/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include "hdf5.h" #include "H5private.h" #include "h5tools.h" #include "h5tools_utils.h" /* Name of tool */ #define PROGRAMNAME "h5unjam" #define COPY_BUF_SIZE 1024 hsize_t write_pad(int, hsize_t); hsize_t compute_pad(hsize_t); herr_t copy_to_file(FILE *, FILE *, ssize_t, ssize_t); int do_delete = false; char *output_file = NULL; char *input_file = NULL; char *ub_file = NULL; /* * Command-line options: The user can specify short or long-named * parameters. The long-named ones can be partially spelled. When * adding more, make sure that they don't clash with each other. */ static const char *s_opts = "hu:i:o:d:V"; static struct h5_long_options l_opts[] = {{"help", no_arg, 'h'}, {"i", require_arg, 'i'}, {"u", require_arg, 'u'}, {"o", require_arg, 'o'}, {"delete", no_arg, 'd'}, {NULL, 0, '\0'}}; /*------------------------------------------------------------------------- * Function: usage * * Purpose: Print the usage message * * Return: void *------------------------------------------------------------------------- */ static void usage(const char *prog) { fflush(stdout); fprintf(stdout, "usage: %s -i [-o ] [-u | --delete]\n", prog); fprintf(stdout, "\n"); fprintf(stdout, "Splits user file and HDF5 file into two files: user block data and HDF5 data.\n"); fprintf(stdout, "\n"); fprintf(stdout, "OPTIONS\n"); fprintf(stdout, " -i in_file.h5 Specifies the HDF5 as input. If the input HDF5 file\n"); fprintf(stdout, " contains no user block, exit with an error message.\n"); fprintf(stdout, " -o out_file.h5 Specifies output HDF5 file without a user block.\n"); fprintf(stdout, " If not specified, the user block will be removed from the\n"); fprintf(stdout, " input HDF5 file.\n"); fprintf(stdout, " -u out_user_file\n"); fprintf(stdout, " Specifies the output file containing the data from the\n"); fprintf(stdout, " user block.\n"); fprintf(stdout, " Cannot be used with --delete option.\n"); fprintf(stdout, " --delete Remove the user block from the input HDF5 file. The content\n"); fprintf(stdout, " of the user block is discarded.\n"); fprintf(stdout, " Cannot be used with the -u option.\n"); fprintf(stdout, "\n"); fprintf(stdout, " -h Prints a usage message and exits.\n"); fprintf(stdout, " -V Prints the HDF5 library version and exits.\n"); fprintf(stdout, "\n"); fprintf(stdout, " If neither --delete nor -u is specified, the user block from the input file\n"); fprintf(stdout, " will be displayed to stdout.\n"); fprintf(stdout, "\n"); fprintf(stdout, "Exit Status:\n"); fprintf(stdout, " 0 Succeeded.\n"); fprintf(stdout, " >0 An error occurred.\n"); } /*------------------------------------------------------------------------- * Function: parse_command_line * * Purpose: Parse the command line for the h5dumper. * * Return: Success: EXIT_SUCCESS; * Failure: Exits function with EXIT_FAILURE value. *------------------------------------------------------------------------- */ static int parse_command_line(int argc, const char *const *argv) { int opt = false; /* parse command line options */ while ((opt = H5_get_option(argc, argv, s_opts, l_opts)) != EOF) { switch ((char)opt) { case 'o': output_file = HDstrdup(H5_optarg); if (output_file) h5tools_set_data_output_file(output_file, 1); break; case 'i': input_file = HDstrdup(H5_optarg); if (input_file) h5tools_set_input_file(input_file, 1); break; case 'u': ub_file = HDstrdup(H5_optarg); if (ub_file) h5tools_set_output_file(ub_file, 1); else rawoutstream = stdout; break; case 'd': do_delete = true; break; case 'h': usage(h5tools_getprogname()); h5tools_setstatus(EXIT_SUCCESS); goto done; case 'V': print_version(h5tools_getprogname()); h5tools_setstatus(EXIT_SUCCESS); goto done; case '?': default: usage(h5tools_getprogname()); h5tools_setstatus(EXIT_FAILURE); goto done; } } return EXIT_SUCCESS; done: if (input_file) free(input_file); if (output_file) free(output_file); if (ub_file) free(ub_file); return EXIT_FAILURE; } static void leave(int ret) { h5tools_close(); exit(ret); } /*------------------------------------------------------------------------- * Function: main * * Purpose: HDF5 user block unjammer * * Return: Success: 0 * Failure: 1 *------------------------------------------------------------------------- */ int main(int argc, char *argv[]) { hid_t ifile = H5I_INVALID_HID; hid_t plist = H5I_INVALID_HID; off_t fsize; hsize_t usize; htri_t testval; herr_t status; int res; h5_stat_t sbuf; h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); /* Initialize h5tools lib */ h5tools_init(); if (EXIT_FAILURE == parse_command_line(argc, (const char *const *)argv)) goto done; /* enable error reporting if command line option */ h5tools_error_report(); if (input_file == NULL) { /* no user block */ error_msg("missing argument for HDF5 file input.\n"); help_ref_msg(stderr); h5tools_setstatus(EXIT_FAILURE); goto done; } testval = H5Fis_accessible(input_file, H5P_DEFAULT); if (testval <= 0) { error_msg("Input HDF5 file \"%s\" is not HDF\n", input_file); help_ref_msg(stderr); h5tools_setstatus(EXIT_FAILURE); goto done; } ifile = H5Fopen(input_file, H5F_ACC_RDONLY, H5P_DEFAULT); if (ifile < 0) { error_msg("Can't open input HDF5 file \"%s\"\n", input_file); h5tools_setstatus(EXIT_FAILURE); goto done; } plist = H5Fget_create_plist(ifile); if (plist < 0) { error_msg("Can't get file creation plist for file \"%s\"\n", input_file); h5tools_setstatus(EXIT_FAILURE); goto done; } status = H5Pget_userblock(plist, &usize); if (status < 0) { error_msg("Can't get user block for file \"%s\"\n", input_file); h5tools_setstatus(EXIT_FAILURE); goto done; } H5Pclose(plist); H5Fclose(ifile); if (usize == 0) { /* no user block to remove: message? */ error_msg("\"%s\" has no user block: no change to file\n", input_file); h5tools_setstatus(EXIT_SUCCESS); goto done; } res = HDfstat(HDfileno(rawinstream), &sbuf); if (res < 0) { error_msg("Can't stat file \"%s\"\n", input_file); h5tools_setstatus(EXIT_FAILURE); goto done; } fsize = sbuf.st_size; if (do_delete && (ub_file != NULL)) { error_msg("??\"%s\"\n", ub_file); h5tools_setstatus(EXIT_FAILURE); goto done; } if (output_file == NULL) { error_msg("unable to open output HDF5 file \"%s\"\n", input_file); h5tools_setstatus(EXIT_FAILURE); goto done; } /* copy from 0 to 'usize - 1' into ufid */ if (!do_delete) { if (copy_to_file(rawinstream, rawoutstream, 0, (ssize_t)usize) < 0) { error_msg("unable to copy user block to output file \"%s\"\n", ub_file); h5tools_setstatus(EXIT_FAILURE); goto done; } } /* copy from usize to end of file into h5fid, * starting at end of user block if present */ if (copy_to_file(rawinstream, rawdatastream, (ssize_t)usize, (ssize_t)(fsize - (ssize_t)usize)) < 0) { error_msg("unable to copy hdf5 data to output file \"%s\"\n", output_file); h5tools_setstatus(EXIT_FAILURE); goto done; } done: if (input_file) free(input_file); if (output_file) free(output_file); if (ub_file) { free(ub_file); } leave(h5tools_getstatus()); } /*------------------------------------------------------------------------- * Copy 'how_much' bytes from the input file to the output file, * starting at byte 'where' in the input file. * * Returns 0 on success, -1 on failure. *------------------------------------------------------------------------- */ herr_t copy_to_file(FILE *infid, FILE *ofid, ssize_t _where, ssize_t show_much) { static char buf[COPY_BUF_SIZE]; size_t how_much; off_t where = (off_t)_where; off_t to; off_t from; herr_t ret_value = 0; /* nothing to copy */ if (show_much <= 0) goto done; how_much = (size_t)show_much; /* rewind */ HDfseek(infid, 0L, 0); from = where; to = 0; while (how_much > 0) { size_t bytes_in = 0; /* # of bytes to read */ size_t bytes_read = 0; /* # of bytes actually read */ size_t bytes_wrote = 0; /* # of bytes written */ if (how_much > COPY_BUF_SIZE) bytes_in = COPY_BUF_SIZE; else bytes_in = how_much; /* Seek to correct position in input file */ HDfseek(infid, from, SEEK_SET); /* Read data to buffer */ bytes_read = fread(buf, (size_t)1, bytes_in, infid); if (0 == bytes_read && ferror(infid)) { ret_value = -1; goto done; } /* end if */ if (0 == bytes_read && feof(infid)) { goto done; } /* end if */ /* Seek to correct position in output file */ HDfseek(ofid, to, SEEK_SET); /* Update positions/size */ how_much -= bytes_read; from += (off_t)bytes_read; to += (off_t)bytes_read; /* Write nchars bytes to output file */ bytes_wrote = fwrite(buf, (size_t)1, bytes_read, ofid); if (bytes_wrote != bytes_read || (0 == bytes_wrote && ferror(ofid))) { /* error */ ret_value = -1; goto done; } /* end if */ } /* end while */ done: return ret_value; } /* end copy_to_file */