1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
|
/************************************************************
This example shows how to read and write object references
to an attribute. The program first creates objects in the
file and writes references to those objects to an
attribute with a dataspace of DIM0, then closes the file.
Next, it reopens the file, dereferences the references,
and outputs the names of their targets to the screen.
************************************************************/
#include "hdf5.h"
#include <stdio.h>
#include <stdlib.h>
#define FILE "h5ex_t_objrefatt.h5"
#define DATASET "DS1"
#define ATTRIBUTE "A1"
#define DIM0 2
#define RANK 1
int
main(void)
{
hid_t file = H5I_INVALID_HID; /* File Handle */
hid_t space = H5I_INVALID_HID; /* Dataspace Handle */
hid_t dset = H5I_INVALID_HID; /* Dataset Handle */
hid_t obj = H5I_INVALID_HID; /* Object Handle */
hid_t attr = H5I_INVALID_HID; /* Attribute Handle */
herr_t status;
hsize_t dims[1] = {DIM0};
ssize_t size;
char *name = NULL;
int ndims;
hsize_t i;
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
hid_t ref_type = H5T_STD_REF; /* Reference datatype */
H5R_ref_t wdata[DIM0]; /* buffer to write to disk */
H5R_ref_t *rdata = NULL; /* buffer to read into*/
H5O_type_t objtype; /* Reference type */
#else
hid_t ref_type = H5T_STD_REF_OBJ; /* Reference datatype */
hobj_ref_t wdata[DIM0]; /* Write buffer */
hobj_ref_t *rdata = NULL; /* Read buffer */
H5O_type_t objtype;
#endif
/*
* Create a new file using the default properties.
*/
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*
* Create a dataset with a null dataspace.
*/
space = H5Screate(H5S_NULL);
obj = H5Dcreate(file, "DS2", H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Dclose(obj);
status = H5Sclose(space);
/*
* Create a group.
*/
obj = H5Gcreate(file, "G1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Gclose(obj);
/*
* Create dataset with a null dataspace to serve as the parent for
* the attribute.
*/
space = H5Screate(H5S_NULL);
dset = H5Dcreate(file, DATASET, H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
status = H5Sclose(space);
/*
* Create dataspace. Setting maximum size to NULL sets the maximum
* size to be the current size.
*/
space = H5Screate_simple(RANK, dims, NULL);
/*
* Create references to the previously created objects.
*/
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
status = H5Rcreate_object(file, "G1", H5R_OBJECT, &wdata[0]);
status = H5Rcreate_object(file, "DS2", H5R_OBJECT, &wdata[1]);
#else
/*
* Passing -1
* as space_id causes this parameter to be ignored. Other values
* besides valid dataspaces result in an error.
*/
status = H5Rcreate(&wdata[0], file, "G1", H5R_OBJECT, -1);
status = H5Rcreate(&wdata[1], file, "DS2", H5R_OBJECT, -1);
#endif
/*
* Create the attribute and write the object references to it.
*/
attr = H5Acreate(dset, ATTRIBUTE, ref_type, space, H5P_DEFAULT, H5P_DEFAULT);
status = H5Awrite(attr, ref_type, wdata);
/*
* Close and release resources.
*/
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
status = H5Rdestroy(&wdata[0]);
status = H5Rdestroy(&wdata[1]);
#endif
status = H5Aclose(attr);
status = H5Dclose(dset);
status = H5Sclose(space);
status = H5Fclose(file);
/*
* Now we begin the read section of this example. Here we assume
* the attribute has the same name and rank, but can have any size.
* Therefore we must allocate a new array to read in data using
* malloc().
*/
/*
* Open file, dataset, and attribute.
*/
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
dset = H5Dopen(file, DATASET, H5P_DEFAULT);
attr = H5Aopen(dset, ATTRIBUTE, H5P_DEFAULT);
/*
* Get dataspace and allocate memory for read buffer.
*/
space = H5Aget_space(attr);
ndims = H5Sget_simple_extent_dims(space, dims, NULL);
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
rdata = (H5R_ref_t *)malloc(dims[0] * sizeof(H5R_ref_t));
#else
rdata = (hobj_ref_t *)malloc(dims[0] * sizeof(hobj_ref_t));
#endif
/*
* Read the data.
*/
status = H5Aread(attr, ref_type, rdata);
/*
* Output the data to the screen.
*/
for (i = 0; i < dims[0]; i++) {
printf("%s[%llu]:\n ->", ATTRIBUTE, i);
/*
* Open the referenced object, get its name and type.
*/
#if H5_VERSION_GE(1, 10, 0) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
obj = H5Ropen_object(&rdata[i], H5P_DEFAULT, H5P_DEFAULT);
status = H5Rget_obj_type3(&rdata[i], H5P_DEFAULT, &objtype);
#else
obj = H5Rdereference(dset, H5P_DEFAULT, H5R_OBJECT, &rdata[i]);
status = H5Rget_obj_type(dset, H5R_OBJECT, &rdata[i], &objtype);
#endif
#else
obj = H5Rdereference(dset, H5R_OBJECT, &rdata[i]);
status = H5Rget_obj_type(dset, H5R_OBJECT, &rdata[i], &objtype);
#endif
/*
* Get the length of the name, allocate space, then retrieve
* the name.
*/
size = 1 + H5Iget_name(obj, NULL, 0);
name = (char *)malloc(size);
size = H5Iget_name(obj, name, size);
/*
* Print the object type and close the object.
*/
switch (objtype) {
case H5O_TYPE_GROUP:
printf("Group");
break;
case H5O_TYPE_DATASET:
printf("Dataset");
break;
case H5O_TYPE_NAMED_DATATYPE:
printf("Named Datatype");
break;
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
printf("Unknown");
}
status = H5Oclose(obj);
/*
* Print the name and deallocate space for the name.
*/
printf(": %s\n", name);
free(name);
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
status = H5Rdestroy(&rdata[i]);
#endif
}
/*
* Close and release resources.
*/
free(rdata);
status = H5Aclose(attr);
status = H5Dclose(dset);
status = H5Sclose(space);
status = H5Fclose(file);
return 0;
}
|
