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<div class="textblock"><p>Navigate back: <a class="el" href="index.html">Main</a> / <a class="el" href="_getting_started.html">Getting Started with HDF5</a> / <a class="el" href="_view_tools_command.html">Command-line Tools</a> </p><hr />
<h1><a class="anchor" id="secViewToolsViewTOC"></a>
Contents</h1>
<ul>
<li>
<a class="el" href="#secViewToolsViewContent">File Content and Structure</a> </li>
<li>
<a class="el" href="#secViewToolsViewDset">Datasets and Dataset Properties</a> </li>
<li>
<a class="el" href="#secViewToolsViewGrps">Groups</a> </li>
<li>
<a class="el" href="#secViewToolsViewAttr">Attributes</a> </li>
<li>
<a class="el" href="#secViewToolsViewSub">Dataset Subset</a> </li>
<li>
<a class="el" href="#secViewToolsViewDtypes">Datatypes</a> </li>
</ul>
<h1><a class="anchor" id="secViewToolsViewContent"></a>
File Content and Structure</h1>
<p>The h5dump and h5ls tools can both be used to view the contents of an HDF5 file. The tools are discussed below: </p><ul>
<li>
<a class="el" href="#subsecViewToolsViewContent_h5dump">h5dump</a> </li>
<li>
<a class="el" href="#subsecViewToolsViewContent_h5ls">h5ls</a> </li>
</ul>
<h2><a class="anchor" id="subsecViewToolsViewContent_h5dump"></a>
h5dump</h2>
<p>The h5dump tool dumps or displays the contents of an HDF5 file (textually). By default if you specify no options, h5dump will display the entire contents of a file. There are many h5dump options for examining specific details of a file. To see all of the available h5dump options, specify the <code style="background-color:whitesmoke;">-h</code> or <code style="background-color:whitesmoke;">–help</code> option: </p><div class="fragment"><div class="line">h5dump -h</div>
</div><!-- fragment --><p>The following h5dump options can be helpful in viewing the content and structure of a file: </p><table class="doxtable">
<tr>
<th>Option </th><th>Description </th><th>Comment </th></tr>
<tr>
<td>-n, –contents </td><td>Displays a list of the objects in a file </td><td>See <a class="el" href="#subsubsecViewToolsViewContent_h5dumpEx1">Example 1</a> </td></tr>
<tr>
<td>-n 1, –contents=1 </td><td>Displays a list of the objects and attributes in a file </td><td>See <a class="el" href="#subsubsecViewToolsViewAttr_h5dumpEx6">Example 6</a> </td></tr>
<tr>
<td>-H, –header </td><td>Displays header information only (no data) </td><td>See <a class="el" href="#subsubsecViewToolsViewContent_h5dumpEx2">Example 2</a> </td></tr>
<tr>
<td>-A 0, –onlyattr=0 </td><td>Suppresses the display of attributes </td><td>See <a class="el" href="#subsubsecViewToolsViewContent_h5dumpEx2">Example 2</a> </td></tr>
<tr>
<td>-N P, –any_path=P </td><td>Displays any object or attribute that matches path P </td><td>See <a class="el" href="#subsubsecViewToolsViewAttr_h5dumpEx6">Example 6</a> </td></tr>
</table>
<h3><a class="anchor" id="subsubsecViewToolsViewContent_h5dumpEx1"></a>
Example 1</h3>
<p>The following command displays a list of the objects in the file OMI-Aura.he5 (an HDF-EOS5 file): </p><div class="fragment"><div class="line">h5dump -n OMI-Aura.he5</div>
</div><!-- fragment --><p>As shown in the output below, the objects (groups, datasets) are listed to the left, followed by their names. You can see that this file contains two root groups, HDFEOS and HDFEOS INFORMATION: </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"OMI-Aura.he5"</span> {</div>
<div class="line">FILE_CONTENTS {</div>
<div class="line"> group /</div>
<div class="line"> group /HDFEOS</div>
<div class="line"> group /HDFEOS/ADDITIONAL</div>
<div class="line"> group /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES</div>
<div class="line"> group /HDFEOS/GRIDS</div>
<div class="line"> group /HDFEOS/GRIDS/OMI Column Amount O3</div>
<div class="line"> group /HDFEOS/GRIDS/OMI Column Amount O3/Data Fields</div>
<div class="line"> dataset /HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/ColumnAmountO3</div>
<div class="line"> dataset /HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/RadiativeCloudFraction</div>
<div class="line"> dataset /HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/SolarZenithAngle</div>
<div class="line"> dataset /HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/ViewingZenithAngle</div>
<div class="line"> group /HDFEOS INFORMATION</div>
<div class="line"> dataset /HDFEOS INFORMATION/StructMetadata.0</div>
<div class="line"> }</div>
<div class="line">}</div>
</div><!-- fragment --><h3><a class="anchor" id="subsubsecViewToolsViewContent_h5dumpEx2"></a>
Example 2</h3>
<p>The file structure of the OMI-Aura.he5 file can be seen with the following command. The -A 0 option suppresses the display of attributes: </p><div class="fragment"><div class="line">h5dump -H -A 0 OMI-Aura.he5</div>
</div><!-- fragment --><p>Output of this command is shown below: </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"OMI-Aura.he5"</span> {</div>
<div class="line">GROUP <span class="stringliteral">"/"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"HDFEOS"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"ADDITIONAL"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"FILE_ATTRIBUTES"</span> {</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> GROUP <span class="stringliteral">"GRIDS"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"OMI Column Amount O3"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"Data Fields"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"ColumnAmountO3"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> }</div>
<div class="line"> DATASET <span class="stringliteral">"RadiativeCloudFraction"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> }</div>
<div class="line"> DATASET <span class="stringliteral">"SolarZenithAngle"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> }</div>
<div class="line"> DATASET <span class="stringliteral">"ViewingZenithAngle"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> GROUP <span class="stringliteral">"HDFEOS INFORMATION"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"StructMetadata.0"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a2de5d7919fe54466b7cf6a6c0b4265fa">H5T_STRING</a> {</div>
<div class="line"> STRSIZE 32000;</div>
<div class="line"> STRPAD <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#ad2ab726f3bd28222a2ffb91c6bbc3514a23c685afc240bbac4da23b36d8fd7e13">H5T_STR_NULLTERM</a>;</div>
<div class="line"> CSET <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a03755b8370672668ddc7063add28e71aa27383e03d1cad9b4c32d8611a145d663">H5T_CSET_ASCII</a>;</div>
<div class="line"> CTYPE <a class="code hl_define" href="group___p_d_t_s.html#ga7f6b6959fefe56d2e871659110936d2d">H5T_C_S1</a>;</div>
<div class="line"> }</div>
<div class="line"> DATASPACE SCALAR</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="a_h5_tpublic_8h_html_a03755b8370672668ddc7063add28e71aa27383e03d1cad9b4c32d8611a145d663"><div class="ttname"><a href="_h5_tpublic_8h.html#a03755b8370672668ddc7063add28e71aa27383e03d1cad9b4c32d8611a145d663">H5T_CSET_ASCII</a></div><div class="ttdeci">@ H5T_CSET_ASCII</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:95</div></div>
<div class="ttc" id="a_h5_tpublic_8h_html_a071841985f647f69516dbe77d93167f2a2de5d7919fe54466b7cf6a6c0b4265fa"><div class="ttname"><a href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a2de5d7919fe54466b7cf6a6c0b4265fa">H5T_STRING</a></div><div class="ttdeci">@ H5T_STRING</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:35</div></div>
<div class="ttc" id="a_h5_tpublic_8h_html_ad2ab726f3bd28222a2ffb91c6bbc3514a23c685afc240bbac4da23b36d8fd7e13"><div class="ttname"><a href="_h5_tpublic_8h.html#ad2ab726f3bd28222a2ffb91c6bbc3514a23c685afc240bbac4da23b36d8fd7e13">H5T_STR_NULLTERM</a></div><div class="ttdeci">@ H5T_STR_NULLTERM</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:120</div></div>
<div class="ttc" id="agroup___p_d_t_i_e_e_e_html_ga994ce9ffdd2c77a9352b102a883503ea"><div class="ttname"><a href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div><div class="ttdeci">#define H5T_IEEE_F32LE</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:261</div></div>
<div class="ttc" id="agroup___p_d_t_s_html_ga7f6b6959fefe56d2e871659110936d2d"><div class="ttname"><a href="group___p_d_t_s.html#ga7f6b6959fefe56d2e871659110936d2d">H5T_C_S1</a></div><div class="ttdeci">#define H5T_C_S1</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:476</div></div>
</div><!-- fragment --><h2><a class="anchor" id="subsecViewToolsViewContent_h5ls"></a>
h5ls</h2>
<p>The h5ls tool by default just displays the objects in the root group. It will not display items in groups beneath the root group unless specified. Useful h5ls options for viewing file content and structure are: </p><table class="doxtable">
<tr>
<th>Option </th><th>Description </th><th>Comment </th></tr>
<tr>
<td>-r </td><td>Lists all groups and objects recursively </td><td>See <a class="el" href="#subsubsecViewToolsViewContent_h5lsEx3">Example 3</a> </td></tr>
<tr>
<td>-v </td><td>Generates verbose output (lists dataset properties, attributes and attribute values, but no dataset values) </td><td></td></tr>
</table>
<h3><a class="anchor" id="subsubsecViewToolsViewContent_h5lsEx3"></a>
Example 3</h3>
<p>The following command shows the contents of the HDF-EOS5 file OMI-Aura.he5. The output is similar to h5dump, except that h5ls also shows dataspace information for each dataset: </p><div class="fragment"><div class="line">h5ls -r OMI-Aura.he5</div>
</div><!-- fragment --><p>The output is shown below: </p><div class="fragment"><div class="line">/ Group</div>
<div class="line">/HDFEOS Group</div>
<div class="line">/HDFEOS/ADDITIONAL Group</div>
<div class="line">/HDFEOS/ADDITIONAL/FILE_ATTRIBUTES Group</div>
<div class="line">/HDFEOS/GRIDS Group</div>
<div class="line">/HDFEOS/GRIDS/OMI\ Column\ Amount\ O3 Group</div>
<div class="line">/HDFEOS/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields Group</div>
<div class="line">/HDFEOS/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields/ColumnAmountO3 Dataset {720, 1440}</div>
<div class="line">/HDFEOS/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields/RadiativeCloudFraction Dataset {720, 1440}</div>
<div class="line">/HDFEOS/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields/SolarZenithAngle Dataset {720, 1440}</div>
<div class="line">/HDFEOS/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields/ViewingZenithAngle Dataset {720, 1440}</div>
<div class="line">/HDFEOS\ INFORMATION Group</div>
<div class="line">/HDFEOS\ INFORMATION/StructMetadata.0 Dataset {SCALAR}</div>
</div><!-- fragment --><h1><a class="anchor" id="secViewToolsViewDset"></a>
Datasets and Dataset Properties</h1>
<p>Both h5dump and h5ls can be used to view specific datasets. </p><ul>
<li>
<a class="el" href="#subsecViewToolsViewDset_h5dump">h5dump</a> </li>
<li>
<a class="el" href="#subsecViewToolsViewDset_h5ls">h5ls</a> </li>
</ul>
<h2><a class="anchor" id="subsecViewToolsViewDset_h5dump"></a>
h5dump</h2>
<p>Useful h5dump options for examining specific datasets include: </p><table class="doxtable">
<tr>
<th>Option </th><th>Description </th><th>Comment </th></tr>
<tr>
<td>-d D, –dataset=D </td><td>Displays dataset D </td><td>See <a class="el" href="#subsubsecViewToolsViewDset_h5dumpEx4">Example 4</a> </td></tr>
<tr>
<td>-H, –header </td><td>Displays header information only </td><td>See <a class="el" href="#subsubsecViewToolsViewDset_h5dumpEx4">Example 4</a> </td></tr>
<tr>
<td>-p, –properties </td><td>Displays dataset filters, storage layout, and fill value properties </td><td>See <a class="el" href="#subsubsecViewToolsViewDset_h5dumpEx5">Example 5</a> </td></tr>
<tr>
<td>-A 0, –onlyattr=0 </td><td>Suppresses the display of attributes </td><td>See <a class="el" href="#subsubsecViewToolsViewContent_h5dumpEx2">Example 2</a> </td></tr>
<tr>
<td>-N P, –any_path=P </td><td>Displays any object or attribute that matches path P </td><td>See <a class="el" href="#subsubsecViewToolsViewAttr_h5dumpEx6">Example 6</a> </td></tr>
</table>
<h3><a class="anchor" id="subsubsecViewToolsViewDset_h5dumpEx4"></a>
Example 4</h3>
<p>A specific dataset can be viewed with <code style="background-color:whitesmoke;">h5dump</code> using the <code style="background-color:whitesmoke;">-d D</code> option and specifying the entire path and name of the dataset for <code style="background-color:whitesmoke;">D</code>. The path is important in identifying the correct dataset, as there can be multiple datasets with the same name. The path can be determined by looking at the objects in the file with <code style="background-color:whitesmoke;">h5dump -n</code>.</p>
<p>The following example uses the <code style="background-color:whitesmoke;">groups.h5</code> file that is created by the <a class="el" href="_l_b_examples.html">Examples from Learning the Basics</a> example <code style="background-color:whitesmoke;">h5_crtgrpar.c</code>. To display <code style="background-color:whitesmoke;">dset1</code> in the <code style="background-color:whitesmoke;">groups.h5</code> file below, specify dataset <code style="background-color:whitesmoke;">/MyGroup/dset1</code>. The <code style="background-color:whitesmoke;">-H</code> option is used to suppress printing of the data values:</p>
<p><em>Contents of groups.h5</em> </p><div class="fragment"><div class="line">$ h5dump -n groups.h5</div>
<div class="line">HDF5 <span class="stringliteral">"groups.h5"</span> {</div>
<div class="line">FILE_CONTENTS {</div>
<div class="line"> group /</div>
<div class="line"> group /MyGroup</div>
<div class="line"> group /MyGroup/Group_A</div>
<div class="line"> dataset /MyGroup/Group_A/dset2</div>
<div class="line"> group /MyGroup/Group_B</div>
<div class="line"> dataset /MyGroup/dset1</div>
<div class="line"> }</div>
<div class="line">}</div>
</div><!-- fragment --><p><em>Display dataset "dset1"</em> </p><div class="fragment"><div class="line">$ h5dump -d <span class="stringliteral">"/MyGroup/dset1"</span> -H groups.h5</div>
<div class="line">HDF5 <span class="stringliteral">"groups.h5"</span> {</div>
<div class="line">DATASET <span class="stringliteral">"/MyGroup/dset1"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_s_t_d.html#ga37e8a6be7ee64587c2a282b965019bb8">H5T_STD_I32BE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 3, 3 ) / ( 3, 3 ) }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="agroup___p_d_t_s_t_d_html_ga37e8a6be7ee64587c2a282b965019bb8"><div class="ttname"><a href="group___p_d_t_s_t_d.html#ga37e8a6be7ee64587c2a282b965019bb8">H5T_STD_I32BE</a></div><div class="ttdeci">#define H5T_STD_I32BE</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:305</div></div>
</div><!-- fragment --><h3><a class="anchor" id="subsubsecViewToolsViewDset_h5dumpEx5"></a>
Example 5</h3>
<p>The <code style="background-color:whitesmoke;">-p</code> option is used to examine the dataset filters, storage layout, and fill value properties of a dataset.</p>
<p>This option can be useful for checking how well compression works, or even for analyzing performance and dataset size issues related to chunking. (The smaller the chunk size, the more chunks that HDF5 has to keep track of, which increases the size of the file and potentially affects performance.)</p>
<p>In the file shown below the dataset <code style="background-color:whitesmoke;">/DS1</code> is both chunked and compressed: </p><div class="fragment"><div class="line">$ h5dump -H -p -d <span class="stringliteral">"/DS1"</span> h5ex_d_gzip.h5</div>
<div class="line">HDF5 <span class="stringliteral">"h5ex_d_gzip.h5"</span> {</div>
<div class="line">DATASET <span class="stringliteral">"/DS1"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_s_t_d.html#ga8db8c9c2bcc457f9f8526c8fcb81218b">H5T_STD_I32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 32, 64 ) / ( 32, 64 ) }</div>
<div class="line"> STORAGE_LAYOUT {</div>
<div class="line"> CHUNKED ( 4, 8 )</div>
<div class="line"> SIZE 5278 (1.552:1 COMPRESSION)</div>
<div class="line"> }</div>
<div class="line"> FILTERS {</div>
<div class="line"> COMPRESSION DEFLATE { LEVEL 9 }</div>
<div class="line"> }</div>
<div class="line"> FILLVALUE {</div>
<div class="line"> FILL_TIME <a class="code hl_enumvalue" href="_h5_dpublic_8h.html#aa39293626c4e68dd28b06c0dc84bde4aa85b225308b0a277c4dd6fed7ee465a72">H5D_FILL_TIME_IFSET</a></div>
<div class="line"> VALUE 0</div>
<div class="line"> }</div>
<div class="line"> ALLOCATION_TIME {</div>
<div class="line"> <a class="code hl_enumvalue" href="_h5_dpublic_8h.html#aab70b464cf3c5fc931dce0c4fe98b3d2ac898a96931fd3402d9e5646690c77636">H5D_ALLOC_TIME_INCR</a></div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="a_h5_dpublic_8h_html_aa39293626c4e68dd28b06c0dc84bde4aa85b225308b0a277c4dd6fed7ee465a72"><div class="ttname"><a href="_h5_dpublic_8h.html#aa39293626c4e68dd28b06c0dc84bde4aa85b225308b0a277c4dd6fed7ee465a72">H5D_FILL_TIME_IFSET</a></div><div class="ttdeci">@ H5D_FILL_TIME_IFSET</div><div class="ttdef"><b>Definition</b> H5Dpublic.h:104</div></div>
<div class="ttc" id="a_h5_dpublic_8h_html_aab70b464cf3c5fc931dce0c4fe98b3d2ac898a96931fd3402d9e5646690c77636"><div class="ttname"><a href="_h5_dpublic_8h.html#aab70b464cf3c5fc931dce0c4fe98b3d2ac898a96931fd3402d9e5646690c77636">H5D_ALLOC_TIME_INCR</a></div><div class="ttdeci">@ H5D_ALLOC_TIME_INCR</div><div class="ttdef"><b>Definition</b> H5Dpublic.h:79</div></div>
<div class="ttc" id="agroup___p_d_t_s_t_d_html_ga8db8c9c2bcc457f9f8526c8fcb81218b"><div class="ttname"><a href="group___p_d_t_s_t_d.html#ga8db8c9c2bcc457f9f8526c8fcb81218b">H5T_STD_I32LE</a></div><div class="ttdeci">#define H5T_STD_I32LE</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:310</div></div>
</div><!-- fragment --><p>You can obtain the <code style="background-color:whitesmoke;">h5ex_d_gzip.c</code> program that created this file, as well as the file created, from the <a class="el" href="_ex_a_p_i.html">Examples by API</a> page.</p>
<h2><a class="anchor" id="subsecViewToolsViewDset_h5ls"></a>
h5ls</h2>
<p>Specific datasets can be specified with <code style="background-color:whitesmoke;">h5ls</code> by simply adding the dataset path and dataset after the file name. As an example, this command displays dataset <code style="background-color:whitesmoke;">dset2</code> in the <code style="background-color:whitesmoke;">groups.h5</code> file used in <a class="el" href="#subsubsecViewToolsViewDset_h5dumpEx4">Example 4</a> : </p><div class="fragment"><div class="line">h5ls groups.h5/MyGroup/Group_A/dset2</div>
</div><!-- fragment --><p>Just the dataspace information gets displayed: </p><div class="fragment"><div class="line">dset2 Dataset {2, 10}</div>
</div><!-- fragment --><p>The following options can be used to see detailed information about a dataset. </p><table class="doxtable">
<tr>
<th>Option </th><th>Description </th></tr>
<tr>
<td>-v, –verbose </td><td>Generates verbose output (lists dataset properties, attributes and attribute values, but no dataset values) </td></tr>
<tr>
<td>-d, –data </td><td>Displays dataset values </td></tr>
</table>
<p>The output of using <code style="background-color:whitesmoke;">-v</code> is shown below: </p><div class="fragment"><div class="line">$ h5ls -v groups.h5/MyGroup/Group_A/dset2</div>
<div class="line">Opened <span class="stringliteral">"groups.h5"</span> with sec2 driver.</div>
<div class="line">dset2 Dataset {2/2, 10/10}</div>
<div class="line"> Location: 1:3840</div>
<div class="line"> Links: 1</div>
<div class="line"> Storage: 80 logical bytes, 80 allocated bytes, 100.00% utilization</div>
<div class="line"> Type: 32-bit big-endian integer</div>
</div><!-- fragment --><p>The output of using <code style="background-color:whitesmoke;">-d</code> is shown below: </p><div class="fragment"><div class="line">$ h5ls -d groups.h5/MyGroup/Group_A/dset2</div>
<div class="line">dset2 Dataset {2, 10}</div>
<div class="line"> Data:</div>
<div class="line"> (0,0) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10</div>
</div><!-- fragment --><h1><a class="anchor" id="secViewToolsViewGrps"></a>
Groups</h1>
<p>Both h5dump and h5ls can be used to view specific groups in a file. </p><ul>
<li>
<a class="el" href="#subsecViewToolsViewGrps_h5dump">h5dump</a> </li>
<li>
<a class="el" href="#subsecViewToolsViewGrps_h5ls">h5ls</a> </li>
</ul>
<h2><a class="anchor" id="subsecViewToolsViewGrps_h5dump"></a>
h5dump</h2>
<p>The <code style="background-color:whitesmoke;">h5dump</code> options that are useful for examining groups are: </p><table class="doxtable">
<tr>
<th>Option </th><th>Description </th></tr>
<tr>
<td>-g G, –group=G </td><td>Displays group G and its members </td></tr>
<tr>
<td>-H, –header </td><td>Displays header information only </td></tr>
<tr>
<td>-A 0, –onlyattr=0 </td><td>Suppresses the display of attributes </td></tr>
</table>
<p>To view the contents of the <code style="background-color:whitesmoke;">HDFEOS</code> group in the OMI file mentioned previously, you can specify the path and name of the group as follows: </p><div class="fragment"><div class="line">h5dump -g <span class="stringliteral">"/HDFEOS"</span> -H -A 0 OMI-Aura.he5</div>
</div><!-- fragment --><p>The <code style="background-color:whitesmoke;">-A 0</code> option suppresses attributes and <code style="background-color:whitesmoke;">-H</code> suppresses printing of data values: </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"OMI-Aura.he5"</span> {</div>
<div class="line">GROUP <span class="stringliteral">"/HDFEOS"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"ADDITIONAL"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"FILE_ATTRIBUTES"</span> {</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> GROUP <span class="stringliteral">"GRIDS"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"OMI Column Amount O3"</span> {</div>
<div class="line"> GROUP <span class="stringliteral">"Data Fields"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"ColumnAmountO3"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> }</div>
<div class="line"> DATASET <span class="stringliteral">"RadiativeCloudFraction"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> }</div>
<div class="line"> DATASET <span class="stringliteral">"SolarZenithAngle"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> }</div>
<div class="line"> DATASET <span class="stringliteral">"ViewingZenithAngle"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
</div><!-- fragment --><h2><a class="anchor" id="subsecViewToolsViewGrps_h5ls"></a>
h5ls</h2>
<p>You can view the contents of a group with <code style="background-color:whitesmoke;">h5ls</code>/ by specifying the group after the file name. To use <code style="background-color:whitesmoke;">h5ls</code> to view the contents of the <code style="background-color:whitesmoke;">/HDFEOS</code> group in the <code style="background-color:whitesmoke;">OMI-Aura.he5</code> file, type: </p><div class="fragment"><div class="line">h5ls -r OMI-Aura.he5/HDFEOS</div>
</div><!-- fragment --><p>The output of this command is: </p><div class="fragment"><div class="line">/ADDITIONAL Group</div>
<div class="line">/ADDITIONAL/FILE_ATTRIBUTES Group</div>
<div class="line">/GRIDS Group</div>
<div class="line">/GRIDS/OMI\ Column\ Amount\ O3 Group</div>
<div class="line">/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields Group</div>
<div class="line">/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields/ColumnAmountO3 Dataset {720, 1440}</div>
<div class="line">/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields/RadiativeCloudFraction Dataset {720, 1440}</div>
<div class="line">/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields/SolarZenithAngle Dataset {720, 1440}</div>
<div class="line">/GRIDS/OMI\ Column\ Amount\ O3/Data\ Fields/ViewingZenithAngle Dataset {720, 1440}</div>
</div><!-- fragment --><p>If you specify the <code style="background-color:whitesmoke;">-v</code> option, you can also see the attributes and properties of the datasets.</p>
<h1><a class="anchor" id="secViewToolsViewAttr"></a>
Attributes</h1>
<h2><a class="anchor" id="subsecViewToolsViewAttr_h5dump"></a>
h5dump</h2>
<p>Attributes are displayed by default if using <code style="background-color:whitesmoke;">h5dump</code>. Some files contain many attributes, which can make it difficult to examine the objects in the file. Shown below are options that can help when using <code style="background-color:whitesmoke;">h5dump</code> to work with files that have attributes.</p>
<h3><a class="anchor" id="subsubsecViewToolsViewAttr_h5dumpEx6"></a>
Example 6</h3>
<p>The <code style="background-color:whitesmoke;">-a</code> A option will display an attribute. However, the path to the attribute must be included when specifying this option. For example, to see the <code style="background-color:whitesmoke;">ScaleFactor</code> attribute in the <code style="background-color:whitesmoke;">OMI-Aura.he5</code> file, type: </p><div class="fragment"><div class="line">h5dump -a <span class="stringliteral">"/HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/SolarZenithAngle/ScaleFactor"</span> OMI-Aura.he5</div>
</div><!-- fragment --><p>This command displays: </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"OMI-Aura.he5"</span> {</div>
<div class="line">ATTRIBUTE <span class="stringliteral">"ScaleFactor"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga3f9c2185ec16632fab8c20ec7a63178e">H5T_IEEE_F64LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 1 ) / ( 1 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): 1</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="agroup___p_d_t_i_e_e_e_html_ga3f9c2185ec16632fab8c20ec7a63178e"><div class="ttname"><a href="group___p_d_t_i_e_e_e.html#ga3f9c2185ec16632fab8c20ec7a63178e">H5T_IEEE_F64LE</a></div><div class="ttdeci">#define H5T_IEEE_F64LE</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:271</div></div>
</div><!-- fragment --><p>How can you determine the path to the attribute? This can be done by looking at the file contents with the <code style="background-color:whitesmoke;">-n 1</code> option: </p><div class="fragment"><div class="line">h5dump -n 1 OMI-Aura.he5</div>
</div><!-- fragment --><p>Below is a portion of the output for this command: </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"OMI-Aura.he5"</span> {</div>
<div class="line">FILE_CONTENTS {</div>
<div class="line"> group /</div>
<div class="line"> group /HDFEOS</div>
<div class="line"> group /HDFEOS/ADDITIONAL</div>
<div class="line"> group /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/EndUTC</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/GranuleDay</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/GranuleDayOfYear</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/GranuleMonth</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/GranuleYear</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/InstrumentName</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/OrbitNumber</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/OrbitPeriod</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/PGEVersion</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/Period</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/ProcessLevel</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/StartUTC</div>
<div class="line"> attribute /HDFEOS/ADDITIONAL/FILE_ATTRIBUTES/TAI93At0zOfGranule</div>
<div class="line"> </div>
<div class="line"> ...</div>
</div><!-- fragment --><p>There can be multiple objects or attributes with the same name in a file. How can you make sure you are finding the correct object or attribute? You can first determine how many attributes there are with a specified name, and then examine the paths to them.</p>
<p>The <code style="background-color:whitesmoke;">-N</code> option can be used to display all objects or attributes with a given name. For example, there are four attributes with the name <code style="background-color:whitesmoke;">ScaleFactor</code> in the <code style="background-color:whitesmoke;">OMI-Aura.he5</code> file, as can be seen below with the <code style="background-color:whitesmoke;">-N</code> option: </p><div class="fragment"><div class="line">h5dump -N ScaleFactor OMI-Aura.he5</div>
</div><!-- fragment --><p>It outputs: </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"OMI-Aura.he5"</span> {</div>
<div class="line">ATTRIBUTE <span class="stringliteral">"ScaleFactor"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga3f9c2185ec16632fab8c20ec7a63178e">H5T_IEEE_F64LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 1 ) / ( 1 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): 1</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">ATTRIBUTE <span class="stringliteral">"ScaleFactor"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga3f9c2185ec16632fab8c20ec7a63178e">H5T_IEEE_F64LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 1 ) / ( 1 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): 1</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">ATTRIBUTE <span class="stringliteral">"ScaleFactor"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga3f9c2185ec16632fab8c20ec7a63178e">H5T_IEEE_F64LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 1 ) / ( 1 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): 1</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">ATTRIBUTE <span class="stringliteral">"ScaleFactor"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga3f9c2185ec16632fab8c20ec7a63178e">H5T_IEEE_F64LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 1 ) / ( 1 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): 1</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
</div><!-- fragment --><h2><a class="anchor" id="subsecViewToolsViewAttr_h5ls"></a>
h5ls</h2>
<p>If you include the <code style="background-color:whitesmoke;">-v</code> (verbose) option for <code style="background-color:whitesmoke;">h5ls</code>, you will see all of the attributes for the specified file, dataset or group. You cannot display individual attributes.</p>
<h1><a class="anchor" id="secViewToolsViewSub"></a>
Dataset Subset</h1>
<h2><a class="anchor" id="subsecViewToolsViewSub_h5dump"></a>
h5dump</h2>
<p>If you have a very large dataset, you may wish to subset or see just a portion of the dataset. This can be done with the following <code style="background-color:whitesmoke;">h5dump</code> options. </p><table class="doxtable">
<tr>
<th>Option </th><th>Description </th></tr>
<tr>
<td>-d D, –dataset=D </td><td>Dataset D </td></tr>
<tr>
<td>-s START, –start=START </td><td>Offset or start of subsetting selection </td></tr>
<tr>
<td>-S STRIDE, –stride=STRIDE </td><td>Stride (sampling along a dimension). The default (unspecified, or 1) selects every element along a dimension, a value of 2 selects every other element, a value of 3 selects every third element, ... </td></tr>
<tr>
<td>-c COUNT, –count=COUNT </td><td>Number of blocks to include in the selection </td></tr>
<tr>
<td>-k BLOCK, –block=BLOCK </td><td>Size of the block in a hyperslab. The default (unspecified, or 1) is for the block size to be the size of a single element. </td></tr>
</table>
<p>The <code style="background-color:whitesmoke;">START (s)</code>, <code style="background-color:whitesmoke;">STRIDE (S)</code>, <code style="background-color:whitesmoke;">COUNT (c)</code>, and <code style="background-color:whitesmoke;">BLOCK (k)</code> options define the shape and size of the selection. They are arrays with the same number of dimensions as the rank of the dataset's dataspace, and they all work together to define the selection. A change to one of these arrays can affect the others.</p>
<p>When specifying these h5dump options, a comma is used as the delimiter for each dimension in the option value. For example, with a 2-dimensional dataset, the option value is specified as "H,W", where H is the height and W is the width. If the offset is 0 for both dimensions, then <code style="background-color:whitesmoke;">START</code> would be specified as follows: </p><div class="fragment"><div class="line">-s <span class="stringliteral">"0,0"</span></div>
</div><!-- fragment --><p>There is also a shorthand way to specify these options with brackets at the end of the dataset name: </p><div class="fragment"><div class="line">-d DATASETNAME[s;S;c;k]</div>
</div><!-- fragment --><p>Multiple dimensions are separated by commas. For example, a subset for a 2-dimensional dataset would be specified as follows: </p><div class="fragment"><div class="line">-d DATASETNAME[s,s;S,S;c,c;k,k]</div>
</div><!-- fragment --><p>For a detailed understanding of how selections works, see the <a class="el" href="group___h5_s.html#ga6adfdf1b95dc108a65bf66e97d38536d" title="Selects a hyperslab region to add to the current selected region.">H5Sselect_hyperslab</a> API in the <a class="el" href="_r_m.html">HDF5 Reference Manual</a>.</p>
<p>The dataset SolarZenithAngle in the OMI-Aura.he5 file can be used to illustrate these options. This dataset is a 2-dimensional dataset of size 720 (height) x 1440 (width). Too much data will be displayed by simply viewing the specified dataset with the <code style="background-color:whitesmoke;">-d</code> option: </p><div class="fragment"><div class="line">h5dump -d <span class="stringliteral">"HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/SolarZenithAngle"</span> OMI-Aura.he5</div>
</div><!-- fragment --><p>Subsetting narrows down the output that is displayed. In the following example, the first 15x10 elements (-c "15,10") are specified, beginning with position (0,0) (-s "0,0"): </p><div class="fragment"><div class="line">h5dump -A 0 -d <span class="stringliteral">"HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/SolarZenithAngle"</span> -s <span class="stringliteral">"0,0"</span> -c <span class="stringliteral">"15,10"</span> -w 0 OMI-Aura.he5</div>
</div><!-- fragment --><p>If using the shorthand method, specify: </p><div class="fragment"><div class="line">h5dump -A 0 -d <span class="stringliteral">"HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/SolarZenithAngle[0,0;;15,10;]"</span> -w 0 OMI-Aura.he5</div>
</div><!-- fragment --><p>Where, the <code style="background-color:whitesmoke;">-d</code> option must be specified before subsetting options (if not using the shorthand method).</p>
<p>The <code style="background-color:whitesmoke;">-A 0</code> option suppresses the printing of attributes.</p>
<p>The <code style="background-color:whitesmoke;">-w 0</code> option sets the number of columns of output to the maximum allowed value (65535). This ensures that there are enough columns specified for displaying the data.</p>
<p>Either command displays: </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"OMI-Aura.he5"</span> {</div>
<div class="line">DATASET <span class="stringliteral">"HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/SolarZenithAngle"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> SUBSET {</div>
<div class="line"> START ( 0, 0 );</div>
<div class="line"> STRIDE ( 1, 1 );</div>
<div class="line"> COUNT ( 15, 10 );</div>
<div class="line"> BLOCK ( 1, 1 );</div>
<div class="line"> DATA {</div>
<div class="line"> (0,0): 79.403, 79.403, 79.403, 79.403, 79.403, 79.403, 79.403, 79.403, 79.403, 79.403,</div>
<div class="line"> (1,0): 79.071, 79.071, 79.071, 79.071, 79.071, 79.071, 79.071, 79.071, 79.071, 79.071,</div>
<div class="line"> (2,0): 78.867, 78.867, 78.867, 78.867, 78.867, 78.867, 78.867, 78.867, 78.867, 78.867,</div>
<div class="line"> (3,0): 78.632, 78.632, 78.632, 78.632, 78.632, 78.632, 78.632, 78.632, 78.632, 78.632,</div>
<div class="line"> (4,0): 78.429, 78.429, 78.429, 78.429, 78.429, 78.429, 78.429, 78.429, 78.429, 78.429,</div>
<div class="line"> (5,0): 78.225, 78.225, 78.225, 78.225, 78.225, 78.225, 78.225, 78.225, 78.225, 78.225,</div>
<div class="line"> (6,0): 78.021, 78.021, 78.021, 78.021, 78.021, 78.021, 78.021, 78.021, 78.021, 78.021,</div>
<div class="line"> (7,0): 77.715, 77.715, 77.715, 77.715, 77.715, 77.715, 77.715, 77.715, 77.715, 77.715,</div>
<div class="line"> (8,0): 77.511, 77.511, 77.511, 77.511, 77.511, 77.511, 77.511, 77.511, 77.511, 77.511,</div>
<div class="line"> (9,0): 77.658, 77.658, 77.658, 77.307, 77.307, 77.307, 77.307, 77.307, 77.307, 77.307,</div>
<div class="line"> (10,0): 77.556, 77.556, 77.556, 77.556, 77.556, 77.556, 77.556, 77.556, 77.102, 77.102,</div>
<div class="line"> (11,0): 78.408, 78.408, 78.408, 78.408, 78.408, 78.408, 78.408, 78.408, 77.102, 77.102,</div>
<div class="line"> (12,0): 76.34, 78.413, 78.413, 78.413, 78.413, 78.413, 78.413, 78.413, 78.413, 78.413,</div>
<div class="line"> (13,0): 78.107, 78.107, 78.107, 78.107, 78.107, 78.107, 78.107, 78.107, 78.107, 77.195,</div>
<div class="line"> (14,0): 78.005, 78.005, 78.005, 78.005, 78.005, 78.005, 76.991, 76.991, 76.991, 76.991</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
</div><!-- fragment --><p>What if we wish to read three rows of three elements at a time (-c "3,3"), where each element is a 2 x 3 block (-k "2,3") and we wish to begin reading from the second row (-s "1,0")?</p>
<p>You can do that with the following command: </p><div class="fragment"><div class="line">h5dump -A 0 -d <span class="stringliteral">"HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/SolarZenithAngle"</span> </div>
<div class="line"> -s <span class="stringliteral">"1,0"</span> -S <span class="stringliteral">"2,3"</span> -c <span class="stringliteral">"3,3"</span> -k <span class="stringliteral">"2,3"</span> -w 0 OMI-Aura.he5</div>
</div><!-- fragment --><p>In this case, the stride must be specified as 2 by 3 (or larger) to accommodate the reading of 2 by 3 blocks. If it is smaller, the command will fail with the error, </p><div class="fragment"><div class="line">h5dump error: wrong subset selection; blocks overlap.</div>
</div><!-- fragment --><p>The output of the above command is shown below: </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"OMI-Aura.he5"</span> {</div>
<div class="line">DATASET <span class="stringliteral">"HDFEOS/GRIDS/OMI Column Amount O3/Data Fields/SolarZenithAngle"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_i_e_e_e.html#ga994ce9ffdd2c77a9352b102a883503ea">H5T_IEEE_F32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 720, 1440 ) / ( 720, 1440 ) }</div>
<div class="line"> SUBSET {</div>
<div class="line"> START ( 1, 0 );</div>
<div class="line"> STRIDE ( 2, 3 );</div>
<div class="line"> COUNT ( 3, 3 );</div>
<div class="line"> BLOCK ( 2, 3 );</div>
<div class="line"> DATA {</div>
<div class="line"> (1,0): 79.071, 79.071, 79.071, 79.071, 79.071, 79.071, 79.071, 79.071, 79.071,</div>
<div class="line"> (2,0): 78.867, 78.867, 78.867, 78.867, 78.867, 78.867, 78.867, 78.867, 78.867,</div>
<div class="line"> (3,0): 78.632, 78.632, 78.632, 78.632, 78.632, 78.632, 78.632, 78.632, 78.632,</div>
<div class="line"> (4,0): 78.429, 78.429, 78.429, 78.429, 78.429, 78.429, 78.429, 78.429, 78.429,</div>
<div class="line"> (5,0): 78.225, 78.225, 78.225, 78.225, 78.225, 78.225, 78.225, 78.225, 78.225,</div>
<div class="line"> (6,0): 78.021, 78.021, 78.021, 78.021, 78.021, 78.021, 78.021, 78.021, 78.021</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
</div><!-- fragment --><h1><a class="anchor" id="secViewToolsViewDtypes"></a>
Datatypes</h1>
<h2><a class="anchor" id="subsecViewToolsViewDtypes_h5dump"></a>
h5dump</h2>
<p>The following datatypes are discussed, using the output of <code style="background-color:whitesmoke;">h5dump</code> with HDF5 files from the <a class="el" href="_ex_a_p_i.html">Examples by API</a> page: </p><ul>
<li>
<a class="el" href="#subsubsecViewToolsViewDtypes_array">Array</a> </li>
<li>
<a class="el" href="#subsubsecViewToolsViewDtypes_objref">Object Reference</a> </li>
<li>
<a class="el" href="#subsubsecViewToolsViewDtypes_regref">Region Reference</a> </li>
<li>
<a class="el" href="#subsubsecViewToolsViewDtypes_string">String</a> </li>
</ul>
<h3><a class="anchor" id="subsubsecViewToolsViewDtypes_array"></a>
Array</h3>
<p>Users have been confused by the difference between an Array datatype (<a class="el" href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a547a4451911e912127f300ab15113854">H5T_ARRAY</a>) and a dataset that (has a dataspace that) is an array.</p>
<p>Typically, these users want a dataset that has a simple datatype (like integer or float) that is an array, like the following dataset <code style="background-color:whitesmoke;">/DS1</code>. It has a datatype of <a class="el" href="group___p_d_t_s_t_d.html#ga8db8c9c2bcc457f9f8526c8fcb81218b">H5T_STD_I32LE</a> (32-bit Little-Endian Integer) and is a 4 by 7 array: </p><div class="fragment"><div class="line">$ h5dump h5ex_d_rdwr.h5</div>
<div class="line">HDF5 <span class="stringliteral">"h5ex_d_rdwr.h5"</span> {</div>
<div class="line">GROUP <span class="stringliteral">"/"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"DS1"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_s_t_d.html#ga8db8c9c2bcc457f9f8526c8fcb81218b">H5T_STD_I32LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 4, 7 ) / ( 4, 7 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0,0): 0, -1, -2, -3, -4, -5, -6,</div>
<div class="line"> (1,0): 0, 0, 0, 0, 0, 0, 0,</div>
<div class="line"> (2,0): 0, 1, 2, 3, 4, 5, 6,</div>
<div class="line"> (3,0): 0, 2, 4, 6, 8, 10, 12</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">} </div>
</div><!-- fragment --><p>Contrast that with the following dataset that has both an Array datatype and is an array: </p><div class="fragment"><div class="line">$ h5dump h5ex_t_array.h5</div>
<div class="line">HDF5 <span class="stringliteral">"h5ex_t_array.h5"</span> {</div>
<div class="line">GROUP <span class="stringliteral">"/"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"DS1"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a547a4451911e912127f300ab15113854">H5T_ARRAY</a> { [3][5] <a class="code hl_define" href="group___p_d_t_s_t_d.html#ga591a85b894eab3e3ab1a2ccd9b3be565">H5T_STD_I64LE</a> }</div>
<div class="line"> DATASPACE SIMPLE { ( 4 ) / ( 4 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): [ 0, 0, 0, 0, 0,</div>
<div class="line"> 0, -1, -2, -3, -4,</div>
<div class="line"> 0, -2, -4, -6, -8 ],</div>
<div class="line"> (1): [ 0, 1, 2, 3, 4,</div>
<div class="line"> 1, 1, 1, 1, 1,</div>
<div class="line"> 2, 1, 0, -1, -2 ],</div>
<div class="line"> (2): [ 0, 2, 4, 6, 8,</div>
<div class="line"> 2, 3, 4, 5, 6,</div>
<div class="line"> 4, 4, 4, 4, 4 ],</div>
<div class="line"> (3): [ 0, 3, 6, 9, 12,</div>
<div class="line"> 3, 5, 7, 9, 11,</div>
<div class="line"> 6, 7, 8, 9, 10 ]</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="a_h5_tpublic_8h_html_a071841985f647f69516dbe77d93167f2a547a4451911e912127f300ab15113854"><div class="ttname"><a href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a547a4451911e912127f300ab15113854">H5T_ARRAY</a></div><div class="ttdeci">@ H5T_ARRAY</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:42</div></div>
<div class="ttc" id="agroup___p_d_t_s_t_d_html_ga591a85b894eab3e3ab1a2ccd9b3be565"><div class="ttname"><a href="group___p_d_t_s_t_d.html#ga591a85b894eab3e3ab1a2ccd9b3be565">H5T_STD_I64LE</a></div><div class="ttdeci">#define H5T_STD_I64LE</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:320</div></div>
</div><!-- fragment --><p>In this file, dataset <code style="background-color:whitesmoke;">/DS1</code> has a datatype of </p><div class="fragment"><div class="line"><a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a547a4451911e912127f300ab15113854">H5T_ARRAY</a> { [3][5] <a class="code hl_define" href="group___p_d_t_s_t_d.html#ga591a85b894eab3e3ab1a2ccd9b3be565">H5T_STD_I64LE</a> }</div>
</div><!-- fragment --><p> and it also has a dataspace of </p><div class="fragment"><div class="line">SIMPLE { ( 4 ) / ( 4 ) }</div>
</div><!-- fragment --><p> In other words, it is an array of four elements, in which each element is a 3 by 5 array of <a class="el" href="group___p_d_t_s_t_d.html#ga591a85b894eab3e3ab1a2ccd9b3be565">H5T_STD_I64LE</a>.</p>
<p>This dataset is much more complex. Also note that subsetting cannot be done on Array datatypes.</p>
<p>See this <a href="https://portal.hdfgroup.org/display/knowledge/H5T_ARRAY+Datatype">FAQ</a> for more information on the Array datatype.</p>
<h3><a class="anchor" id="subsubsecViewToolsViewDtypes_objref"></a>
Object Reference</h3>
<p>An Object Reference is a reference to an entire object (dataset, group, or named datatype). A dataset with an Object Reference datatype consists of one or more Object References. An Object Reference dataset can be used as an index to an HDF5 file.</p>
<p>The <code style="background-color:whitesmoke;">/DS1</code> dataset in the following file (<code style="background-color:whitesmoke;">h5ex_t_objref.h5</code>) is an Object Reference dataset. It contains two references, one to group <code style="background-color:whitesmoke;">/G1</code> and the other to dataset <code style="background-color:whitesmoke;">/DS2</code>: </p><div class="fragment"><div class="line">$ h5dump h5ex_t_objref.h5</div>
<div class="line">HDF5 <span class="stringliteral">"h5ex_t_objref.h5"</span> {</div>
<div class="line">GROUP <span class="stringliteral">"/"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"DS1"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a5850e0b9353a5e7aeb615fb943d4e9cd">H5T_REFERENCE</a> { H5T_STD_REF_OBJECT }</div>
<div class="line"> DATASPACE SIMPLE { ( 2 ) / ( 2 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): GROUP 1400 /G1 , DATASET 800 /DS2</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> DATASET <span class="stringliteral">"DS2"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_s_t_d.html#ga8db8c9c2bcc457f9f8526c8fcb81218b">H5T_STD_I32LE</a></div>
<div class="line"> DATASPACE NULL</div>
<div class="line"> DATA {</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> GROUP <span class="stringliteral">"G1"</span> {</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="a_h5_tpublic_8h_html_a071841985f647f69516dbe77d93167f2a5850e0b9353a5e7aeb615fb943d4e9cd"><div class="ttname"><a href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a5850e0b9353a5e7aeb615fb943d4e9cd">H5T_REFERENCE</a></div><div class="ttdeci">@ H5T_REFERENCE</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:39</div></div>
</div><!-- fragment --><h3><a class="anchor" id="subsubsecViewToolsViewDtypes_regref"></a>
Region Reference</h3>
<p>A Region Reference is a reference to a selection within a dataset. A selection can be either individual elements or a hyperslab. In <code style="background-color:whitesmoke;">h5dump</code> you will see the name of the dataset along with the elements or slab that is selected. A dataset with a Region Reference datatype consists of one or more Region References.</p>
<p>An example of a Region Reference dataset (<code style="background-color:whitesmoke;">h5ex_t_regref.h5</code>) can be found on the <a class="el" href="_ex_a_p_i.html">Examples by API</a> page, under Datatypes. If you examine this dataset with <code style="background-color:whitesmoke;">h5dump</code> you will see that <code style="background-color:whitesmoke;">/DS1</code> is a Region Reference dataset as indicated by its datatype, highlighted in bold below: </p><div class="fragment"><div class="line">$ h5dump h5ex_t_regref.h5</div>
<div class="line">HDF5 <span class="stringliteral">"h5ex_t_regref.h5"</span> {</div>
<div class="line">GROUP <span class="stringliteral">"/"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"DS1"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a5850e0b9353a5e7aeb615fb943d4e9cd">H5T_REFERENCE</a> { <a class="code hl_define" href="group___p_d_t_s_t_d.html#gaf5cb0d5cec3d40d8b3ac27512f86895e">H5T_STD_REF_DSETREG</a> }</div>
<div class="line"> DATASPACE SIMPLE { ( 2 ) / ( 2 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> DATASET /DS2 {(0,1), (2,11), (1,0), (2,4)},</div>
<div class="line"> DATASET /DS2 {(0,0)-(0,2), (0,11)-(0,13), (2,0)-(2,2), (2,11)-(2,13)}</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line"> DATASET <span class="stringliteral">"DS2"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_s_t_d.html#gaeaa5eb139424ba27d5af8925f1aa9593">H5T_STD_I8LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 3, 16 ) / ( 3, 16 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0,0): 84, 104, 101, 32, 113, 117, 105, 99, 107, 32, 98, 114, 111, 119,</div>
<div class="line"> (0,14): 110, 0,</div>
<div class="line"> (1,0): 102, 111, 120, 32, 106, 117, 109, 112, 115, 32, 111, 118, 101,</div>
<div class="line"> (1,13): 114, 32, 0,</div>
<div class="line"> (2,0): 116, 104, 101, 32, 53, 32, 108, 97, 122, 121, 32, 100, 111, 103,</div>
<div class="line"> (2,14): 115, 0</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="agroup___p_d_t_s_t_d_html_gaeaa5eb139424ba27d5af8925f1aa9593"><div class="ttname"><a href="group___p_d_t_s_t_d.html#gaeaa5eb139424ba27d5af8925f1aa9593">H5T_STD_I8LE</a></div><div class="ttdeci">#define H5T_STD_I8LE</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:290</div></div>
<div class="ttc" id="agroup___p_d_t_s_t_d_html_gaf5cb0d5cec3d40d8b3ac27512f86895e"><div class="ttname"><a href="group___p_d_t_s_t_d.html#gaf5cb0d5cec3d40d8b3ac27512f86895e">H5T_STD_REF_DSETREG</a></div><div class="ttdeci">#define H5T_STD_REF_DSETREG</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:410</div></div>
</div><!-- fragment --><p>It contains two Region References: </p><ul>
<li>A selection of four individual elements in dataset <code style="background-color:whitesmoke;">/DS2 : (0,1), (2,11), (1,0), (2,4)</code> See the <a class="el" href="group___h5_s.html#ga2f4407dd73d0ec37e5d9e80e4382483d" title="Selects array elements to be included in the selection for a dataspace.">H5Sselect_elements</a> API in the <a class="el" href="_u_g.html">HDF5 User Guide</a> for information on selecting individual elements. </li>
<li>A selection of these blocks in dataset <code style="background-color:whitesmoke;">/DS2 : (0,0)-(0,2), (0,11)-(0,13), (2,0)-(2,2), (2,11)-(2,13)</code> See the <a class="el" href="group___h5_s.html#ga6adfdf1b95dc108a65bf66e97d38536d" title="Selects a hyperslab region to add to the current selected region.">H5Sselect_hyperslab</a> API in the <a class="el" href="_u_g.html">HDF5 User Guide</a> for how to do hyperslab selection.</li>
</ul>
<p>If you look at the code that creates the dataset (<code style="background-color:whitesmoke;">h5ex_t_regref.c</code>) you will see that the first reference is created with these calls: </p><div class="fragment"><div class="line">status = <a class="code hl_function" href="group___h5_s.html#ga2f4407dd73d0ec37e5d9e80e4382483d">H5Sselect_elements</a> (space, <a class="code hl_enumvalue" href="_h5_spublic_8h.html#a10093bab27cc5720efdab3186993da0fab90faf3dc59ecf6f28197ef471141550">H5S_SELECT_SET</a>, 4, coords[0]);</div>
<div class="line">status = <a class="code hl_function" href="group___h5_r.html#ga0ac6997b5de26b11d91a95de2869950d">H5Rcreate</a> (&wdata[0], file, DATASET2, <a class="code hl_define" href="_h5_rpublic_8h.html#a2a28c48c03a4616a02f9157fca4b2df0">H5R_DATASET_REGION</a>, space);</div>
<div class="ttc" id="a_h5_rpublic_8h_html_a2a28c48c03a4616a02f9157fca4b2df0"><div class="ttname"><a href="_h5_rpublic_8h.html#a2a28c48c03a4616a02f9157fca4b2df0">H5R_DATASET_REGION</a></div><div class="ttdeci">#define H5R_DATASET_REGION</div><div class="ttdef"><b>Definition</b> H5Rpublic.h:639</div></div>
<div class="ttc" id="a_h5_spublic_8h_html_a10093bab27cc5720efdab3186993da0fab90faf3dc59ecf6f28197ef471141550"><div class="ttname"><a href="_h5_spublic_8h.html#a10093bab27cc5720efdab3186993da0fab90faf3dc59ecf6f28197ef471141550">H5S_SELECT_SET</a></div><div class="ttdeci">@ H5S_SELECT_SET</div><div class="ttdef"><b>Definition</b> H5Spublic.h:87</div></div>
<div class="ttc" id="agroup___h5_r_html_ga0ac6997b5de26b11d91a95de2869950d"><div class="ttname"><a href="group___h5_r.html#ga0ac6997b5de26b11d91a95de2869950d">H5Rcreate</a></div><div class="ttdeci">herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, hid_t space_id)</div><div class="ttdoc">Creates a reference.</div></div>
<div class="ttc" id="agroup___h5_s_html_ga2f4407dd73d0ec37e5d9e80e4382483d"><div class="ttname"><a href="group___h5_s.html#ga2f4407dd73d0ec37e5d9e80e4382483d">H5Sselect_elements</a></div><div class="ttdeci">herr_t H5Sselect_elements(hid_t space_id, H5S_seloper_t op, size_t num_elem, const hsize_t *coord)</div><div class="ttdoc">Selects array elements to be included in the selection for a dataspace.</div></div>
</div><!-- fragment --><p>where the buffer containing the coordinates to select is: </p><div class="fragment"><div class="line">coords[4][2] = { {0, 1},</div>
<div class="line"> {2, 11},</div>
<div class="line"> {1, 0},</div>
<div class="line"> {2, 4} },</div>
</div><!-- fragment --><p>The second reference is created by calling, </p><div class="fragment"><div class="line">status = <a class="code hl_function" href="group___h5_s.html#ga6adfdf1b95dc108a65bf66e97d38536d">H5Sselect_hyperslab</a> (space, <a class="code hl_enumvalue" href="_h5_spublic_8h.html#a10093bab27cc5720efdab3186993da0fab90faf3dc59ecf6f28197ef471141550">H5S_SELECT_SET</a>, start, stride, count, block);</div>
<div class="line">status = <a class="code hl_function" href="group___h5_r.html#ga0ac6997b5de26b11d91a95de2869950d">H5Rcreate</a> (&wdata[1], file, DATASET2, <a class="code hl_define" href="_h5_rpublic_8h.html#a2a28c48c03a4616a02f9157fca4b2df0">H5R_DATASET_REGION</a>, space);</div>
<div class="ttc" id="agroup___h5_s_html_ga6adfdf1b95dc108a65bf66e97d38536d"><div class="ttname"><a href="group___h5_s.html#ga6adfdf1b95dc108a65bf66e97d38536d">H5Sselect_hyperslab</a></div><div class="ttdeci">herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[], const hsize_t stride[], const hsize_t count[], const hsize_t block[])</div><div class="ttdoc">Selects a hyperslab region to add to the current selected region.</div></div>
</div><!-- fragment --><p> where start, stride, count, and block have these values: </p><div class="fragment"><div class="line">start[2] = {0, 0},</div>
<div class="line">stride[2] = {2, 11},</div>
<div class="line">count[2] = {2, 2},</div>
<div class="line">block[2] = {1, 3};</div>
</div><!-- fragment --><p>These start, stride, count, and block values will select the elements shown in bold in the dataset: </p><div class="fragment"><div class="line">84 104 101 32 113 117 105 99 107 32 98 114 111 119 110 0</div>
<div class="line">102 111 120 32 106 117 109 112 115 32 111 118 101 114 32 0</div>
<div class="line">116 104 101 32 53 32 108 97 122 121 32 100 111 103 115 0</div>
</div><!-- fragment --><p>If you use <code style="background-color:whitesmoke;">h5dump</code> to select a subset of dataset <code style="background-color:whitesmoke;">/DS2</code> with these start, stride, count, and block values, you will see that the same elements are selected: </p><div class="fragment"><div class="line">$ h5dump -d <span class="stringliteral">"/DS2"</span> -s <span class="stringliteral">"0,0"</span> -S <span class="stringliteral">"2,11"</span> -c <span class="stringliteral">"2,2"</span> -k <span class="stringliteral">"1,3"</span> h5ex_t_regref.h5</div>
<div class="line">HDF5 <span class="stringliteral">"h5ex_t_regref.h5"</span> {</div>
<div class="line">DATASET <span class="stringliteral">"/DS2"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_define" href="group___p_d_t_s_t_d.html#gaeaa5eb139424ba27d5af8925f1aa9593">H5T_STD_I8LE</a></div>
<div class="line"> DATASPACE SIMPLE { ( 3, 16 ) / ( 3, 16 ) }</div>
<div class="line"> SUBSET {</div>
<div class="line"> START ( 0, 0 );</div>
<div class="line"> STRIDE ( 2, 11 );</div>
<div class="line"> COUNT ( 2, 2 );</div>
<div class="line"> BLOCK ( 1, 3 );</div>
<div class="line"> DATA {</div>
<div class="line"> (0,0): 84, 104, 101, 114, 111, 119,</div>
<div class="line"> (2,0): 116, 104, 101, 100, 111, 103</div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
</div><!-- fragment --><p>For more information on selections, see the tutorial topic on <a class="el" href="_l_b_dset_sub_r_w.html">Reading From or Writing To a Subset of a Dataset</a>. Also see the <a class="el" href="#secViewToolsViewSub">Dataset Subset</a> tutorial topic on using <code style="background-color:whitesmoke;">h5dump</code> to view a subset.</p>
<h3><a class="anchor" id="subsubsecViewToolsViewDtypes_string"></a>
String</h3>
<p>There are two types of string data, fixed length strings and variable length strings.</p>
<p>Below is the <code style="background-color:whitesmoke;">h5dump</code> output for two files that have the same strings written to them. In one file, the strings are fixed in length, and in the other, the strings have different sizes (and are variable in size).</p>
<p><em>Dataset of Fixed Length Strings</em> </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"h5ex_t_string.h5"</span> {</div>
<div class="line">GROUP <span class="stringliteral">"/"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"DS1"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a2de5d7919fe54466b7cf6a6c0b4265fa">H5T_STRING</a> {</div>
<div class="line"> STRSIZE 7;</div>
<div class="line"> STRPAD <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#ad2ab726f3bd28222a2ffb91c6bbc3514a3f73f8dae99444798f5efd7d2d2a5e5c">H5T_STR_SPACEPAD</a>;</div>
<div class="line"> CSET <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a03755b8370672668ddc7063add28e71aa27383e03d1cad9b4c32d8611a145d663">H5T_CSET_ASCII</a>;</div>
<div class="line"> CTYPE <a class="code hl_define" href="group___p_d_t_s.html#ga7f6b6959fefe56d2e871659110936d2d">H5T_C_S1</a>;</div>
<div class="line"> }</div>
<div class="line"> DATASPACE SIMPLE { ( 4 ) / ( 4 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): <span class="stringliteral">"Parting"</span>, <span class="stringliteral">"is such"</span>, <span class="stringliteral">"sweet "</span>, <span class="stringliteral">"sorrow."</span></div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="a_h5_tpublic_8h_html_ad2ab726f3bd28222a2ffb91c6bbc3514a3f73f8dae99444798f5efd7d2d2a5e5c"><div class="ttname"><a href="_h5_tpublic_8h.html#ad2ab726f3bd28222a2ffb91c6bbc3514a3f73f8dae99444798f5efd7d2d2a5e5c">H5T_STR_SPACEPAD</a></div><div class="ttdeci">@ H5T_STR_SPACEPAD</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:122</div></div>
</div><!-- fragment --><p><em>Dataset of Variable Length Strings</em> </p><div class="fragment"><div class="line">HDF5 <span class="stringliteral">"h5ex_t_vlstring.h5"</span> {</div>
<div class="line">GROUP <span class="stringliteral">"/"</span> {</div>
<div class="line"> DATASET <span class="stringliteral">"DS1"</span> {</div>
<div class="line"> DATATYPE <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a071841985f647f69516dbe77d93167f2a2de5d7919fe54466b7cf6a6c0b4265fa">H5T_STRING</a> {</div>
<div class="line"> STRSIZE <a class="code hl_define" href="_h5_tpublic_8h.html#a5185e14efde13b48249fe391324331bc">H5T_VARIABLE</a>;</div>
<div class="line"> STRPAD <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#ad2ab726f3bd28222a2ffb91c6bbc3514a3f73f8dae99444798f5efd7d2d2a5e5c">H5T_STR_SPACEPAD</a>;</div>
<div class="line"> CSET <a class="code hl_enumvalue" href="_h5_tpublic_8h.html#a03755b8370672668ddc7063add28e71aa27383e03d1cad9b4c32d8611a145d663">H5T_CSET_ASCII</a>;</div>
<div class="line"> CTYPE <a class="code hl_define" href="group___p_d_t_s.html#ga7f6b6959fefe56d2e871659110936d2d">H5T_C_S1</a>;</div>
<div class="line"> }</div>
<div class="line"> DATASPACE SIMPLE { ( 4 ) / ( 4 ) }</div>
<div class="line"> DATA {</div>
<div class="line"> (0): <span class="stringliteral">"Parting"</span>, <span class="stringliteral">"is such"</span>, <span class="stringliteral">"sweet"</span>, <span class="stringliteral">"sorrow."</span></div>
<div class="line"> }</div>
<div class="line"> }</div>
<div class="line">}</div>
<div class="line">}</div>
<div class="ttc" id="a_h5_tpublic_8h_html_a5185e14efde13b48249fe391324331bc"><div class="ttname"><a href="_h5_tpublic_8h.html#a5185e14efde13b48249fe391324331bc">H5T_VARIABLE</a></div><div class="ttdeci">#define H5T_VARIABLE</div><div class="ttdef"><b>Definition</b> H5Tpublic.h:207</div></div>
</div><!-- fragment --><p>You might wonder which to use. Some comments to consider are included below. </p><ul>
<li>In general, a variable length string dataset is more complex than a fixed length string. If you don't specifically need a variable length type, then just use the fixed length string. </li>
<li>A variable length dataset consists of pointers to heaps in different locations in the file. For this reason, a variable length dataset cannot be compressed. (Basically, the pointers get compressed and not the actual data!) If compression is needed, then do not use variable length types. </li>
<li>If you need to create an array of of different length strings, you can either use fixed length strings along with compression, or use a variable length string.</li>
</ul>
<hr />
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