/* * Generate the binary hdf5 files for the h5dump tests. */ #include "hdf5.h" #define FILE1 "tgroup.h5" #define FILE2 "tdset.h5" #define FILE3 "tattr.h5" #define FILE4 "tslink.h5" #define FILE5 "thlink.h5" #define FILE6 "tcompound.h5" #define FILE7 "tall.h5" static void test_group(void) { hid_t fid, group; fid = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* / */ group = H5Gcreate (fid, "/g1", 0); H5Gclose(group); group = H5Gcreate (fid, "/g2", 0); H5Gclose(group); group = H5Gcreate (fid, "/g3", 0); H5Gclose(group); /* /g1 */ group = H5Gcreate (fid, "/g1/g1.1", 0); H5Gclose(group); group = H5Gcreate (fid, "/g1/g1.2", 0); H5Gclose(group); /* /g2 */ group = H5Gcreate (fid, "/g2/g2.1", 0); H5Gclose(group); /* /g3 */ group = H5Gcreate (fid, "/g3/g3.1", 0); H5Gclose(group); group = H5Gcreate (fid, "/g3/g3.2", 0); H5Gclose(group); group = H5Gcreate (fid, "/g3/g3.3", 0); H5Gclose(group); group = H5Gcreate (fid, "/g3/g3.4", 0); H5Gclose(group); /* /g2/g2.1 */ group = H5Gcreate (fid, "/g2/g2.1/g2.1.1", 0); H5Gclose(group); group = H5Gcreate (fid, "/g2/g2.1/g2.1.2", 0); H5Gclose(group); group = H5Gcreate (fid, "/g2/g2.1/g2.1.3", 0); H5Gclose(group); H5Fclose(fid); } static void test_dataset(void) { hid_t fid, dataset, space; hsize_t dims[2]; int dset1[10][20]; double dset2[30][10]; int i, j; fid = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* dset1 */ dims[0] = 10; dims[1] = 20; space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate(fid, "/dset1", H5T_STD_I32BE, space, H5P_DEFAULT); for (i = 0; i < 10; i++) for (j = 0; j < 20; j++) dset1[i][j] = j; H5Dwrite(dataset, H5T_STD_I32BE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset1); H5Sclose(space); H5Dclose(dataset); /* dset2 */ dims[0] = 30; dims[1] = 10; space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate(fid, "/dset2", H5T_IEEE_F64BE, space, H5P_DEFAULT); for (i = 0; i < 30; i++) for (j = 0; j < 10; j++) dset2[i][j] = j; H5Dwrite(dataset, H5T_IEEE_F64BE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset2); H5Sclose(space); H5Dclose(dataset); H5Fclose(fid); } static void test_attribute(void) { hid_t fid, root, space, attr; hsize_t dims[2]; char buf[60]; int i, data[20]; double d[10]; fid = H5Fcreate(FILE3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); root = H5Gopen (fid, "/"); /* attribute 1 */ dims[0] = 24; space = H5Screate_simple(1, dims, NULL); attr = H5Acreate (root, "attr1", H5T_NATIVE_CHAR, space, H5P_DEFAULT); sprintf(buf, "attribute of root group"); H5Awrite(attr, H5T_NATIVE_CHAR, buf); H5Sclose(space); H5Aclose(attr); /* attribute 2 */ dims[0] = 10; space = H5Screate_simple(1, dims, NULL); attr = H5Acreate (root, "attr2", H5T_STD_I32BE, space, H5P_DEFAULT); for (i = 0; i < 10; i++) data[i] = i+1; H5Awrite(attr, H5T_STD_I32BE, data); H5Sclose(space); H5Aclose(attr); /* attribute 3 */ dims[0] = 10; space = H5Screate_simple(1, dims, NULL); attr = H5Acreate (root, "attr3", H5T_IEEE_F64BE, space, H5P_DEFAULT); for (i = 0; i < 10; i++) d[i] = 0.1 * i; H5Awrite(attr, H5T_IEEE_F64BE, d); H5Sclose(space); H5Aclose(attr); H5Gclose(root); H5Fclose(fid); } static void test_softlink(void) { hid_t fid, root; herr_t status; fid = H5Fcreate(FILE4, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); root = H5Gopen (fid, "/"); status = H5Glink (root, H5G_LINK_SOFT, "somevalue", "slink1"); status = H5Glink (root, H5G_LINK_SOFT, "linkvalue", "slink2"); H5Gclose(root); H5Fclose(fid); } /* / / | \ g1 g2 dset / \ | link1 link2 link3 (g2) (dset) (dset) */ static void test_hardlink(void) { hid_t fid, group, dataset, space; hsize_t dim; int i, dset[5]; fid = H5Fcreate(FILE5, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); dim = 5; space = H5Screate_simple(1, &dim, NULL); dataset = H5Dcreate(fid, "/dset", H5T_STD_I32BE, space, H5P_DEFAULT); for (i = 0; i < 5; i++) dset[i] = i; H5Dwrite(dataset, H5T_STD_I32BE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset); H5Sclose(space); H5Dclose(dataset); group = H5Gcreate (fid, "/g1", 0); H5Glink (group, H5G_LINK_HARD, "/dset", "link2"); H5Gclose(group); group = H5Gcreate (fid, "/g2", 0); H5Glink (group, H5G_LINK_HARD, "/dset", "link3"); H5Gclose(group); group = H5Gopen(fid, "/g1"); H5Glink (group, H5G_LINK_HARD, "/g2", "link1"); H5Gclose(group); H5Fclose(fid); } /* / / | \ \ dset1 group1 type1 type2 | dset2 */ static void test_compound_dt(void) { /* test compound data type */ hid_t fid, group, dataset, space, type; typedef struct { int a; float b; double c; } dset1_t; dset1_t dset1[5]; typedef struct { int a; float b; } dset2_t; dset2_t dset2[5]; typedef struct { int a[4]; float b[5][6]; } dset3_t; typedef struct { int a; float b; } dset4_t; dset4_t dset4[5]; typedef struct { int a; float b; } dset5_t; dset5_t dset5[5]; int i, ndims; const int perm[2]; size_t dim[2]; hsize_t sdim = 5; for (i = 0; i < (int)sdim; i++) { dset1[i].a = i; dset1[i].b = i*i; dset1[i].c = 1./(i+1); dset2[i].a = i; dset2[i].b = i+ i*0.1; dset4[i].a = i; dset4[i].b = i*1.0; dset5[i].a = i; dset5[i].b = i*1.0; } fid = H5Fcreate(FILE6, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); space = H5Screate_simple(1, &sdim, NULL); type = H5Tcreate (H5T_COMPOUND, sizeof(dset1[0])); H5Tinsert(type, "a_name", HOFFSET(dset1_t, a), H5T_STD_I32BE); H5Tinsert(type, "b_name", HOFFSET(dset1_t, b), H5T_IEEE_F32BE); H5Tinsert(type, "c_name", HOFFSET(dset1_t, c), H5T_IEEE_F64BE); dataset = H5Dcreate(fid, "/dset1", type, space, H5P_DEFAULT); H5Dwrite(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset1); H5Tclose(type); H5Dclose(dataset); /* shared data type 1 */ type = H5Tcreate (H5T_COMPOUND, sizeof(dset2_t)); H5Tinsert(type, "int_name", HOFFSET(dset2_t, a), H5T_STD_I32BE); H5Tinsert(type, "float_name", HOFFSET(dset2_t, b), H5T_IEEE_F32BE); H5Tcommit(fid, "type1", type); group = H5Gcreate (fid, "/group1", 0); dataset = H5Dcreate(group, "dset2", type, space, H5P_DEFAULT); H5Dwrite(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset2); H5Tclose(type); H5Dclose(dataset); /* shared data type 2 */ type = H5Tcreate (H5T_COMPOUND, sizeof(dset3_t)); ndims = 1; dim[0] = 4; H5Tinsert_array(type, "int_array", HOFFSET(dset3_t, a), ndims, dim, perm, H5T_STD_I32BE); ndims = 2; dim[0] = 5; dim[1] = 6; H5Tinsert_array(type, "float_array", HOFFSET(dset3_t, b), ndims, dim, perm, H5T_STD_I32BE); H5Tcommit(fid, "type2", type); H5Tclose(type); /* shared data type 3 */ type = H5Tcreate (H5T_COMPOUND, sizeof(dset4_t)); H5Tinsert(type, "int", HOFFSET(dset4_t, a), H5T_STD_I32BE); H5Tinsert(type, "float", HOFFSET(dset4_t, b), H5T_IEEE_F32BE); H5Tcommit(group, "type3", type); dataset = H5Dcreate(group, "dset4", type, space, H5P_DEFAULT); H5Dwrite(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset4); H5Tclose(type); H5Dclose(dataset); H5Gclose(group); /* unamed data type */ group = H5Gcreate (fid, "/group2", 0); type = H5Tcreate (H5T_COMPOUND, sizeof(dset5_t)); H5Tinsert(type, "int", HOFFSET(dset5_t, a), H5T_STD_I32BE); H5Tinsert(type, "float", HOFFSET(dset5_t, b), H5T_IEEE_F32BE); H5Tcommit(group, "type4", type); dataset = H5Dcreate(group, "dset5", type, space, H5P_DEFAULT); H5Dwrite(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset5); H5Gunlink(group,"type4"); H5Tclose(type); H5Dclose(dataset); H5Sclose(space); H5Gclose(group); H5Fclose(fid); } /* / : g1 g2 attr1 attr2 g1 : g1.1 g1.2 g1.1 : dset1.1.1(attr1, attr2) dset1.1.2 g1.2 : g1.2.1 g1.2.1 : slink g2 : dset2.1 dset2.2 */ static void test_all(void) { hid_t fid, group, attr, dataset, space; hsize_t dims[2]; int data[2][2], dset1[10][10], dset2[20]; char buf[60]; int i, j; float dset2_1[10], dset2_2[3][5]; fid = H5Fcreate(FILE7, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* create groups */ group = H5Gcreate (fid, "/g1", 0); H5Gclose(group); group = H5Gcreate (fid, "/g2", 0); H5Gclose(group); group = H5Gcreate (fid, "/g1/g1.1", 0); H5Gclose(group); group = H5Gcreate (fid, "/g1/g1.2", 0); H5Gclose(group); group = H5Gcreate (fid, "/g1/g1.2/g1.2.1", 0); H5Gclose(group); /* root attributes */ group = H5Gopen (fid, "/"); dims[0] = 10; space = H5Screate_simple(1, dims, NULL); attr = H5Acreate (group, "attr1", H5T_NATIVE_CHAR, space, H5P_DEFAULT); sprintf(buf, "abcdefghi"); H5Awrite(attr, H5T_NATIVE_CHAR, buf); H5Sclose(space); H5Aclose(attr); dims[0] = 2; dims[1] = 2; space = H5Screate_simple(2, dims, NULL); attr = H5Acreate (group, "attr2", H5T_STD_I32BE, space, H5P_DEFAULT); data[0][0] = 0; data[0][1] = 1; data[1][0] = 2; data[1][1] = 3; H5Awrite(attr, H5T_STD_I32BE, data); H5Sclose(space); H5Aclose(attr); H5Gclose(group); group = H5Gopen (fid, "/g1/g1.1"); /* dset1.1.1 */ dims[0] = 10; dims[1] = 10; space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate(group, "dset1.1.1", H5T_STD_I32BE, space, H5P_DEFAULT); for (i = 0; i < 10; i++) for (j = 0; j < 10; j++) dset1[i][j] = j; H5Dwrite(dataset, H5T_STD_I32BE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset1); H5Sclose(space); /* attributes of dset1.1.1 */ dims[0] = 27; space = H5Screate_simple(1, dims, NULL); attr = H5Acreate (dataset, "attr1", H5T_NATIVE_CHAR, space, H5P_DEFAULT); sprintf(buf, "1st attribute of dset1.1.1"); H5Awrite(attr, H5T_NATIVE_CHAR, buf); H5Sclose(space); H5Aclose(attr); dims[0] = 27; space = H5Screate_simple(1, dims, NULL); attr = H5Acreate (dataset, "attr2", H5T_NATIVE_CHAR, space, H5P_DEFAULT); sprintf(buf, "2nd attribute of dset1.1.1"); H5Awrite(attr, H5T_NATIVE_CHAR, buf); H5Sclose(space); H5Aclose(attr); H5Dclose(dataset); /* dset1.1.2 */ dims[0] = 20; space = H5Screate_simple(1, dims, NULL); dataset = H5Dcreate(group, "dset1.1.2", H5T_STD_I32BE, space, H5P_DEFAULT); for (i = 0; i < 20; i++) dset2[i] = i; H5Dwrite(dataset, H5T_STD_I32BE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset2); H5Sclose(space); H5Dclose(dataset); H5Gclose(group); /* soft link */ group = H5Gopen (fid, "/g1/g1.2/g1.2.1"); H5Glink (group, H5G_LINK_SOFT, "somevalue", "slink"); H5Gclose(group); group = H5Gopen (fid, "/g2"); /* dset2.1 */ dims[0] = 10; space = H5Screate_simple(1, dims, NULL); dataset = H5Dcreate(group, "dset2.1", H5T_IEEE_F32BE, space, H5P_DEFAULT); for (i = 0; i < 10; i++) dset2_1[i] = i*0.1+1; H5Dwrite(dataset, H5T_IEEE_F32BE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset2_1); H5Sclose(space); H5Dclose(dataset); /* dset2.2 */ dims[0] = 3; dims[1] = 5; space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate(group, "dset2.2", H5T_IEEE_F32BE, space, H5P_DEFAULT); for (i = 0; i < 3; i++) for (j = 0; j < 5; j++) dset2_2[i][j] = i*0.1; H5Dwrite(dataset, H5T_IEEE_F32BE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset2_2); H5Sclose(space); H5Dclose(dataset); H5Gclose(group); H5Fclose(fid); } int main(void){ test_group(); test_attribute(); test_softlink(); test_dataset(); test_hardlink(); test_compound_dt(); test_all(); return 0; }