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/************************************************************
This example shows a way to recursively traverse the file
using H5Literate. The method shown here guarantees that
the recursion will not enter an infinite loop, but does
not prevent objects from being visited more than once.
The program prints the directory structure of the file
specified in FILE. The default file used by this example
implements the structure described in the User's Guide,
chapter 4, figure 26.
************************************************************/
#include "hdf5.h"
#include <stdio.h>
#define FILE "h5ex_g_traverse.h5"
/*
* Define operator data structure type for H5Literate callback.
* During recursive iteration, these structures will form a
* linked list that can be searched for duplicate groups,
* preventing infinite recursion.
*/
struct opdata {
unsigned recurs; /* Recursion level. 0=root */
struct opdata *prev; /* Pointer to previous opdata */
haddr_t addr; /* Group address */
};
/*
* Operator function to be called by H5Literate.
*/
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
herr_t op_func(hid_t loc_id, const char *name, const H5L_info1_t *info, void *operator_data);
#else
herr_t op_func(hid_t loc_id, const char *name, const H5L_info_t *info, void *operator_data);
#endif
/*
* Function to check for duplicate groups in a path.
*/
int group_check(struct opdata *od, haddr_t target_addr);
int
main(void)
{
hid_t file; /* Handle */
herr_t status;
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
H5O_info1_t infobuf;
#else
H5O_info_t infobuf;
#endif
struct opdata od;
/*
* Open file and initialize the operator data structure.
*/
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
status = H5Oget_info2(file, &infobuf, H5O_INFO_ALL);
#else
status = H5Oget_info(file, &infobuf);
#endif
od.recurs = 0;
od.prev = NULL;
od.addr = infobuf.addr;
/*
* Print the root group and formatting, begin iteration.
*/
printf("/ {\n");
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
status = H5Literate1(file, H5_INDEX_NAME, H5_ITER_NATIVE, NULL, op_func, (void *)&od);
#else
status = H5Literate(file, H5_INDEX_NAME, H5_ITER_NATIVE, NULL, op_func, (void *)&od);
#endif
printf("}\n");
/*
* Close and release resources.
*/
status = H5Fclose(file);
return 0;
}
/************************************************************
Operator function. This function prints the name and type
of the object passed to it. If the object is a group, it
is first checked against other groups in its path using
the group_check function, then if it is not a duplicate,
H5Literate is called for that group. This guarantees that
the program will not enter infinite recursion due to a
circular path in the file.
************************************************************/
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
herr_t
op_func(hid_t loc_id, const char *name, const H5L_info1_t *info, void *operator_data)
#else
herr_t
op_func(hid_t loc_id, const char *name, const H5L_info_t *info, void *operator_data)
#endif
{
herr_t status, return_val = 0;
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
H5O_info1_t infobuf;
#else
H5O_info_t infobuf;
#endif
struct opdata *od = (struct opdata *)operator_data;
/* Type conversion */
unsigned spaces = 2 * (od->recurs + 1);
/* Number of whitespaces to prepend
to output */
/*
* Get type of the object and display its name and type.
* The name of the object is passed to this function by
* the Library.
*/
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
status = H5Oget_info_by_name2(loc_id, name, &infobuf, H5O_INFO_ALL, H5P_DEFAULT);
#else
status = H5Oget_info_by_name(loc_id, name, &infobuf, H5P_DEFAULT);
#endif
printf("%*s", spaces, ""); /* Format output */
switch (infobuf.type) {
case H5O_TYPE_GROUP:
printf("Group: %s {\n", name);
/*
* Check group address against linked list of operator
* data structures. We will always run the check, as the
* reference count cannot be relied upon if there are
* symbolic links, and H5Oget_info_by_name always follows
* symbolic links. Alternatively we could use H5Lget_info
* and never recurse on groups discovered by symbolic
* links, however it could still fail if an object's
* reference count was manually manipulated with
* H5Odecr_refcount.
*/
if (group_check(od, infobuf.addr)) {
printf("%*s Warning: Loop detected!\n", spaces, "");
}
else {
/*
* Initialize new operator data structure and
* begin recursive iteration on the discovered
* group. The new opdata structure is given a
* pointer to the current one.
*/
struct opdata nextod;
nextod.recurs = od->recurs + 1;
nextod.prev = od;
nextod.addr = infobuf.addr;
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
return_val = H5Literate_by_name1(loc_id, name, H5_INDEX_NAME, H5_ITER_NATIVE, NULL, op_func,
(void *)&nextod, H5P_DEFAULT);
#else
return_val = H5Literate_by_name(loc_id, name, H5_INDEX_NAME, H5_ITER_NATIVE, NULL, op_func,
(void *)&nextod, H5P_DEFAULT);
#endif
}
printf("%*s}\n", spaces, "");
break;
case H5O_TYPE_DATASET:
printf("Dataset: %s\n", name);
break;
case H5O_TYPE_NAMED_DATATYPE:
printf("Datatype: %s\n", name);
break;
default:
printf("Unknown: %s\n", name);
}
return return_val;
}
/************************************************************
This function recursively searches the linked list of
opdata structures for one whose address matches
target_addr. Returns 1 if a match is found, and 0
otherwise.
************************************************************/
int
group_check(struct opdata *od, haddr_t target_addr)
{
if (od->addr == target_addr)
return 1; /* Addresses match */
else if (!od->recurs)
return 0; /* Root group reached with no matches */
else
return group_check(od->prev, target_addr);
/* Recursively examine the next node */
}
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