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<html>
<head>
<title>
HDF5/H5Z API Specification
</title>

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<h1>H5Z: Filter and Compression Interface</h1>
</center>

<h2>Filter and Compression API Functions</h2>

These functions enable the user to configure new filters
for the local environment.

<table border=0 width=80%>
<tr><td valign=top>
<ul>
    <li><a href="#Compression-FilterAvail">H5Zfilter_avail</a>
</ul>
</td><td>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</td><td valign=top>
<ul>
    <li><a href="#Compression-Register">H5Zregister</a>
</ul>
</td><td>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</td><td valign=top>
<ul>
    <li><a href="#Compression-Unregister">H5Zunregister</a>
</ul>
</td></tr>
</table>

<p>
HDF5 supports a filter pipeline that provides the capability for standard 
and customized raw data processing during I/O operations.  
HDF5 is distributed with a small set of standard filters such as 
compression (gzip and a shuffling algorithm) and 
error checking (Fletcher32 checksum).
For further flexibility, the library allows a 
user application to extend the pipeline through the 
creation and registration of customized filters.
<p>
As mentioned above, one set of filters distributed with HDF5 provides 
built-in methods for raw data compression.  
The flexibility of the filter pipeline implementation enables the 
definition of additional filters by a user application.
A filter<br>
&nbsp;&mdash;&nbsp;
    is associated with a dataset when the dataset is created,<br>
&nbsp;&mdash;&nbsp;
    can be used only with chunked data (ie., datasets stored in the
    <code>H5D_CHUNKED</code> storage layout), and<br>
&nbsp;&mdash;&nbsp;
    is applied independently to each chunk of the dataset.
<p>
The HDF5 library does not support filters for contiguous datasets 
because of the difficulty of implementing random access for partial I/O. 
Compact dataset filters are not supported because it would not produce 
significant results.
<p>
See <a href="Datasets.html"><cite>The Dataset Interface (H5D)</cite></a> 
in the <cite>HDF5 User's Guide</cite> for further information regarding 
data compression.

<p>
<strong>The FORTRAN90 Interfaces:</strong>

<br>
<font size=-1>
<i>In general, each FORTRAN90 subroutine performs exactly the same task 
as the corresponding C function.  The links below go to the C function 
descriptions, which serve as general descriptions for both.  A button, 
under <strong>Non-C API(s)</strong> at the end of the C function description,
opens an external browser window displaying the FORTRAN90-specific 
information.  You will probably want to adjust the size and location of 
this external window so that both browser windows are visible and to 
facilitate moving easily between them.</i>
</font>

<table border=0 width=80%>
<tr><td valign=top>
    <ul>
    <li><a href="#Compression-FilterAvail">h5zfilter_avail_f</a>
    </ul>
</td><td>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</td><td valign=top>
    <ul>
<!--<li><a href="#Compression-Register">h5zregister_f</a>        -->
    &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;
    </ul>
</td><td>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</td><td valign=top>
    <ul>
    <li><a href="#Compression-Unregister">h5zunregister_f</a>
    </ul>
</td></tr>
</table>


<hr>
<dl>
<dt><strong>Name:</strong> <a name="Compression-Register">H5Zregister</a>
<dt><strong>Signature:</strong>
    <dd><em>herr_t</em> <code>H5Zregister</code>(<em>const H5Z_class_t</em> <code>filter_class</code>)
    )
<dt><strong>Purpose:</strong>
    <dd>Registers new filter.
<dt><strong>Description:</strong>
    <dd><code>H5Zregister</code> registers a new filter with the
      HDF5 library.  
      <p>
      Making a new filter available to an application is a two-step 
      process.  The first step is to write
      the three filter callback functions described below:
      <code>can_apply_func</code>, <code>set_local_func</code>, and
      <code>filter_func</code>.
      This call to <code>H5Zregister</code>, 
      <span class="termEmphasis">registering</span> the filter with the
      library, is the second step.  
      The <code>can_apply_func</code> and <code>set_local_func</code>
      fields can be set to <code>NULL</code> 
      if they are not required for the filter being registered.
      <p>
      <code>H5Zregister</code> accepts a single parameter, 
      the <code>filter_class</code> data structure, 
      which is defined as follows:
      <pre>
   &nbsp;   typedef struct H5Z_class_t {
   &nbsp;       H5Z_filter_t filter_id;
   &nbsp;       const char  *comment;
   &nbsp;       H5Z_can_apply_func_t can_apply_func;
   &nbsp;       H5Z_set_local_func_t set_local_func;
   &nbsp;       H5Z_func_t filter_func;            
   &nbsp;   } H5Z_class_t;
      </pre>
        
      <p>
      <code>filter_id</code> is the identifier for the new filter. 
      This is a user-defined value between 
      <code>H5Z_FILTER_RESERVED</code> and <code>H5Z_FILTER_MAX</code>, 
      both of which are defined in the HDF5 source file 
      <code>H5Zpublic.h</code>.
      <p>
      <code>comment</code> is used for debugging, 
      may contain a descriptive name for the filter, 
      and may be the null pointer. 
      <p>
      <code>can_apply_func</code>, described in detail below, 
      is a user-defined callback function which determines whether 
      the combination of the dataset creation property list values, 
      the datatype, and the dataspace represent a valid combination 
      to apply this filter to.
      <p>
      <code>set_local_func</code>, described in detail below, 
      is a user-defined callback function which sets any parameters that 
      are specific to this dataset, based on the combination of the 
      dataset creation property list values, the datatype, and the 
      dataspace.
      <p>
      <code>filter_func</code>, described in detail below, 
      is a user-defined callback function which performs the action 
      of the filter.
      <p>
      The statistics associated with a filter are not reset
      by this function; they accumulate over the life of the library.

      <p>
      <strong>The callback functions</strong> 
      <br>
      Before <code>H5Zregister</code> can link a filter into an 
      application, three callback functions must be defined 
      as described in the HDF5 Library header file <code>H5Zpublic.h</code>.

      <p>
      <u>The <i>can apply</i> callback function</u> is defined as follows:<br>
      <dir>
          <em>typedef herr_t</em> (*<code>H5Z_can_apply_func_t</code>)
          (<em>hid_t</em> <code>dcpl_id</code>,
          <em>hid_t</em> <code>type_id</code>,
          <em>hid_t</em> <code>space_id</code>)
      </dir>
      <p>
      Before a dataset is created, the <i>can apply</i> callbacks for 
      any filters used in the dataset creation property list are called
      with the dataset's dataset creation property list, <code>dcpl_id</code>,
      the dataset's datatype, <code>type_id</code>, and
      a dataspace describing a chunk, <code>space_id</code>,
      (for chunked dataset storage).
      <p>
      This callback must determine whether the combination of the 
      dataset creation property list settings, the datatype, and the 
      dataspace represent a valid combination to which to apply this filter.  
      For example, an invalid combination may involve 
      the filter not operating correctly on certain datatypes,
      on certain datatype sizes, or on certain sizes of the chunk dataspace.
      <p>
      This callback can be the <code>NULL</code> pointer, in which case 
      the library will assume that the filter can be applied to a dataset with 
      any combination of dataset creation property list values, datatypes, 
      and dataspaces.
      <p>
      The <i>can apply</i> callback function must return 
      a positive value for a valid combination, 
      zero for an invalid combination, and 
      a negative value for an error.

      <p>
      <u>The <i>set local</i> callback function</u> is defined as follows:<br>
      <dir>
          <em>typedef herr_t</em> (*<code>H5Z_set_local_func_t</code>)
          (<em>hid_t</em> <code>dcpl_id</code>,
          <em>hid_t</em> <code>type_id</code>,
          <em>hid_t</em> <code>space_id</code>)
      </dir>
      <p>
      After the <i>can apply</i> callbacks are checked for a new dataset, 
      the <i>set local</i> callback functions for any filters used in the 
      dataset creation property list are called.  
      These callbacks receive 
      <code>dcpl_id</code>, the dataset's private copy of the dataset
      creation property list passed in to <code>H5Dcreate</code> 
      (i.e. not the actual property list passed in to <code>H5Dcreate</code>);
      <code>type_id</code>, the datatype identifier passed in to 
      <code>H5Dcreate</code>, 
      which is not copied and should not be modified; and 
      <code>space_id</code>, a dataspace describing the chunk 
      (for chunked dataset storage), which should also not be modified.
      <p>
      The <i>set local</i> callback must set any filter parameters that are  
      specific to this dataset, based on the combination of the 
      dataset creation property list values, the datatype, and the dataspace.  
      For example, some filters perform different actions based on 
      different datatypes, datatype sizes, numbers of dimensions, 
      or dataspace sizes.
      <p>
      The <i>set local</i> callback may be the <code>NULL</code> pointer, 
      in which case, the library will assume that there are 
      no dataset-specific settings for this filter.
      <p>
      The <i>set local</i> callback function must return 
      a non-negative value on success and 
      a negative value for an error.

      <p>
      <u>The <i>filter operation</i> callback function</u>, 
      defining the filter's operation on the data, is defined as follows:
      <dir>
          <em>typedef size_t</em> (*<code>H5Z_func_t</code>)
          (<em>unsigned int</em> <code>flags</code>,
          <em>size_t</em> <code>cd_nelmts</code>,
          <em>const unsigned int</em> <code>cd_values[]</code>,
          <em>size_t</em> <code>nbytes</code>,
          <em>size_t *</em><code>buf_size</code>,
          <em>void **</em><code>buf</code>)
      </dir>

      <p>
      The parameters <code>flags</code>, <code>cd_nelmts</code>, 
      and <code>cd_values</code> are the same as for the function
      <a href="RM_H5P.html#Property-SetFilter"><code>H5Pset_filter</code></a>.
      The one exception is that an additional flag, 
      <code>H5Z_FLAG_REVERSE</code>, is set when 
      the filter is called as part of the input pipeline. 
      <p>
      The parameter <code>*buf</code> points to the input buffer 
      which has a size of <code>*buf_size</code> bytes,
      <code>nbytes</code> of which are valid data. 
      <p>
      The filter should perform the transformation in place if
      possible.  If the transformation cannot be done in place, 
      then the filter should allocate a new buffer with
      <code>malloc()</code> and assign it to <code>*buf</code>,
      assigning the allocated size of that buffer to
      <code>*buf_size</code>. 
      The old buffer should be freed by calling <code>free()</code>.
      <p>
      If successful, the <i>filter operation</i> callback function 
      returns the number of valid bytes of data contained in <code>*buf</code>.
      In the case of failure, the return value is <code>0</code> (zero)
      and all pointer arguments are left unchanged.
<dt><strong>Note:</strong>
    <dd>The <code>H5Zregister</code> interface is substantially revised 
      from the HDF5 Release 1.4.x series.  
      The <code>H5Z_class_t</code> struct and 
      the <i>set local</i> and <i>can apply</i> callback functions
      first appeared in HDF5 Release 1.6.
<dt><strong>Parameters:</strong>
    <dl>
        <dt><em>const H5Z_class_t</em> <code>filter_class</code>
            <dd>IN: Struct containing filter-definition information.
    </dl>
<dt><strong>Returns:</strong>
    <dd>Returns a non-negative value if successful;
        otherwise returns a negative value.
<!--
<dt><strong>Non-C API(s):</strong>
    <dd><a href="fortran/h5z_FORTRAN.html#h5zregister_f" 
        target="FortranWin"><img src="Graphics/FORTRAN.gif" border=0></a>
-->     <!--
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</dl>




<hr>
<dl>
  <dt><strong>Name:</strong> <a name="Compression-Unregister">H5Zunregister</a>
  <dt><strong>Signature:</strong>
    <dd><em>herr_t</em> <code>H5Zunregister</code>(<em>H5Z_filter_t</em> <code>filter</code>)
  <dt><strong>Purpose:</strong>
    <dd>Unregisters a filter.
  <dt><strong>Description:</strong>
    <dd><code>H5Zunregister</code> unregisters the filter 
        specified in <code>filter</code>.  
	<p>
	After a call to <code>H5Zunregister</code>, the filter
	specified in <code>filter</code> will no longer be 
	available to the application.
  <dt><strong>Parameters:</strong>
    <dl>
        <dt><em>H5Z_filter_t</em> <code>filter</code>
            <dd>IN: Identifier of the filter to be unregistered.
    </dl>
  <dt><strong>Returns:</strong>
    <dd>Returns a non-negative value if successful;
        otherwise returns a negative value.
  <dt><strong>Non-C API(s):</strong>
    <dd><a href="fortran/h5z_FORTRAN.html#h5zunregister_f" 
        target="FortranWin"><img src="Graphics/FORTRAN.gif" border=0></a>
        <!--
        <img src="Graphics/Java.gif"> 
        <img src="Graphics/C++.gif">
        -->
</dl>

<hr>
<dl>
  <dt><strong>Name:</strong> <a name="Compression-FilterAvail">H5Zfilter_avail</a>
  <dt><strong>Signature:</strong>
    <dd><em>herr_t</em> <code>H5Zfilter_avail</code>(<em>H5Z_filter_t</em> <code>filter</code>)
  <dt><strong>Purpose:</strong>
    <dd>Determines whether a filter is available.
  <dt><strong>Description:</strong>
    <dd><code>H5Zfilter_avail</code> determines whether the filter 
        specified in <code>filter</code> is available to the application.
  <dt><strong>Parameters:</strong>
    <dl>
        <dt><em>H5Z_filter_t</em> <code>filter</code>
            <dd>IN: Filter identifier.
    </dl>
  <dt><strong>Returns:</strong>
    <dd>Returns a non-negative value if successful;
        otherwise returns a negative value.
  <dt><strong>Non-C API(s):</strong>
    <dd><a href="fortran/h5z_FORTRAN.html#h5zfilter_avail_f" 
        target="FortranWin"><img src="Graphics/FORTRAN.gif" border=0></a>
        <!--
        <img src="Graphics/Java.gif"> 
        <img src="Graphics/C++.gif">
        -->
</dl>








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Describes HDF5 Release 1.6.0, July 2003
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Last modified:  10 June 2003
 
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