/* * Small program to illustrate the "misalignment" of members within a compound * datatype, in a datatype fixed by H5Tget_native_type(). */ #include #include #include /* Required for unlink() */ #include "hdf5.h" #include "h5tools.h" const char *fname = "talign.h5"; const char *setname = "align"; /* * This program assumes that there is no extra space between the members 'Ok' * and 'Not Ok', (there shouldn't be because they are of the same atomic type * H5T_NATIVE_FLOAT, and they are placed within the compound next to one * another per construction) */ int main(void) { hid_t fil,spc,set; hid_t cs6, cmp, fix; hid_t cmp1, cmp2, cmp3; hid_t plist; hid_t array_dt; hsize_t dim[2]; hsize_t cdim[4]; char string5[5]; float fok[2] = {1234., 2341.}; float fnok[2] = {5678., 6785.}; float *fptr; char *data; char *mname; int result = 0; printf("%-70s", "Testing alignment in compound datatypes"); strcpy(string5, "Hi!"); unlink(fname); fil = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); if (fil < 0) { puts("*FAILED*"); return 1; } H5E_BEGIN_TRY { H5Gunlink(fil, setname); } H5E_END_TRY; cs6 = H5Tcopy(H5T_C_S1); H5Tset_size(cs6, sizeof(string5)); H5Tset_strpad(cs6, H5T_STR_NULLPAD); cmp = H5Tcreate(H5T_COMPOUND, sizeof(fok) + sizeof(string5) + sizeof(fnok)); H5Tinsert(cmp, "Awkward length", 0, cs6); cdim[0] = sizeof(fok) / sizeof(float); array_dt=H5Tarray_create(H5T_NATIVE_FLOAT,1,cdim,NULL); H5Tinsert(cmp, "Ok", sizeof(string5), array_dt); H5Tclose(array_dt); cdim[0] = sizeof(fnok) / sizeof(float); array_dt=H5Tarray_create(H5T_NATIVE_FLOAT,1,cdim,NULL); H5Tinsert(cmp, "Not Ok", sizeof(fok) + sizeof(string5), array_dt); H5Tclose(array_dt); fix = H5Tget_native_type(cmp,H5T_DIR_DEFAULT); cmp1 = H5Tcreate(H5T_COMPOUND, sizeof(fok)); cdim[0] = sizeof(fok) / sizeof(float); array_dt=H5Tarray_create(H5T_NATIVE_FLOAT,1,cdim,NULL); H5Tinsert(cmp1, "Ok", 0, array_dt); H5Tclose(array_dt); cmp2 = H5Tcreate(H5T_COMPOUND, sizeof(string5)); H5Tinsert(cmp2, "Awkward length", 0, cs6); cmp3 = H5Tcreate(H5T_COMPOUND, sizeof(fnok)); cdim[0] = sizeof(fnok) / sizeof(float); array_dt=H5Tarray_create(H5T_NATIVE_FLOAT,1,cdim,NULL); H5Tinsert(cmp3, "Not Ok", 0, array_dt); H5Tclose(array_dt); plist = H5Pcreate(H5P_DATASET_XFER); H5Pset_preserve(plist, 1); /* * Create a small dataset, and write data into it we write each field * in turn so that we are avoid alignment issues at this point */ dim[0] = 1; spc = H5Screate_simple(1, dim, NULL); set = H5Dcreate(fil, setname, cmp, spc, H5P_DEFAULT); H5Dwrite(set, cmp1, spc, H5S_ALL, plist, fok); H5Dwrite(set, cmp2, spc, H5S_ALL, plist, string5); H5Dwrite(set, cmp3, spc, H5S_ALL, plist, fnok); H5Dclose(set); /* Now open the set, and read it back in */ data = malloc(H5Tget_size(fix)); if (!data) { perror("malloc() failed"); abort(); } set = H5Dopen(fil, setname); H5Dread(set, fix, spc, H5S_ALL, H5P_DEFAULT, data); fptr = (float *)(data + H5Tget_member_offset(fix, 1)); if (fok[0] != fptr[0] || fok[1] != fptr[1] || fnok[0] != fptr[2] || fnok[1] != fptr[3]) { result = 1; printf("%14s (%2d) %6s = %s\n", mname = H5Tget_member_name(fix, 0), (int)H5Tget_member_offset(fix,0), string5, (char *)(data + H5Tget_member_offset(fix, 0))); free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 1)); printf("Data comparison:\n" "%14s (%2d) %6f = %f\n" " %6f = %f\n", mname = H5Tget_member_name(fix, 1), (int)H5Tget_member_offset(fix,1), fok[0], fptr[0], fok[1], fptr[1]); free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 2)); printf("%14s (%2d) %6f = %f\n" " %6f = %6f\n", mname = H5Tget_member_name(fix, 2), (int)H5Tget_member_offset(fix,2), fnok[0], fptr[0], fnok[1], fptr[1]); free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 1)); printf("\n" "Short circuit\n" " %6f = %f\n" " %6f = %f\n" " %6f = %f\n" " %6f = %f\n", fok[0], fptr[0], fok[1], fptr[1], fnok[0], fptr[2], fnok[1], fptr[3]); puts("*FAILED*"); } else { puts(" PASSED"); } free(data); H5Sclose(spc); H5Tclose(cmp); H5Tclose(cmp1); H5Tclose(cmp2); H5Tclose(cmp3); H5Pclose(plist); H5Fclose(fil); unlink(fname); fflush(stdout); return result; }