1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
|
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.9.1"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>HDF5: Command-line Tools</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="navtree.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="resize.js"></script>
<script type="text/javascript" src="navtreedata.js"></script>
<script type="text/javascript" src="navtree.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
$(document).ready(function() { init_search(); });
/* @license-end */
</script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
<link href="hdf5doxy.css" rel="stylesheet" type="text/css">
<!-- <link href="hdf5doxy.css" rel="stylesheet" type="text/css"/>
-->
<script type="text/javascript" src="hdf5_navtree_hacks.js"></script>
</head>
<body>
<div style="background:#FFDDDD;font-size:120%;text-align:center;margin:0;padding:5px">Please, help us to better serve our user community by answering the following short survey: <a href="https://www.hdfgroup.org/website-survey/">https://www.hdfgroup.org/website-survey/</a></div>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td id="projectlogo"><img alt="Logo" src="HDFG-logo.png"/></td>
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname"><a href="https://www.hdfgroup.org">HDF5</a>
 <span id="projectnumber">1.15.0</span>
</div>
<div id="projectbrief">API Reference</div>
</td>
<td> <div id="MSearchBox" class="MSearchBoxInactive">
<span class="left">
<img id="MSearchSelect" src="search/mag_sel.svg"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
alt=""/>
<input type="text" id="MSearchField" value="Search" accesskey="S"
onfocus="searchBox.OnSearchFieldFocus(true)"
onblur="searchBox.OnSearchFieldFocus(false)"
onkeyup="searchBox.OnSearchFieldChange(event)"/>
</span><span class="right">
<a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.svg" alt=""/></a>
</span>
</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.9.1 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
/* @license-end */
</script>
</div><!-- top -->
<div id="side-nav" class="ui-resizable side-nav-resizable">
<div id="nav-tree">
<div id="nav-tree-contents">
<div id="nav-sync" class="sync"></div>
</div>
</div>
<div id="splitbar" style="-moz-user-select:none;"
class="ui-resizable-handle">
</div>
</div>
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
$(document).ready(function(){initNavTree('_view_tools_command.html',''); initResizable(); });
/* @license-end */
</script>
<div id="doc-content">
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>
<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>
<div class="PageDoc"><div class="header">
<div class="headertitle">
<div class="title">Command-line Tools </div> </div>
</div><!--header-->
<div class="contents">
<div class="textblock"><p>Navigate back: <a class="el" href="index.html">Main</a> / <a class="el" href="_getting_started.html">Getting Started with HDF5</a> </p><hr />
<h1><a class="anchor" id="secViewToolsCommandObtain"></a>
Obtain Tools and Files (Optional)</h1>
<p>Pre-built binaries for Linux and Windows are distributed within the respective HDF5 binary release packages, which can be obtained from the <a href="https://portal.hdfgroup.org/display/support/Download+HDF5">Download HDF5</a> page.</p>
<p>HDF5 files can be obtained from various places such as <a class="el" href="_h_d_f5_examples.html">HDF5 Examples</a> and <a href="http://www.hdfeos.org/">HDF-EOS and Tools and Information Center</a>. Specifically, the following examples are used in this tutorial topic: </p><ul>
<li>HDF5 Files created from compiling the <a class="el" href="_l_b_examples.html">Examples from Learning the Basics</a> </li>
<li>HDF5 Files on the <a class="el" href="_ex_a_p_i.html">Examples by API</a> page </li>
<li>NPP JPSS files, <a href="https://support.hdfgroup.org/ftp/HDF5/examples/files/tutorial/SVM01_npp_d20130524_t1255132_e1256374_b08146_c20130524192048864992_noaa_ops.h5.gz">SVM01_npp.. (gzipped)</a> and <a href="https://support.hdfgroup.org/ftp/HDF5/examples/files/tutorial/SVM09_npp_d20120229_t0849107_e0854511_b01759_c20120229145452682127_noaa_ops.h5.gz">SVM09_npp.. (gzipped)</a> </li>
<li>HDF-EOS <a href="https://support.hdfgroup.org/ftp/HDF5/examples/files/tutorial/OMI-Aura.he5">OMI-Aura file</a></li>
</ul>
<h1><a class="anchor" id="secViewToolsCommandTutor"></a>
Tutorial Topics</h1>
<p>A variety of command-line tools are included in the HDF5 binary distribution. There are tools to view, edit, convert and compare HDF5 files. This tutorial discusses the tools by their functionality. It does not cover all of the HDF5 tools.</p>
<table class="doxtable">
<tr>
<th>Tool Category </th><th>Topic </th><th>Tools Used </th></tr>
<tr>
<td><b><a class="el" href="_view_tools_view.html">Command-line Tools For Viewing HDF5 Files</a></b> </td><td><a class="el" href="_view_tools_view.html#secViewToolsViewContent">File Content and Structure</a> </td><td>h5dump and h5ls </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_view.html#secViewToolsViewDset">Datasets and Dataset Properties</a> </td><td>h5dump and h5ls </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_view.html#secViewToolsViewGrps">Groups</a> </td><td>h5dump and h5ls </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_view.html#secViewToolsViewAttr">Attributes</a> </td><td>h5dump </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_view.html#secViewToolsViewSub">Dataset Subset</a> </td><td>h5dump </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_view.html#secViewToolsViewDtypes">Datatypes</a> </td><td>h5dump </td></tr>
<tr>
<td><a class="el" href="_view_tools_edit.html">Command-line Tools For Editing HDF5 Files</a> </td><td><a class="el" href="_view_tools_edit.html#secViewToolsEditRemove">Remove Inaccessible Objects and Unused Space in a File</a> </td><td>h5repack </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_edit.html#secViewToolsEditChange">Change a Dataset's Storage Layout</a> </td><td>h5repack </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_edit.html#secViewToolsEditApply">Apply Compression Filter to a Dataset</a> </td><td>h5repack </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_edit.html#secViewToolsEditCopy">Copy Objects to Another File</a> </td><td>h5copy </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_edit.html#secViewToolsEditAdd">Add or Remove User Block from File</a> </td><td>h5jam and h5unjam </td></tr>
<tr>
<td><a class="el" href="_view_tools_convert.html">Command-line Tools For Converting HDF5 Files</a> </td><td><a class="el" href="_view_tools_convert.html#secViewToolsConvertASCII">Output HDF5 Dataset into an ASCII File (to Import into Excel and Other Applications)</a> </td><td>h5dump </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_convert.html#secViewToolsConvertBinary">Output HDF5 Dataset into Binary File</a> </td><td>h5dump </td></tr>
<tr>
<td></td><td><a class="el" href="_view_tools_convert.html#secViewToolsConvertExport">Export from h5dump and Import into HDF5</a> </td><td>h5dump and h5import </td></tr>
</table>
<hr />
<p> Navigate back: <a class="el" href="index.html">Main</a> / <a class="el" href="_getting_started.html">Getting Started with HDF5</a> </p>
</div></div><!-- contents -->
</div><!-- PageDoc -->
</div><!-- doc-content -->
<!-- start footer part -->
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
<ul>
<li class="footer">Generated by
<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.9.1 </li>
</ul>
</div>
</body>
</html>
|