/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * Small program to illustrate the "misalignment" of members within a compound * datatype, in a datatype fixed by H5Tget_native_type(). */ #include "hdf5.h" #include "H5private.h" #include "h5tools.h" const char *fname = "talign.h5"; const char *setname = "align"; /* * This program assumes that there is no extra space between the members 'Ok' * and 'Not Ok', (there shouldn't be because they are of the same atomic type * H5T_NATIVE_FLOAT, and they are placed within the compound next to one * another per construction) */ int main(void) { hid_t fil = H5I_INVALID_HID, spc = H5I_INVALID_HID, set = H5I_INVALID_HID; hid_t cs6 = H5I_INVALID_HID, cmp = H5I_INVALID_HID, fix = H5I_INVALID_HID; hid_t cmp1 = H5I_INVALID_HID, cmp2 = H5I_INVALID_HID, cmp3 = H5I_INVALID_HID; hid_t plist = H5I_INVALID_HID; hid_t array_dt = H5I_INVALID_HID; hsize_t dim[2]; hsize_t cdim[4]; char string5[5]; float fok[2] = {1234.0f, 2341.0f}; float fnok[2] = {5678.0f, 6785.0f}; float *fptr = NULL; char *data = NULL; int result = 0; herr_t error = 1; printf("%-70s", "Testing alignment in compound datatypes"); strcpy(string5, "Hi!"); HDunlink(fname); fil = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); if (fil < 0) { puts("*FAILED*"); return 1; } H5E_BEGIN_TRY { (void)H5Ldelete(fil, setname, H5P_DEFAULT); } H5E_END_TRY cs6 = H5Tcopy(H5T_C_S1); H5Tset_size(cs6, sizeof(string5)); H5Tset_strpad(cs6, H5T_STR_NULLPAD); cmp = H5Tcreate(H5T_COMPOUND, sizeof(fok) + sizeof(string5) + sizeof(fnok)); H5Tinsert(cmp, "Awkward length", 0, cs6); cdim[0] = sizeof(fok) / sizeof(float); array_dt = H5Tarray_create2(H5T_NATIVE_FLOAT, 1, cdim); H5Tinsert(cmp, "Ok", sizeof(string5), array_dt); H5Tclose(array_dt); cdim[0] = sizeof(fnok) / sizeof(float); array_dt = H5Tarray_create2(H5T_NATIVE_FLOAT, 1, cdim); H5Tinsert(cmp, "Not Ok", sizeof(fok) + sizeof(string5), array_dt); H5Tclose(array_dt); fix = H5Tget_native_type(cmp, H5T_DIR_DEFAULT); cmp1 = H5Tcreate(H5T_COMPOUND, sizeof(fok)); cdim[0] = sizeof(fok) / sizeof(float); array_dt = H5Tarray_create2(H5T_NATIVE_FLOAT, 1, cdim); H5Tinsert(cmp1, "Ok", 0, array_dt); H5Tclose(array_dt); cmp2 = H5Tcreate(H5T_COMPOUND, sizeof(string5)); H5Tinsert(cmp2, "Awkward length", 0, cs6); cmp3 = H5Tcreate(H5T_COMPOUND, sizeof(fnok)); cdim[0] = sizeof(fnok) / sizeof(float); array_dt = H5Tarray_create2(H5T_NATIVE_FLOAT, 1, cdim); H5Tinsert(cmp3, "Not Ok", 0, array_dt); H5Tclose(array_dt); plist = H5Pcreate(H5P_DATASET_XFER); if ((error = H5Pset_preserve(plist, 1)) < 0) goto out; /* * Create a small dataset, and write data into it we write each field * in turn so that we are avoid alignment issues at this point */ dim[0] = 1; spc = H5Screate_simple(1, dim, NULL); set = H5Dcreate2(fil, setname, cmp, spc, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); H5Dwrite(set, cmp1, spc, H5S_ALL, plist, fok); H5Dwrite(set, cmp2, spc, H5S_ALL, plist, string5); H5Dwrite(set, cmp3, spc, H5S_ALL, plist, fnok); H5Dclose(set); /* Now open the set, and read it back in */ data = (char *)malloc(H5Tget_size(fix)); if (!data) { perror("malloc() failed"); HDabort(); } set = H5Dopen2(fil, setname, H5P_DEFAULT); H5Dread(set, fix, spc, H5S_ALL, H5P_DEFAULT, data); fptr = (float *)((void *)(data + H5Tget_member_offset(fix, 1))); H5Dclose(set); out: if (error < 0) { result = 1; puts("*FAILED - HDF5 library error*"); } else if (!(H5_FLT_ABS_EQUAL(fok[0], fptr[0])) || !(H5_FLT_ABS_EQUAL(fok[1], fptr[1])) || !(H5_FLT_ABS_EQUAL(fnok[0], fptr[2])) || !(H5_FLT_ABS_EQUAL(fnok[1], fptr[3]))) { char *mname; result = 1; mname = H5Tget_member_name(fix, 0); printf("%14s (%2d) %6s = %s\n", mname ? mname : "(null)", (int)H5Tget_member_offset(fix, 0), string5, (char *)(data + H5Tget_member_offset(fix, 0))); if (mname) H5free_memory(mname); fptr = (float *)((void *)(data + H5Tget_member_offset(fix, 1))); mname = H5Tget_member_name(fix, 1); printf("Data comparison:\n" "%14s (%2d) %6f = %f\n" " %6f = %f\n", mname ? mname : "(null)", (int)H5Tget_member_offset(fix, 1), (double)fok[0], (double)fptr[0], (double)fok[1], (double)fptr[1]); if (mname) H5free_memory(mname); fptr = (float *)((void *)(data + H5Tget_member_offset(fix, 2))); mname = H5Tget_member_name(fix, 2); printf("%14s (%2d) %6f = %f\n" " %6f = %6f\n", mname ? mname : "(null)", (int)H5Tget_member_offset(fix, 2), (double)fnok[0], (double)fptr[0], (double)fnok[1], (double)fptr[1]); if (mname) H5free_memory(mname); fptr = (float *)((void *)(data + H5Tget_member_offset(fix, 1))); printf("\n" "Short circuit\n" " %6f = %f\n" " %6f = %f\n" " %6f = %f\n" " %6f = %f\n", (double)fok[0], (double)fptr[0], (double)fok[1], (double)fptr[1], (double)fnok[0], (double)fptr[2], (double)fnok[1], (double)fptr[3]); puts("*FAILED - compound type alignnent problem*"); } else { puts(" PASSED"); } if (data) free(data); H5Sclose(spc); H5Tclose(cs6); H5Tclose(cmp); H5Tclose(fix); H5Tclose(cmp1); H5Tclose(cmp2); H5Tclose(cmp3); H5Pclose(plist); H5Fclose(fil); HDunlink(fname); fflush(stdout); return result; }