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/************************************************************
This example shows how to read and write region references
to an attribute. The program first creates a dataset
containing characters and writes references to region of
the dataset to a new attribute with a dataspace of DIM0,
then closes the file. Next, it reopens the file,
dereferences the references, and outputs the referenced
regions to the screen.
This file is intended for use with HDF5 Library version 1.6
************************************************************/
#include "hdf5.h"
#include <stdio.h>
#include <stdlib.h>
#define FILE "h5ex_t_regrefatt.h5"
#define DATASET "DS1"
#define DATASET2 "DS2"
#define ATTRIBUTE "A1"
#define DIM0 2
#define DS2DIM0 3
#define DS2DIM1 16
int
main(void)
{
hid_t file, space, memspace, dset, dset2, attr;
/* Handles */
herr_t status;
hsize_t dims[1] = {DIM0}, dims2[2] = {DS2DIM0, DS2DIM1}, coords[4][2] = {{0, 1}, {2, 11}, {1, 0}, {2, 4}},
start[2] = {0, 0}, stride[2] = {2, 11}, count[2] = {2, 2}, block[2] = {1, 3};
hssize_t npoints;
hdset_reg_ref_t wdata[DIM0], /* Write buffer */
*rdata; /* Read buffer */
ssize_t size;
char wdata2[DS2DIM0][DS2DIM1] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"}, *rdata2, *name;
int ndims, i;
/*
* Create a new file using the default properties.
*/
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*
* Create a dataset with character data.
*/
space = H5Screate_simple(2, dims2, NULL);
dset2 = H5Dcreate(file, DATASET2, H5T_STD_I8LE, space, H5P_DEFAULT);
status = H5Dwrite(dset2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata2);
/*
* Create reference to a list of elements in dset2.
*/
status = H5Sselect_elements(space, H5S_SELECT_SET, 4, coords[0]);
status = H5Rcreate(&wdata[0], file, DATASET2, H5R_DATASET_REGION, space);
/*
* Create reference to a hyperslab in dset2, close dataspace.
*/
status = H5Sselect_hyperslab(space, H5S_SELECT_SET, start, stride, count, block);
status = H5Rcreate(&wdata[1], file, DATASET2, H5R_DATASET_REGION, space);
status = H5Sclose(space);
/*
* Create dataset with a scalar dataspace to serve as the parent
* for the attribute.
*/
space = H5Screate(H5S_SCALAR);
dset = H5Dcreate(file, DATASET, H5T_STD_I32LE, space, H5P_DEFAULT);
status = H5Sclose(space);
/*
* Create dataspace. Setting maximum size to NULL sets the maximum
* size to be the current size.
*/
space = H5Screate_simple(1, dims, NULL);
/*
* Create the attribute and write the region references to it.
*/
attr = H5Acreate(dset, ATTRIBUTE, H5T_STD_REF_DSETREG, space, H5P_DEFAULT);
status = H5Awrite(attr, H5T_STD_REF_DSETREG, wdata);
/*
* Close and release resources.
*/
status = H5Aclose(attr);
status = H5Dclose(dset);
status = H5Dclose(dset2);
status = H5Sclose(space);
status = H5Fclose(file);
/*
* Now we begin the read section of this example. Here we assume
* the attribute has the same name and rank, but can have any size.
* Therefore we must allocate a new array to read in data using
* malloc().
*/
/*
* Open file, dataset, and attribute.
*/
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
dset = H5Dopen(file, DATASET);
attr = H5Aopen_name(dset, ATTRIBUTE);
/*
* Get dataspace and allocate memory for read buffer.
*/
space = H5Aget_space(attr);
ndims = H5Sget_simple_extent_dims(space, dims, NULL);
rdata = (hdset_reg_ref_t *)malloc(dims[0] * sizeof(hdset_reg_ref_t));
status = H5Sclose(space);
/*
* Read the data.
*/
status = H5Aread(attr, H5T_STD_REF_DSETREG, rdata);
/*
* Output the data to the screen.
*/
for (i = 0; i < dims[0]; i++) {
printf("%s[%d]:\n ->", ATTRIBUTE, i);
/*
* Open the referenced object, retrieve its region as a
* dataspace selection.
*/
dset2 = H5Rdereference(dset, H5R_DATASET_REGION, &rdata[i]);
space = H5Rget_region(dset, H5R_DATASET_REGION, &rdata[i]);
/*
* Get the length of the object's name, allocate space, then
* retrieve the name.
*/
size = 1 + H5Iget_name(dset2, NULL, 0);
name = (char *)malloc(size);
size = H5Iget_name(dset2, name, size);
if (size <= 1)
name[0] = '\0';
/*
* Allocate space for the read buffer. We will only allocate
* enough space for the selection, plus a null terminator. The
* read buffer will be 1-dimensional.
*/
npoints = H5Sget_select_npoints(space);
rdata2 = (char *)malloc(npoints + 1);
/*
* Read the dataset region, and add a null terminator so we can
* print it as a string.
*/
memspace = H5Screate_simple(1, (hsize_t *)&npoints, NULL);
status = H5Dread(dset2, H5T_NATIVE_CHAR, memspace, space, H5P_DEFAULT, rdata2);
rdata2[npoints] = '\0';
/*
* Print the name and region data, close and release resources.
*/
printf(" %s: %s\n", name, rdata2);
free(rdata2);
free(name);
status = H5Sclose(space);
status = H5Sclose(memspace);
status = H5Dclose(dset2);
}
/*
* Close and release resources.
*/
free(rdata);
status = H5Aclose(attr);
status = H5Dclose(dset);
status = H5Fclose(file);
return 0;
}
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