1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
|
#! /bin/sh
#
# Copyright by The HDF Group.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic document set and is
# linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access
# to either file, you may request a copy from help@hdfgroup.org.
#
# A script to reconfigure autotools for HDF5, and to recreate other
# generated files specifc to HDF5.
#
# IMPORTANT OS-X NOTE
#
# If you are using OS-X, you will probably not have the autotools
# installed, even if you have the XCode command-line tools. The
# easiest way to fix this is to install them via Homebrew:
#
# http://brew.sh/
#
# After you install the base packages, install autoconf, automake, and
# libtool.
#
# brew install autoconf
# brew install automake
# brew install libtool
#
# This only takes a few minutes. Note that libtool and libtoolize will
# be glibtool and glibtoolize so as not to conflict with Apple's non-gnu
# tools. This autogen.sh script handles this for you.
#
# END IMPORTANT OS-X NOTE
#
# If you want to use a particular version of the autotools, the paths
# to each tool can be overridden using the following environment
# variables:
#
# HDF5_ACLOCAL
# HDF5_AUTOHEADER
# HDF5_AUTOMAKE
# HDF5_AUTOCONF
# HDF5_LIBTOOL
# HDF5_M4
# HDF5_FLEX
# HDF5_BISON
#
# Note that aclocal will attempt to include libtool's share/aclocal
# directory.
#
# This script takes two potential options:
#
# -p, --production
#
# When this is selected, the autotools versions are set to the paths
# and versions used by The HDF Group to produce the released versions
# of the library.
#
# NOTE: This is probably temporary. Once we update our dev machines
# to have recent versions of the autotools this option will probably
# be removed.
#
# -v, --verbose
#
# This emits some extra information, mainly tool versions.
echo
echo "**************************"
echo "* HDF5 autogen.sh script *"
echo "**************************"
echo
# Default is not production
production=false
# Default is not verbose output
verbose=false
optspec=":hpv-"
while getopts "$optspec" optchar; do
case "${optchar}" in
-)
case "${OPTARG}" in
production)
echo "Setting production mode..."
echo
production=true
;;
verbose)
echo "Setting verbosity: high"
echo
verbose=true
;;
*)
if [ "$OPTERR" = 1 ] && [ "${optspec:0:1}" != ":" ]; then
echo "Unknown option --${OPTARG}" >&2
fi
;;
esac;;
h)
echo "usage: $0 [-p|--production]"
echo
echo " -p Used by THG to ensure that particular versions"
echo " of the autotools are used and hard-codes"
echo " autotools paths to THG machines. Not for"
echo " non-HDF-Group users!"
echo
echo " NOTE: Each autotool can be set via an environment variable."
echo " These are documented inside this autogen.sh script."
echo
exit 0
;;
p)
echo "Setting production mode..."
echo
production=true
;;
v)
echo "Setting verbosity: high"
echo
verbose=true
;;
*)
if [ "$OPTERR" != 1 ] || [ "${optspec:0:1}" = ":" ]; then
echo "Non-option argument: '-${OPTARG}'" >&2
fi
;;
esac
done
if [ "$production" = true ] ; then
# Production mode
#
# Hard-code canonical HDF Group tool locations and ensure
# version numbers are correct.
# Production versions of the tools
AUTOCONF_VERSION="autoconf (GNU Autoconf) 2.69"
AUTOMAKE_VERSION="automake (GNU automake) 1.14.1"
AUTOHEADER_VERSION="autoheader (GNU Autoconf) 2.69"
ACLOCAL_VERSION="aclocal (GNU automake) 1.14.1"
LIBTOOL_VERSION="(GNU libtool) 2.4.2"
M4_VERSION="m4 (GNU M4) 1.4.17"
BISON_VERSION="bison (GNU Bison) 2.7"
FLEX_VERSION="flex 2.5.37"
# If paths to tools are not specified, assume they are
# located in /mnt/hdf/packages and set paths accordingly.
if test -z ${HDF5_AUTOCONF}; then
HDF5_AUTOCONF=/mnt/hdf/packages/autoconf/autoconf-2.69/bin/autoconf
fi
if test -z ${HDF5_AUTOMAKE}; then
HDF5_AUTOMAKE=/mnt/hdf/packages/automake/automake-1.14.1/bin/automake-1.14
fi
if test -z ${HDF5_AUTOHEADER}; then
HDF5_AUTOHEADER=/mnt/hdf/packages/autoconf/autoconf-2.69/bin/autoheader
fi
if test -z ${HDF5_ACLOCAL}; then
HDF5_ACLOCAL=/mnt/hdf/packages/automake/automake-1.14.1/bin/aclocal-1.14
fi
if test -z ${HDF5_LIBTOOL}; then
HDF5_LIBTOOL=/mnt/hdf/packages/libtool/libtool-2.4.2/bin/libtool
fi
if test -z ${HDF5_M4}; then
HDF5_M4=/mnt/hdf/packages/m4/m4-1.4.17/bin/m4
fi
if test -z ${HDF5_BISON}; then
HDF5_BISON=/usr/hdf/bin/bison
fi
if test -z ${HDF5_FLEX}; then
HDF5_FLEX=/usr/hdf/bin/flex
fi
# Check version numbers of all autotools against the "correct" versions
AC_VERS=`${HDF5_AUTOCONF} --version 2>&1 | grep "^${AUTOCONF_VERSION}"`
if test -z "${AC_VERS}"; then
echo "${HDF5_AUTOCONF} version is not ${AUTOCONF_VERSION}"
${HDF5_AUTOCONF} --version
exit 1
fi
AM_VERS=`${HDF5_AUTOMAKE} --version 2>&1 | grep "^${AUTOMAKE_VERSION}"`
if test -z "${AM_VERS}"; then
echo "${HDF5_AUTOMAKE} version is not ${AUTOMAKE_VERSION}"
${HDF5_AUTOMAKE} --version
exit 1
fi
AH_VERS=`${HDF5_AUTOHEADER} --version 2>&1 | grep "^${AUTOHEADER_VERSION}"`
if test -z "${AH_VERS}"; then
echo "${HDF5_AUTOHEADER} version is not ${AUTOHEADER_VERSION}"
${HDF5_AUTOHEADER} --version
exit 1
fi
AL_VERS=`${HDF5_ACLOCAL} --version 2>&1 | grep "^${ACLOCAL_VERSION}"`
if test -z "${AL_VERS}"; then
echo "${HDF5_ACLOCAL} version is not ${ACLOCAL_VERSION}"
${HDF5_ACLOCAL} --version
exit 1
fi
LT_VERS=`${HDF5_LIBTOOL} --version 2>&1 | grep "${LIBTOOL_VERSION}"`
if test -z "${LT_VERS}"; then
echo "${HDF5_LIBTOOL} version is not ${LIBTOOL_VERSION}"
${HDF5_LIBTOOL} --version
exit 1
fi
M4_VERS=`${HDF5_M4} --version 2>&1 | grep "${M4_VERSION}"`
if test -z "${M4_VERS}"; then
echo "${HDF5_M4} version is not ${M4_VERSION}"
${HDF5_M4} --version
exit 1
fi
BI_VERS=`${HDF5_BISON} --version 2>&1 | grep "^${BISON_VERSION}"`
if test -z "${BI_VERS}"; then
echo "${HDF5_BISON} version is not ${BISON_VERSION}"
exit 1
fi
FL_VERS=`${HDF5_FLEX} --version 2>&1 | grep "^${FLEX_VERSION}"`
if test -z "${FL_VERS}"; then
echo "${HDF5_FLEX} version is not ${FLEX_VERSION}"
exit 1
fi
else
# Not in production mode
#
# If paths to autotools are not specified, use whatever the system
# has installed as the default. We use 'which <tool>' to
# show exactly what's being used.
if test -z ${HDF5_AUTOCONF}; then
HDF5_AUTOCONF=$(which autoconf)
fi
if test -z ${HDF5_AUTOMAKE}; then
HDF5_AUTOMAKE=$(which automake)
fi
if test -z ${HDF5_AUTOHEADER}; then
HDF5_AUTOHEADER=$(which autoheader)
fi
if test -z ${HDF5_ACLOCAL}; then
HDF5_ACLOCAL=$(which aclocal)
fi
if test -z ${HDF5_LIBTOOL}; then
case "`uname`" in
Darwin*)
# libtool on OS-X is non-gnu
HDF5_LIBTOOL=$(which glibtool)
;;
*)
HDF5_LIBTOOL=$(which libtool)
;;
esac
fi
if test -z ${HDF5_M4}; then
HDF5_M4=$(which m4)
fi
if test -z ${HDF5_BISON}; then
HDF5_BISON=$(which bison)
fi
if test -z ${HDF5_FLEX}; then
HDF5_FLEX=$(which flex)
fi
fi # production
# Make sure that these versions of the autotools are in the path
AUTOCONF_DIR=`dirname ${HDF5_AUTOCONF}`
LIBTOOL_DIR=`dirname ${HDF5_LIBTOOL}`
M4_DIR=`dirname ${HDF5_M4}`
BISON_DIR=`dirname ${HDF5_BISON}`
FLEX_DIR=`dirname ${HDF5_FLEX}`
PATH=${AUTOCONF_DIR}:${LIBTOOL_DIR}:${M4_DIR}:${FLEX_DIR}:${BISON_DIR}:$PATH
# Make libtoolize match the specified libtool
case "`uname`" in
Darwin*)
# libtoolize on OS-X is non-gnu
HDF5_LIBTOOLIZE="${LIBTOOL_DIR}/glibtoolize"
;;
*)
HDF5_LIBTOOLIZE="${LIBTOOL_DIR}/libtoolize"
;;
esac
# Run autotools in order
#
# When available, we use the --force option to ensure all files are
# updated. This prevents the autotools from re-running to fix dependencies
# during the 'make' step, which can be a problem if environment variables
# were set on the command line during autogen invocation.
# Some versions of libtoolize will suggest that we add ACLOCAL_AMFLAGS
# = '-I m4'. This is already done in commence.am, which is included
# in Makefile.am. You can ignore this suggestion.
# LIBTOOLIZE
libtoolize_cmd="${HDF5_LIBTOOLIZE} --copy --force"
echo ${libtoolize_cmd}
if [ "$verbose" = true ] ; then
${HDF5_LIBTOOLIZE} --version
fi
${libtoolize_cmd} || exit 1
echo
echo "NOTE: You can ignore the warning about adding -I m4."
echo " We already do this in an included file."
echo
# ACLOCAL
if test -e "${LIBTOOL_DIR}/../share/aclocal" ; then
aclocal_include="-I ${LIBTOOL_DIR}/../share/aclocal"
fi
aclocal_cmd="${HDF5_ACLOCAL} --force ${aclocal_include}"
echo ${aclocal_cmd}
if [ "$verbose" = true ] ; then
${HDF5_ACLOCAL} --version
fi
${aclocal_cmd} || exit 1
echo
# AUTOHEADER
autoheader_cmd="${HDF5_AUTOHEADER} --force"
echo ${autoheader_cmd}
if [ "$verbose" = true ] ; then
${HDF5_AUTOHEADER} --version
fi
${autoheader_cmd} || exit 1
echo
# AUTOMAKE
automake_cmd="${HDF5_AUTOMAKE} --add-missing --force-missing"
echo ${automake_cmd}
if [ "$verbose" = true ] ; then
${HDF5_AUTOMAKE} --version
fi
${automake_cmd} || exit 1
echo
# AUTOCONF
autoconf_cmd="${HDF5_AUTOCONF} --force"
echo ${autoconf_cmd}
if [ "$verbose" = true ] ; then
${HDF5_AUTOCONF} --version
fi
${autoconf_cmd} || exit 1
echo
# Run scripts that process source.
# Run trace script
# The trace script adds H5TRACE macros to library source files. It should
# have no effect on files that don't have HDF5 API macros in them.
echo
echo "Running trace script:"
echo "NOTE: NO TRACE warnings in H5E code are normal and expected."
bin/trace src/H5*.c || exit 1
# Run make_err
# make_err automatically generates the H5E headers that create error message
# types for HDF5.
echo
echo "Running error generation script:"
bin/make_err src/H5err.txt || exit 1
# Run make_vers
# make_vers automatically generates the public headers that define the API version
# macros for HDF5.
echo
echo "Running API version generation script:"
bin/make_vers src/H5vers.txt || exit 1
# Run flex and bison
# automatically generates hl/src/H5LTanalyze.c and hl/src/H5LTparse.c
echo
echo "Running flex/bison:"
cd hl/src
echo "Generate hl/src/H5LTparse.c from hl/src/H5LTparse.y"
if [ "$verbose" = true ] ; then
${HDF5_BISON} --version
fi
${HDF5_BISON} -pH5LTyy -o H5LTparse.c -d H5LTparse.y
echo "Generate hl/src/H5LTanalyze.c from hl/src/H5LTanalyze.l"
if [ "$verbose" = true ] ; then
${HDF5_FLEX} --version
fi
${HDF5_FLEX} --nounistd -PH5LTyy -o H5LTanalyze.c H5LTanalyze.l
# fix H5LTparse.c to declare H5LTyyparse return type as an hid_t
# instead of int. Currently the generated function H5LTyyparse is
# generated with a return value of type int, which is a mapping to the
# flex yyparse function. The return value in the HL library should be
# an hid_t.
# I propose to not use flex to generate this function, but for now I am
# adding a perl command to find and replace this function declaration in
# H5LTparse.c.
perl -0777 -pi -e 's/int\nyyparse/hid_t\nyyparse/igs' H5LTparse.c
perl -0777 -pi -e 's/int H5LTyyparse/hid_t H5LTyyparse/igs' H5LTparse.c
cd ../..
echo
exit 0
|