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System pre-requisites:
An MPI3 implementation that supports MPI_THREAD_MULTIPLE
[i.e. MPICH3 or later - we built with MPICH 3.0.4 in Q6]
Pthread
BOOST
build opa:
It is located in the tarball in the 'openpa' subdirectory, OR get it
from here: git clone git://git.mcs.anl.gov/radix/openpa.git
./configure --prefix=/path/to/opa/install/directory
make
make check
make install
build AXE:
It is located in the tarball in the 'axe' subdirectory, OR get it from
here: svn checkout https://svn.hdfgroup.uiuc.edu/axe/trunk
./configure --prefix=/path/to/axe/install/directory --with-opa=/path/to/opa/install/directory
make
make check
make install
build DAOS, PLFS, and IOD:
Please refer to the DAOS and IOD tarball for instruction on how to build and setup the three libraries.
build Mercury (Function Shipper)
The code is located in tarball in the 'mercury' directory.
refer to the mercury build recipe in:
mercury/README
build HDF5 IOD VOL plugin:
The code is located in the tarball in the 'hdf5_ff' subdirectory, OR
get it from here:
svn checkout http://svn.hdfgroup.uiuc.edu/hdf5/features/hdf5_ff
./configure --with-daos=/path/to/daos/posix --with-plfs=/path/to/plfs --with-iod=/path/to/iod/ --with-axe=/path/to/axe/install/directory PKG_CONFIG_PATH=/path/to/mercury/install/directory/lib/pkgconfig/:/path/to/mchecksum/install/dir --enable-parallel --enable-debug --enable-trace --enable-threadsafe --enable-unsupported --with-pthread=/usr --enable-eff --enable-shared --enable-python
If you want indexing to be built in add --enable-indexing
Note in that case all 3rd party libraries have to be build shared or with -fPIC. You should also have devel python devel libraries and numpy installed on your system.
You should see in the configure summary at the end if the EFF plugin in HDF5 was successfully configured.
make
make check
make install
build the example programs:
The examples are located in hdf5_ff/examples/.
The server is h5ff_server.
The client programs are
- h5ff_client_attr.c : This tests attribute routines (H5A).
- h5ff_client_dset.c : This tests dataset routines (H5D).
- h5ff_client_links.c : This tests Links routines (H5L).
- h5ff_client_map.c : This tests the new Map routines (H5M) added this quarter to support Dynamic Data Structures.
- h5ff_client_multiple_cont.c : This tests access to multiple containers.
- h5ff_client_obj.c : This tests generic object routines (H5O).
- h5ff_client_analysis.c : This tests the analysis shipping functionality (H5AS).
- h5ff_client_M6.2_demo.c: HDF5 and I/O Dispatcher Container Versioning Demonstration
- h5ff_client_M7.2-pep_demo.c: Prefetch, evict, persist data movement demo.
cd path/where/hdf5_ff/is/built/examples/
make
chmod 775 run_ff_tests.sh
./run_ff_tests.sh num_server_procs num_client_procs
Or you can run each test manually:
The client and server need to be launched from the same directory for now.
Launch the server first:
mpiexec -n <x> ./h5ff_server
then launch one of the clients
mpiexec -n <x> ./h5ff_client_xx
Note, for now, the number of clients must be greater than or equal to the number of servers.
H5Part:
fastforward/H5Part-1.6.6_ff/configure --enable-debug --enable-shared --enable-parallel --with-hdf5=/path/to/hdf5
make
make install
VPICIO:
Edit makefile in source to point to H5Part and HDF5 installation
make
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