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/************************************************************
This example shows how to read and write data to a dataset
using gzip compression (also called zlib or deflate). The
program first checks if gzip compression is available,
then if it is it writes integers to a dataset using gzip,
then closes the file. Next, it reopens the file, reads
back the data, and outputs the type of compression and the
maximum value in the dataset to the screen.
************************************************************/
#include "hdf5.h"
#include <stdio.h>
#include <stdlib.h>
#define FILE "h5ex_d_gzip.h5"
#define DATASET "DS1"
#define DIM0 32
#define DIM1 64
#define CHUNK0 4
#define CHUNK1 8
int
main(void)
{
hid_t file = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t dset = H5I_INVALID_HID;
hid_t dcpl = H5I_INVALID_HID;
herr_t status;
htri_t avail;
H5Z_filter_t filter_type;
hsize_t dims[2] = {DIM0, DIM1};
hsize_t chunk[2] = {CHUNK0, CHUNK1};
size_t nelmts;
unsigned int flags;
unsigned int filter_info;
int wdata[DIM0][DIM1]; /* Write buffer */
int rdata[DIM0][DIM1]; /* Read buffer */
int max;
hsize_t i, j;
/*
* Check if gzip compression is available and can be used for both
* compression and decompression. Normally we do not perform error
* checking in these examples for the sake of clarity, but in this
* case we will make an exception because this filter is an
* optional part of the hdf5 library.
*/
avail = H5Zfilter_avail(H5Z_FILTER_DEFLATE);
if (!avail) {
printf("gzip filter not available.\n");
return 1;
}
status = H5Zget_filter_info(H5Z_FILTER_DEFLATE, &filter_info);
if (!(filter_info & H5Z_FILTER_CONFIG_ENCODE_ENABLED) ||
!(filter_info & H5Z_FILTER_CONFIG_DECODE_ENABLED)) {
printf("gzip filter not available for encoding and decoding.\n");
return 1;
}
/*
* Initialize data.
*/
for (i = 0; i < DIM0; i++)
for (j = 0; j < DIM1; j++)
wdata[i][j] = i * j - j;
/*
* Create a new file using the default properties.
*/
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*
* Create dataspace. Setting maximum size to NULL sets the maximum
* size to be the current size.
*/
space = H5Screate_simple(2, dims, NULL);
/*
* Create the dataset creation property list, add the gzip
* compression filter and set the chunk size.
*/
dcpl = H5Pcreate(H5P_DATASET_CREATE);
status = H5Pset_deflate(dcpl, 9);
status = H5Pset_chunk(dcpl, 2, chunk);
/*
* Create the dataset.
*/
dset = H5Dcreate(file, DATASET, H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT);
/*
* Write the data to the dataset.
*/
status = H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata[0]);
/*
* Close and release resources.
*/
status = H5Pclose(dcpl);
status = H5Dclose(dset);
status = H5Sclose(space);
status = H5Fclose(file);
/*
* Now we begin the read section of this example.
*/
/*
* Open file and dataset using the default properties.
*/
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
dset = H5Dopen(file, DATASET, H5P_DEFAULT);
/*
* Retrieve dataset creation property list.
*/
dcpl = H5Dget_create_plist(dset);
/*
* Retrieve and print the filter type. Here we only retrieve the
* first filter because we know that we only added one filter.
*/
nelmts = 0;
filter_type = H5Pget_filter(dcpl, 0, &flags, &nelmts, NULL, 0, NULL, &filter_info);
printf("Filter type is: ");
switch (filter_type) {
case H5Z_FILTER_DEFLATE:
printf("H5Z_FILTER_DEFLATE\n");
break;
case H5Z_FILTER_SHUFFLE:
printf("H5Z_FILTER_SHUFFLE\n");
break;
case H5Z_FILTER_FLETCHER32:
printf("H5Z_FILTER_FLETCHER32\n");
break;
case H5Z_FILTER_SZIP:
printf("H5Z_FILTER_SZIP\n");
break;
case H5Z_FILTER_NBIT:
printf("H5Z_FILTER_NBIT\n");
break;
case H5Z_FILTER_SCALEOFFSET:
printf("H5Z_FILTER_SCALEOFFSET\n");
}
/*
* Read the data using the default properties.
*/
status = H5Dread(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata[0]);
/*
* Find the maximum value in the dataset, to verify that it was
* read correctly.
*/
max = rdata[0][0];
for (i = 0; i < DIM0; i++)
for (j = 0; j < DIM1; j++)
if (max < rdata[i][j])
max = rdata[i][j];
/*
* Print the maximum value.
*/
printf("Maximum value in %s is: %d\n", DATASET, max);
/*
* Close and release resources.
*/
status = H5Pclose(dcpl);
status = H5Dclose(dset);
status = H5Fclose(file);
return 0;
}
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