1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*****************************************************************************
FILE
trefer.cpp - HDF5 C++ testing the functionalities associated with the C
Reference interface (H5R)
***************************************************************************/
#ifdef OLD_HEADER_FILENAME
#include <iostream.h>
#else
#include <iostream>
#endif
#include <string>
#ifndef H5_NO_NAMESPACE
#ifndef H5_NO_STD
using std::cerr;
using std::endl;
#endif // H5_NO_STD
#endif
#include "testhdf5.h" // C test header file
#include "H5Cpp.h" // C++ API header file
#ifndef H5_NO_NAMESPACE
using namespace H5;
#endif
#include "h5cpputil.h" // C++ utilility header file
const H5std_string FILE1("trefer1.h5");
const H5std_string FILE2("trefer2.h5");
const H5std_string FILE3("trefer3.h5");
const H5std_string DSET_DEFAULT_NAME("default");
const H5std_string MEMBER1( "a_name" );
const H5std_string MEMBER2( "b_name" );
const H5std_string MEMBER3( "c_name" );
// 1-D dataset with fixed dimensions
const H5std_string SPACE1_NAME("Space1");
const int SPACE1_RANK = 1;
const int SPACE1_DIM1 = 4;
// 2-D dataset with fixed dimensions
const H5std_string SPACE2_NAME("Space2");
const int SPACE2_RANK = 2;
const int SPACE2_DIM1 = 10;
const int SPACE2_DIM2 = 10;
// Larger 1-D dataset with fixed dimensions
const H5std_string SPACE3_NAME("Space3");
const int SPACE3_RANK = 1;
const int SPACE3_DIM1 = 100;
// Element selection information
const int POINT1_NPOINTS = 10;
// Compound datatype
typedef struct s1_t {
unsigned int a;
unsigned int b;
float c;
} s1_t;
/****************************************************************
**
** test_reference_obj(): Test basic object reference functionality.
** Tests references to various kinds of objects
**
****************************************************************/
static void
test_reference_obj(void)
{
int i; // counting variables
const H5std_string write_comment="Foo!"; // Comments for group
// Output message about test being performed
MESSAGE(5, ("Testing Object Reference Functions\n"));
H5File* file1 = NULL;
try {
hobj_ref_t *wbuf, // buffer to write to disk
*rbuf, // buffer read from disk
*tbuf; // temp. buffer read from disk
// Allocate write & read buffers
int temp_size = MAX(sizeof(unsigned),sizeof(hobj_ref_t));
wbuf=(hobj_ref_t*)malloc(temp_size*SPACE1_DIM1);
rbuf=(hobj_ref_t*)malloc(temp_size*SPACE1_DIM1);
tbuf=(hobj_ref_t*)malloc(temp_size*SPACE1_DIM1);
// Create file FILE1
file1 = new H5File (FILE1, H5F_ACC_TRUNC);
// Create dataspace for datasets
hsize_t dims1[] = {SPACE1_DIM1};
DataSpace sid1(SPACE1_RANK, dims1);
// Create a group
Group group = file1->createGroup("Group1", (size_t)-1);
// Set group's comment
group.setComment(".", write_comment);
// Create a dataset (inside /Group1)
DataSet dataset = group.createDataSet("Dataset1", PredType::NATIVE_UINT, sid1);
unsigned *tu32; // Temporary pointer to uint32 data
for (tu32=(unsigned *)wbuf, i=0; i<SPACE1_DIM1; i++)
*tu32++=i*3; // from C test
// Write selection to disk
dataset.write(wbuf, PredType::NATIVE_UINT);
// Close Dataset
dataset.close();
// Create another dataset (inside /Group1)
dataset = group.createDataSet("Dataset2", PredType::NATIVE_UCHAR, sid1);
// Close Dataset
dataset.close();
// Create a datatype to refer to
CompType dtype1(sizeof(s1_t));
// Insert fields
dtype1.insertMember(MEMBER1, HOFFSET(s1_t, a), PredType::NATIVE_INT);
dtype1.insertMember(MEMBER2, HOFFSET(s1_t, b), PredType::NATIVE_INT);
dtype1.insertMember(MEMBER3, HOFFSET(s1_t, c), PredType::NATIVE_FLOAT);
// Save datatype for later
dtype1.commit(group, "Datatype1");
// Close datatype and group
dtype1.close();
group.close();
// Create a dataset
dataset = file1->createDataSet("Dataset3", PredType::STD_REF_OBJ, sid1);
// Create reference to dataset
file1->reference(&wbuf[0], "/Group1/Dataset1");
H5G_obj_t obj_type = dataset.getObjType(&wbuf[0], H5R_OBJECT);
verify_val(obj_type, H5G_DATASET, "DataSet::getObjType", __LINE__, __FILE__);
// Create reference to dataset
file1->reference(&wbuf[1], "/Group1/Dataset2");
obj_type = dataset.getObjType(&wbuf[1], H5R_OBJECT);
verify_val(obj_type, H5G_DATASET, "DataSet::getObjType", __LINE__, __FILE__);
// Create reference to group
file1->reference(&wbuf[2], "/Group1");
obj_type = dataset.getObjType(&wbuf[2], H5R_OBJECT);
verify_val(obj_type, H5G_GROUP, "DataSet::getObjType", __LINE__, __FILE__);
// Create reference to named datatype
file1->reference(&wbuf[3], "/Group1/Datatype1");
obj_type = dataset.getObjType(&wbuf[3], H5R_OBJECT);
verify_val(obj_type, H5G_TYPE, "DataSet::getObjType", __LINE__, __FILE__);
// Write selection to disk
dataset.write(wbuf, PredType::STD_REF_OBJ);
// Close disk dataspace, dataset, and file
sid1.close();
dataset.close();
delete file1;
// Re-open the file
file1 = new H5File(FILE1, H5F_ACC_RDWR);
// Open the dataset
dataset = file1->openDataSet("/Dataset3");
// Read selection from disk
dataset.read(rbuf, PredType::STD_REF_OBJ);
// Dereference dataset object by ctor, from the location where
// 'dataset' is located
DataSet dset2(dataset, &rbuf[0]);
// Check information in the referenced dataset
sid1 = dset2.getSpace();
hssize_t n_elements = sid1.getSimpleExtentNpoints();
verify_val((long)n_elements, (long)4, "DataSpace::getSimpleExtentNpoints", __LINE__, __FILE__);
// Read from disk
dset2.read(tbuf, PredType::NATIVE_UINT);
for(tu32=(unsigned *)tbuf,i=0; i<SPACE1_DIM1; i++,tu32++)
VERIFY(*tu32, (uint32_t)(i*3), "Data");
// Close dereferenced dataset
dset2.close();
// Dereference group object from the location where 'dataset' is located
group.dereference(dataset, &rbuf[2]);
// Get group's comment
H5std_string read_comment1 = group.getComment(".", 10);
verify_val(read_comment1, write_comment, "Group::getComment", __LINE__, __FILE__);
// Close group
group.close();
// Dereference group object using file to specify location
group.dereference(*file1, &rbuf[2]);
H5std_string read_comment2 = group.getComment(".", 10);
verify_val(read_comment2, write_comment, "Group::getComment", __LINE__, __FILE__);
group.close();
// Dereference group object by ctor and using dataset to specify
// location
Group new_group(dataset, &rbuf[2]);
H5std_string read_comment3 = new_group.getComment(".", 10);
verify_val(read_comment3, write_comment, "Group::getComment", __LINE__, __FILE__);
group.close();
// Dereference datatype object from the location where 'dataset'
// is located
dtype1.dereference(dataset, &rbuf[3]);
// Verify correct datatype
H5T_class_t tclass = dtype1.getClass();
verify_val(tclass, H5T_COMPOUND, "DataType::getClass", __LINE__, __FILE__);
int n_members = dtype1.getNmembers();
verify_val(n_members, 3, "DataType::getNmembers", __LINE__, __FILE__);
// Close datatype
dtype1.close();
// Dereference datatype object by ctor, using file to specify location
DataType dtype2(*file1, &rbuf[3]);
// Verify correct datatype
H5T_class_t tclass2 = dtype2.getClass();
verify_val(tclass2, H5T_COMPOUND, "DataType::getClass", __LINE__, __FILE__);
// Close datatype
dtype2.close();
// Close dataset and file
dataset.close();
file1->close();
// Free memory buffers
free(wbuf);
free(rbuf);
free(tbuf);
} // end try
catch (Exception E) {
issue_fail_msg(E.getCFuncName(), __LINE__, __FILE__, E.getCDetailMsg());
}
} // test_reference_obj()
/****************************************************************
**
** test_reference(): Main reference testing routine.
**
****************************************************************/
#ifdef __cplusplus
extern "C"
#endif
void test_reference(void)
{
// Output message about test being performed
MESSAGE(5, ("Testing References\n"));
test_reference_obj(); // Test basic object reference functionality
} // test_reference()
/****************************************************************
** Function: cleanup_reference
** Purpose: Cleanup temporary test files
** Return: none
****************************************************************/
void
cleanup_reference(void)
{
remove(FILE1.c_str());
}
|