */ /* check type and path pair to distingush between symbolic links */ if((visited->objs[u].type == type) && !HDstrcmp(visited->objs[u].path, path)) { /* if external link, file need to be matched as well */ if(visited->objs[u].type == H5L_TYPE_EXTERNAL) if(!HDstrcmp(visited->objs[u].file, file)) return(TRUE); return (TRUE); } /* end if */ } /* end for */ /* Didn't find symlink */ return(FALSE); } /* end symlink_is_visited() */