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<html>
<head><title>
HDF5/Tools API Specification
</title>

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<a href="index.html">HDF5 documents and links</a>&nbsp;<br>
<a href="H5.intro.html">Introduction to HDF5</a>&nbsp;<br>
<a href="H5.user.html">HDF5 User Guide</a>&nbsp;<br>
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And in this document, the 
<a href="RM_H5Front.html">HDF5 Reference Manual</a>&nbsp;&nbsp;
<br>
<a href="RM_H5.html">H5</a>&nbsp;&nbsp;
<a href="RM_H5A.html">H5A</a>&nbsp;&nbsp;
<a href="RM_H5D.html">H5D</a>&nbsp;&nbsp;
<a href="RM_H5E.html">H5E</a>&nbsp;&nbsp;
<a href="RM_H5F.html">H5F</a>&nbsp;&nbsp;
<a href="RM_H5G.html">H5G</a>&nbsp;&nbsp;
<a href="RM_H5I.html">H5I</a>&nbsp;&nbsp;
<a href="RM_H5P.html">H5P</a>&nbsp;&nbsp;
<br>
<a href="RM_H5R.html">H5R</a>&nbsp;&nbsp;
<a href="RM_H5S.html">H5S</a>&nbsp;&nbsp;
<a href="RM_H5T.html">H5T</a>&nbsp;&nbsp;
<a href="RM_H5Z.html">H5Z</a>&nbsp;&nbsp;
<a href="Tools.html">Tools</a>&nbsp;&nbsp;
<a href="PredefDTypes.html">Datatypes</a>&nbsp;&nbsp;
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<h1>HDF5 Tools</h1>
</center>

<h2>HDF5 Tool Interfaces</h2>
<p>
These tools enable the user to examine HDF5 file contents, 
to modify HDF5 file contents in a carefully prescribed manner, and
to convert files from HDF4 format to HDF5 format and vice versa.


<table border=0>
<tr><td valign=top>
<ul>
    <li><a href="#Tools-Dump">h5dump</a> -- 
        A tool for displaying HDF5 file contents
    <li><a href="#Tools-Ls">h5ls</a> -- 
        A tool for listing specified features of HDF5 file contents
    <li><a href="#Tools-Diff">h5diff</a> -- 
        A tool to identify and locate the differences between two HDF5 files 
	<em>(Beta version)</em>
    <li><a href="#Tools-Repart">h5repart</a> -- 
        A tool for repartitioning a file, creating a family of files
    <li><a href="#Tools-Import">h5import</a> -- 
        A tool for importing data into an existing or new HDF5 file
    <li><a href="#Tools-GIF2H5">gif2h5</a> -- 
        A tool for converting a GIF file to an HDF5 file
    <li><a href="#Tools-H52GIF">h52gif</a> -- 
        A tool for converting images in an HDF5 file to a GIF file
    <li><a href="#Tools-H5toh4">h5toh4</a> -- 
        A tool for converting an HDF5 file to an HDF4 file
    <li><a href="#Tools-H4toh5">h4toh5</a> -- 
        A tool for converting an HDF4 file to an HDF5 file
    <li><a href="#Tools-Perf">h5perf</a> -- 
        A tool for measuring HDF5 performance
    <li><a href="#Tools-Redeploy">h5redeploy</a> -- 
        A tool for updating HDF5 compiler tools after installing HDF5 
    <li><a href="#Tools-H5CC">h5cc</a> --
        A tool for compiling HDF5 programs written in C
    <li><a href="#Tools-H5FC">h5fc</a> --
        A tool for compiling HDF5 programs written in Fortran90
    <li><a href="#Tools-H5C++">h5c++</a> --
        A tool for compiling HDF5 programs written in C++
    <li><a href="http://hdf.ncsa.uiuc.edu/java-hdf5-html/">Java-based tools for HDF5</a> -- 
        <em>(at <code>http://hdf.ncsa.uiuc.edu/java-hdf5-html/</code>)</em>
        <br>
        Java-based tools for viewing, manipulating, and generating HDF5
        files (distributed separately)
        <br>
        Includes <code>H5view</code>, <code>H5gen</code>, Java HDF5
        Interface (JHI5), and HDF5 VisAD Data Adapter
</ul>
</td></tr>
</table>

<p>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-Dump">h5dump</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5dump
        [</code><em>OPTIONS</em><code>]</code> <em>file</em>
<dt><strong>Purpose:</strong>
    <dd>Displays HDF5 file contents.
<dt><strong>Description:</strong>
    <dd><code>h5dump</code> enables the user to examine 
        the contents of an HDF5 file and dump those contents, in human
        readable form, to an ASCII file.
        <p>
        <code>h5dump</code> dumps HDF5 file content to standard output.
        It can display the contents of the entire HDF5 file or
        selected objects, which can be groups, datasets, a subset of a 
        dataset, links, attributes, or datatypes. 
        </p>
        <p>
        The <code>--header</code> option displays object header
        information only.
        </p>
        <p>
        Names are the absolute names of the objects. <code>h5dump</code>
        displays objects in the order same as the command order. If a
        name does not start with a slash, <code>h5dump</code> begins
        searching for the specified object starting at the root group.
        </p>
        <p>
        If an object is hard linked with multiple names,
        <code>h5dump</code> displays the content of the object in the
        first occurrence. Only the link information is displayed in later
        occurrences.
        </p>
        <p>
        <code>h5dump</code> assigns a name for any unnamed datatype in
        the form of
        <code>#</code><em>oid1</em><code>:</code><em>oid2</em>, where
        <em>oid1</em> and <em>oid2</em> are the object identifiers
        assigned by the library. The unnamed types are displayed within
        the root group.
        </p>
        <p>
        Datatypes are displayed with standard type names. For example,
        if a dataset is created with <code>H5T_NATIVE_INT</code> type
        and the standard type name for integer on that machine is
        <code>H5T_STD_I32BE</code>, <code>h5dump</code> displays
        <code>H5T_STD_I32BE</code> as the type of the dataset.
        </p>
        <p>
        <code>h5dump</code> can also dump a subset of a dataset.
        This feature operates in much the same way as hyperslabs in HDF5;
        the parameters specified on the commnd line are passed to the 
        function <a href="RM_H5S.html#Dataspace-SelectHyperslab">
        <code>H5Sselect_hyperslab</code></a> and the resulting selection 
        is displayed.
        </p>
        <p>
        The <code>h5dump</code> output is described in detail in the 
        <a href="ddl.html"><cite>DDL for HDF5</cite></a>, the 
        <cite>Data Description Language</cite> document. 
        </p>
        <p>
        <em>Note</em>: It is not permissable to specify multiple
        attributes, datasets, datatypes, groups, or soft links with one
        flag. For example, one may not issue the command
          <br>
            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
            <font size=-1>WRONG:</font> &nbsp;
            <code>h5dump -a /attr1 /attr2 foo.h5</code>
          </br>
        to display both <code>/attr1</code> and <code>/attr2</code>.
        One must issue the following command:
          <br>
            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
            <font size=-1>CORRECT:</font> &nbsp;
            <code>h5dump -a /attr1 -a /attr2 foo.h5</code>
          </br>
        </p>
        <p>
        It's possible to select the file driver with which to open the
        HDF5 file by using the --filedriver (-f) command-line option.
        Acceptable values for the --filedriver option are: "sec2",
        "family", "split", "multi", and "stream". If the file driver flag
        isn't specified, then the file will be opened with each driver in
        turn and in the order specified above until one driver succeeds
        in opening the file.
        </p>

<dt><strong>XML Output:</strong>
    <dd>With the <code>--xml</code> option, <code>h5dump</code> generates
        XML output.  This output contains a complete description of the file, 
        marked up in XML.  The XML conforms to the HDF5 Document Type 
        Definition (DTD) available at
        <a href="http://hdf.ncsa.uiuc.edu/DTDs/HDF5-File.dtd">
        <code>http://hdf.ncsa.uiuc.edu/DTDs/HDF5-File.dtd</code></a>.
        <p>
        The XML output is suitable for use with other tools, including the 
        <a href="http://hdf.ncsa.uiuc.edu/java-hdf5-html">HDF5 Java Tools</a>.

<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><code>-h</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--help</code></dt>
            <dd>Print a usage message and exit.</dd>
        <dt><code>-B</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--bootblock</code></dt>
            <dd>Print the content of the boot block.<br>
                <em>(This option is not yet implemented.)</em></dd>
        <dt><code>-H</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--header</code></dt>
            <dd>Print the header only; no data is displayed.</dd>
        <dt><code>-i</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--object-ids</code></dt>
            <dd>Print the object ids.</dd>
        <dt><code>-r</code> &nbsp;&nbsp;or&nbsp;&nbsp;
              <code>--string</code></dt>
            <dd>Print 1-bytes integer datasets as ASCII.</dd>
        <dt><code>-V</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--version</code></dt>
            <dd>Print version number and exit.</dd>
        <dt><code>-a <em>P</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--attribute=<em>P</em></code></dt>
            <dd>Print the specified attribute.</dd>
        <dt><code>-d <em>P</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--dataset=<em>P</em></code></dt>
            <dd>Print the specified dataset.</dd>
        <dt><code>-f <em>D</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--filedriver=<em>D</em></code></dt>
            <dd>Specify which driver to open the file with.</dd>
        <dt><code>-g <em>P</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--group=<em>P</em></code></dt>
            <dd>Print the specified group and all members.</dd>
        <dt><code>-l <em>P</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--soft-link=<em>P</em></code></dt>
            <dd>Print the value(s) of the specified soft link.</dd>
        <dt><code>-o <em>F</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--output=<em>F</em></code></dt>
            <dd>Output raw data into file F.</dd>
        <dt><code>-t <em>T</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--datatype=<em>T</em></code></dt>
            <dd>Print the specified named datatype.</dd>
        <dt><code>-w <em>N</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--width=<em>N</em></code></dt>
            <dd>Set the number of columns of output.</dd>
        <dt><code>-x <em>U</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--xml</code></dt>
            <dd>Output XML instead of DDL.</dd>
        <dt><code>-D <em>U</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--xml-dtd=<em>U</em></code></dt>
            <dd>In XML output, refer to the DTD at <em>U</em> 
                instead of the default DTD.</dd>
        <dt><code>-s <em>L</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--start=<em>L</em></code></dt>
            <dd>Offset of start of subsetting selection.  
                <br>
                Default: the beginning of the dataset.</dd>
        <dt><code>-S <em>L</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--stride=<em>L</em></code></dt>
            <dd>Hyperslab stride.
                <br>
                Default: 1 in all dimensions.</dd>
        <dt><code>-c <em>L</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--count=<em>L</em></code></dt>
            <dd>Number of blocks to include in the selection.</dd>
        <dt><code>-k <em>L</em></code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--block=<em>L</em></code></dt>
            <dd>Size of block in hyperslab.
                <br>
                Default: 1 in all dimensions.</dd>
        <dt><code>--</code></dt>
            <dd>Indicate that all following arguments are non-options.
                E.g., to dump a file called `-f', use h5dump -- -f.</dd>
        <dt><em>file</em></dt>
            <dd>The file to be examined.</dd>
    <br><br>
        <dt>The option parameters listed above are defined as follows:
            <dd><em>D</em> -- which file driver to use in opening the
                file. Acceptable values are "sec2", "family", "split",
                "multi", and "stream". Without the file driver flag the
                file will be opened with each driver in turn and in the
                order specified above until one driver succeeds in
                opening the file.</dd>
            <dd><em>P</em> -- The full path from the root group to 
                the object</dd>
            <dd><em>T</em> -- The name of the datatype</dd>
            <dd><em>F</em> -- A filename</dd>
            <dd><em>N</em> -- An integer greater than 1</dd>
            <dd><em>L</em> -- A list of integers, the number of which is 
                equal to the number of dimensions in the dataspace being 
                queried</dd>
            <dd><em>U</em> -- A URI (as defined in 
                [<a href="http://www.ietf.org/rfc/rfc2396.txt">IETF RFC 2396</a>], 
                updated by 
                [<a href="http://www.ietf.org/rfc/rfc2732.txt">IETF RFC 2732</a>]) 
                that refers to the DTD to be used to validate the XML</dd>
    <br><br>
        <dt>Subsetting paramaters can also be expressed in a convenient
            compact form, as follows:
              <br>
              &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
              <code>--dataset="/foo/mydataset[START;STRIDE;COUNT;BLOCK]"</code>
              <br>
            All of the semicolons (<code>;</code>) are required, even when 
            a parameter value is not specified.  
            When not specified, default parameter values are used.
    </dl>
    <p>

<dt><strong>Examples:</strong>
    <ol>
       <li>Dumping the group <code>/GroupFoo/GroupBar</code> in the file
          <code>quux.h5</code>:
          <blockquote>
             <code>h5dump -g /GroupFoo/GroupBar quux.h5</code>
          </blockquote>
       <li>Dumping the dataset <code>Fnord</code> in the group
          <code>/GroupFoo/GroupBar</code> in the file <code>quux.h5</code>:
          <blockquote>
             <code>h5dump -d /GroupFoo/GroupBar/Fnord quux.h5</code>
          </blockquote>
       <li>Dumping the attribute <code>metadata</code> of the dataset
          <code>Fnord</code> which is in group
          <code>/GroupFoo/GroupBar</code> in the file <code>quux.h5</code>:
          <blockquote>
             <code>h5dump -a /GroupFoo/GroupBar/Fnord/metadata quux.h5</code>
          </blockquote>
       <li>Dumping the attribute <code>metadata</code> which is an
          attribute of the root group in the file <code>quux.h5</code>:
          <blockquote>
              <code>h5dump -a /metadata quux.h5</code>
          </blockquote>
       <li>Producing an XML listing of the file <code>bobo.h5</code>:
          <blockquote>
              <code>h5dump --xml bobo.h5 > bobo.h5.xml</code>
          </blockquote>
       <li>Dumping a subset of the dataset <code>/GroupFoo/databar/</code> 
           in the file <code>quux.h5</code>
          <blockquote>
              <code>h5dump -d /GroupFoo/databar --start="1,1" --stride="2,3" 
                           <br>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
                           --count="3,19" --block="1,1" quux.h5</code>
          </blockquote>
       <li>The same example using the short form to specify the 
           subsetting parameters:
          <blockquote>
              <code>h5dump -d "/GroupFoo/databar[1,1;2,3;3,19;1,1]" quux.h5</code>
          </blockquote>
    </ol>
<dt><strong>Current Status:</strong>
    <dd>The current version of <code>h5dump</code> displays the
        following information:
        <ul>
          <li>Group
            <ul>
               <li>group attribute (see Attribute)
               <li>group member
            </ul>
          <li>Dataset
            <ul>
               <li>dataset attribute (see Attribute)
               <li>dataset type (see Datatype)
               <li>dataset space (see Dataspace)
               <li>dataset data
            </ul>
          <li>Attribute
            <ul>
               <li>attribute type (see Datatype)
               <li>attribute space (see Dataspace)
               <li>attribute data
            </ul>
          <li>Datatype
            <ul>
               <li>integer type
                   <br>
                   - H5T_STD_I8BE, H5T_STD_I8LE, H5T_STD_I16BE, ...
               <li>floating point type
                   <br>
                   - H5T_IEEE_F32BE, H5T_IEEE_F32LE, H5T_IEEE_F64BE, ...
               <li>string type
               <li>compound type 
                   <br>
                   - named, unnamed and transient compound type
                   <br>
                   - integer, floating or string type member
               <li>opaque types
               <li>reference type
                   <br>
                   - object references 
                   <br>
                   - data regions
               <li>enum type
               <li>variable-length datatypes
                   <br>
                   - atomic types only
                   <br>
                   - scalar or single dimensional array of variable-length
                         types supported
            </ul>
          <li>Dataspace 
            <ul>
               <li>scalar and simple space
            </ul>
          <li>Soft link
          <li>Hard link
          <li>Loop detection
        </ul>
     
<dt><strong>See Also:</strong>
    <ul>
    <li>HDF5 Data Description Language syntax at
        <a href="ddl.html"><cite>DDL for HDF5</cite></a>

    <li>HDF5 XML DTD at
        <a href="http://hdf.ncsa.uiuc.edu/DTDs/HDF5-File.dtd">http://hdf.ncsa.uiuc.edu/DTDs/HDF5-File.dtd</a>

    <li>HDF5 XML information at
        <a href="http://hdf.ncsa.uiuc.edu/HDF5/XML">http://hdf.ncsa.uiuc.edu/HDF5/XML/</a>
    </ul>

</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-Ls">h5ls</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5ls
        [</code><em>OPTIONS</em><code>]</code><em>
        file</em><code> 
        [</code><em>OBJECTS...</em><code>]</code>
<dt><strong>Purpose:</strong>
    <dd>Prints information about a file or dataset.
<dt><strong>Description:</strong>
    <dd><code>h5ls</code> prints selected information about file objects 
        in the specified format.
<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><code>-h</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>-?</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--help</code>
            <dd>Print a usage message and exit.
        <dt><code>-a</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--address</code>
            <dd>Print addresses for raw data.
        <dt><code>-d</code> &nbsp;&nbsp;or&nbsp;&nbsp; <code>--data</code>
            <dd>Print the values of datasets.
        <dt><code>-e</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--errors</code>
            <dd>Show all HDF5 error reporting.
        <dt><code>-f</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--full</code>
            <dd>Print full path names instead of base names.
        <dt><code>-g</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--group</code>
            <dd>Show information about a group, not its contents.
        <dt><code>-l</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--label</code>
            <dd>Label members of compound datasets.
        <dt><code>-r</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--recursive</code>
            <dd>List all groups recursively, avoiding cycles.
        <dt><code>-s</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--string</code>
            <dd>Print 1-bytes integer datasets as ASCII.
        <dt><code>-S</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--simple</code>
            <dd>Use a machine-readable output format.
        <dt><code>-w</code><em>N</em> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--width=</code><em>N</em>
            <dd>Set the number of columns of output.
        <dt><code>-v</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--verbose</code>
            <dd>Generate more verbose output.
        <dt><code>-V</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--version</code>
            <dd>Print version number and exit.
        <dt><code>-x</code> &nbsp;&nbsp;or&nbsp;&nbsp; 
              <code>--hexdump</code>
            <dd>Show raw data in hexadecimal format.
        <dt><em>file</em>
            <dd>The file name may include a printf(3C) integer format 
                such as <code>%%05d</code> to open a file family.
        <dt><em>objects</em>
            <dd>Each object consists of an HDF5 file name optionally
                followed by a slash and an object name within the file
                (if no object is specified within the file then the
                contents of the root group are displayed). The file name
                may include a <code>printf(3C)</code> integer format such
                as "%05d" to open a file family.
    </dl>
<!--
<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
-->
</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-Diff">h5diff</a>  &nbsp;&nbsp; <em>(Beta version)</em>
<dt><strong>Syntax:</strong>
    <dd><code>h5diff </code> <em>file1</em> <em>file2</em> 
                    [<em>OPTIONS</em>]
		    [<em>object1</em> [<em>object2</em> ] ]       
<dt><strong>Purpose:</strong>
    <dd>Compares two HDF5 files and reports the differences.
<dt><strong>Description:</strong>
    <dd><code>h5diff</code> is a command line tool that compares 
        two HDF5 files, <em>file1</em> and <em>file2</em>, and 
	reports the differences between them. 
	<p>
	Optionally, <code>h5diff</code> will compare two objects 
	within these files.
	If only one object, <em>object1</em>, is specified, 
	<code>h5diff</code> will compare 
	<em>object1</em> in <em>file1</em>
	with <em>object1</em> in <em>file2</em>.
	In two objects, <em>object1</em> and <em>object2</em>, 
	are specified, <code>h5diff</code> will compare 
	<em>object1</em> in <em>file1</em>
	with <em>object2</em> in <em>file2</em>.
	These objects must be HDF5 datasets.
	<p>
	<em>object1</em> and <em>object2</em> must be expressed
	as absolute paths from the respective file's root group.
	<p>
	Additional information, with several sample cases, 
	can be found in the document 
	<a href="http://hdf.ncsa.uiuc.edu/HDF5/h5diff/h5diff_design.html">
	<cite>H5diff Examples</cite></a>.
<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><em>file1</em>
        <dt><em>file2</em>
            <dd>The HDF5 files to be compared.
        <dt><code>-h</code>
            <dd>Print all differences.
        <dt><code>-r</code>
            <dd>Print only the names of objects that differ; 
	        do not print the differences.
		These objects may be HDF5 datasets, groups, 
	        or named datatypes.
        <dt><code>-n</code> <em>count</em>
            <dd>Print difference up to <em>count</em> differences, 
	        then stop.
                <em>count</em> must be a positive integer.
        <dt><code>-d</code> <em>delta</em>
            <dd>Print only differences that are greater than the 
	        limit <em>delta</em>.
                <em>delta</em> must be a positive number.
                The comparison criterion is whether the 
		absolute value of the difference of 
		two corresponding values is greater than 
		<em>delta</em> 
		<br>(e.g., <code> |a&ndash;b|&nbsp;&gt;&nbsp;<em>delta</em></code>,
		where <code>a</code> is a value in <em>file1</em> and
		<code>b</code> is a value in <em>file2</em>).
        <dt><code>-p</code> <em>relative</em>
            <dd>Print only differences that are greater than a 
	        relative error.
                <em>relative</em> must be a positive number.
                The comparison criterion is whether the 
                absolute value of the difference <code>1</code>
		and the ratio of two corresponding values
		is greater than <em>relative</em>
		(e.g., <code>|1&ndash;(b/a)|&nbsp;&gt;&nbsp;<em>relative</em></code>
		where <code>a</code> is a value in <em>file1</em> and
		<code>b</code> is a value in <em>file2</em>).
        <dt><em>object1</em>
        <dt><em>object2</em>
            <dd>Specific object(s) within the files to be compared.
    </dl>
<dt><strong>Examples:</strong>
    <dd>The following <code>h5diff</code> call compares
        the object <code>/a/b</code> in <code>file1</code> 
        with the object <code>/a/c</code> in <code>file2</code>:<br>
        <code>&nbsp;&nbsp;&nbsp;&nbsp;h5diff file1 file2 /a/b /a/c</code>
    <dd>This <code>h5diff</code> call compares
        the object <code>/a/b</code> in <code>file1</code> 
        with the same object in <code>file2</code>:<br>
        <code>&nbsp;&nbsp;&nbsp;&nbsp;h5diff file1 file2 /a/b</code>
    <dd>And this <code>h5diff</code> call compares
        all objects in both files:<br>
        <code>&nbsp;&nbsp;&nbsp;&nbsp;h5diff file1 file2</code>
<!--
<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
-->
</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-Repart">h5repart</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5repart
        [-v] 
        [-V] 
        [-[b|m]</code><em>N</em><code>[g|m|k]]</code>
        <em>source_file
        dest_file</em>
<dt><strong>Purpose:</strong>
    <dd>Repartitions a file or family of files.
<dt><strong>Description:</strong>
    <dd><code>h5repart</code> splits a single file into a family of 
        files, joins a family of files into a single file, or copies 
        one family of files to another while changing the size of the 
        family members.  <code>h5repart</code> can also be used to 
        copy a single file to a single file with holes.
        <p>
        Sizes associated with the <code>-b</code> and <code>-m</code> 
        options may be suffixed with <code>g</code> for gigabytes, 
        <code>m</code> for megabytes, or <code>k</code> for kilobytes.
        <p>
        File family names include an integer <code>printf</code> 
        format such as <code>%d</code>.

<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><code>-v</code>
            <dd>Produce verbose output.
        <dt><code>-V</code>
            <dd>Print a version number and exit.
        <dt><code>-b</code><em>N</em>
            <dd>The I/O block size, defaults to 1kB
        <dt><code>-m</code><em>N</em>
            <dd>The destination member size or 1GB
        <dt><em>source_file</em>
            <dd>The name of the source file
        <dt><em>dest_file</em>
            <dd>The name of the destination files
    </dl>
<!--
<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
-->
</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-Import">h5import</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5import
        <em>infile</em> <em>in_options</em>
        [<em>infile</em> <em>in_options</em> <b>...</b>]
        -o <em>outfile</em>
        </code>
    <dd><code>h5import
        <em>infile</em> <em>in_options</em>
        [<em>infile</em> <em>in_options</em> <b>...</b>]
        -outfile <em>outfile</em>
        </code>
    <dd><code>h5import -h</code>
    <dd><code>h5import -help</code>
<dt><strong>Purpose:</strong>
    <dd>Imports data into an existing or new HDF5 file.
<dt><strong>Description:</strong>
    <dd><code>h5import</code> converts data 
        from one or more ASCII or binary files, <code><i>infile</i></code>,
        into the same number of HDF5 datasets 
        in the existing or new HDF5 file, <code><i>outfile</i></code>.
        Data conversion is performed in accordance with the
        user-specified type and storage properties 
        specified in <code><em>in_options</em></code>.
        <p>
        The primary objective of <code>h5import</code> is to 
        import floating point or integer data. 
        The utility's design allows for future versions that 
        accept ASCII text files and store the contents as a 
        compact array of one-dimensional strings, 
        but that capability is not implemented in HDF5 Release 1.6.

        <p>
        <b>Input data and options:</b><br>
        Input data can be provided in one of the follwing forms:
        <ul><li>As an ASCII, or plain-text, file containing either 
                floating point or integer data
            <li>As a binary file containing either 32-bit or 
                64-bit native floating point data
            <li>As a binary file containing native integer data,
                signed or unsigned and 
                8-bit, 16-bit, 32-bit, or 64-bit. 
            <li>As an ASCII, or plain-text, file containing text data.
                (This feature is not implemented in HDF5 Release 1.6.)
        </ul>
        Each input file, <code><i>infile</i></code>, 
        contains a single <em>n</em>-dimensional
        array of values of one of the above types expressed 
        in the order of fastest-changing dimensions first.
        <p>
        Floating point data in an ASCII input file must be
        expressed in the fixed floating form (e.g., 323.56)
        <code>h5import</code> is designed to accept scientific notation 
        (e.g., 3.23E+02) in an ASCII, but that is not implemented in HDF5 release 1.6.  
        <p>
        Each input file can be associated with options specifying
        the datatype and storage properties. 
        These options can be specified either as 
        <em>command line arguments</em> 
        or in a <em>configuration file</em>.
        Note that exactly one of these approaches must be used with a  
        single input file.
        <p>
        Command line arguments, best used with simple input files, 
        can be used to specify 
        the class, size, dimensions of the input data and 
        a path identifying the output dataset. 
        <p>
        The recommended means of specifying input data options
        is in a configuration file; this is also the only means of 
        specifying advanced storage features.
        See further discussion in "The configuration file" below.
        <p>
        The only required option for input data is dimension sizes;
        defaults are available for all others.
        <p>
        <code>h5import</code> will accept up to 30 input files in a single call.
        Other considerations, such as the maximum length of a command line, 
        may impose a more stringent limitation.

        <p>
        <b>Output data and options:</b><br>
        The name of the output file is specified following 
        the <code>-o</code> or <code>-output</code> option
        in <code><i>outfile</i></code>.
        The data from each input file is stored as a separate dataset
        in this output file.
        <code><i>outfile</i></code> may be an existing file.
        If it does not yet exist, <code>h5import</code> will create it.
        <p>
        Output dataset information and storage properties can be 
        specified only by means of a configuration file.
        <table width=100% border=0>
           <tr valign=top align=left><td width=30>&nbsp;</td><td>
              Dataset path
              </td><td>If the groups in the path leading to the dataset 
                   do not exist, <code>h5import</code> will create them.<br> 
                   If no group is specified, the dataset will be created
                   as a member of the root group.<br> 
                   If no dataset name is specified, the default name is 
                   <code>dataset1</code> for the first input dataset,
                   <code>dataset2</code> for the second input dataset,
                   <code>dataset3</code> for the third input dataset,
                   etc.<br>
                   <code>h5import</code> does not overwrite a pre-existing 
                   dataset of the specified or default name. 
                   When an existing dataset of a confilcting name is 
                   encountered, <code>h5import</code> quits with an error;
                   the current input file and any subsequent input files
                   are not processed.
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              Output type
              </td><td>Datatype parameters for output data
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;Output data class
              </td><td>Signed or unsigned integer or floating point
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;Output data size
              </td><td>8-, 16-, 32-, or 64-bit integer<br>
                       32- or 64-bit floating point
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;Output architecture
              </td><td><code>IEEE</code><br>
                       <code>STD</code><br>
                       <code>NATIVE</code> (Default)<br>
                   Other architectures are included in the <code>h5import</code> design 
                   but are not implemented in this release.
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;Output byte order
              </td><td>Little- or big-endian.<br>
                   Relevant only if output architecture 
                   is <code>IEEE</code>, <code>UNIX</code>, or <code>STD</code>; 
                   fixed for other architectures.
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              Dataset&nbsp;layout&nbsp;and&nbsp;storage&nbsp;&nbsp;<br>
              &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;properties
              </td><td>Denote how raw data is to be organized on the disk. 
                   If none of the following are specified, 
                   the default configuration is contiguous layout and with no compression.
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;Layout
              </td><td>Contiguous (Default)<br>
                   Chunked
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;External storage
              </td><td>Allows raw data to be stored in a non-HDF5 file or in an 
                   external HDF5 file.<br>
                   Requires contiguous layout.
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;Compressed
              </td><td>Sets the type of compression and the 
                   level to which the dataset must be compressed.<br>
                   Requires chunked layout.
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;Extendible
              </td><td>Allows the dimensions of the dataset increase over time 
                   and/or to be unlimited.<br>
                   Requires chunked layout.
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              &nbsp;&nbsp;&nbsp;&nbsp;Compressed and<br>
              &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;extendible
              </td><td>Requires chunked layout.
          </td></tr>
          <tr valign=top align=left><td width=30>&nbsp;</td><td>
              
              </td><td>&nbsp;
          </td></tr>
        </table>
        <p>

        <p>
        <b>Command-line arguments:</b><br>
        The <code>h5import</code> syntax for the command-line arguments, 
        <code><em>in_options</em></code>, is as follows:
        <table width=100% border=0>
          <tr><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
          <code>h5import <em>infile</em> -d <em>dim_list</em> 
                         [-p <em>pathname</em>] 
                         [-t <em>input_class</em>] 
                         [-s <em>input_size</em>] 
                         [<em>infile</em> ...] 
                         -o <em>outfile</em></code><br>
          or<br>
          <code>h5import <em>infile</em> -dims <em>dim_list</em> 
                         [-path <em>pathname</em>] 
                         [-type <em>input_class</em>] 
                         [-size <em>input_size</em>] 
                         [<em>infile</em> ...] 
                         -outfile <em>outfile</em></code><br>
          or<br>
          <code>h5import <em>infile</em> -c <em>config_file</em> 
                         [<em>infile</em> ...] 
                         -outfile <em>outfile</em></code>
          </td></tr>
        </table>
        Note the following:
        If the <code>-c <em>config_file</em></code> option is used with 
        an input file, no other argument can be used with that input file.
        If the <code>-c <em>config_file</em></code> option is not used with 
        an input data file, the <code>-d <em>dim_list</em></code> argument
        (or <code>-dims <em>dim_list</em></code>) 
        must be used and any combination of the remaining options may be used.
        Any arguments used must appear in <em>exactly</em> the order used 
        in the syntax declarations immediately above.

        <p>
        <b>The configuration file:</b><br>
        A configuration file is specified with the 
        <code>-c <em>config_file</em></code> option:
        <table border=0>
          <tr><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
          <code>h5import <em>infile</em> -c <em>config_file</em> 
                         [<em>infile</em> -c <em>config_file2</em> ...] 
                         -outfile <em>outfile</em></code>
          </td></tr>
        </table>
        <p>
        The configuration file is an ASCII file and must be 
        organized as "Configuration_Keyword Value" pairs, 
        with one pair on each line.
        For example, the line indicating that 
        the input data class (configuration keyword <code>INPUT-CLASS</code>) 
        is floating point in a text file (value <code>TEXTFP</code>)
        would appear as follows:<br>
        <code>&nbsp;&nbsp;&nbsp;&nbsp;INPUT-CLASS&nbsp;TEXTFP</code>
        <p>
        A configuration file may have the following keywords each 
        followed by one of the following defined values.
        One entry for each of the first two keywords, 
        <code>RANK</code> and <code>DIMENSION-SIZES</code>,
        is required; all other keywords are optional.
        
        <p>
        <table width=100% border=0>
          <tr align=left><th valign=top align=left>
          <hr>Keyword&nbsp;&nbsp;<br><code>&nbsp;&nbsp;&nbsp;&nbsp;</code>Value
            </th><th valign=top align=left><hr>Description
            </th></tr>

          <tr valign=top align=left><td>
          <hr><code>RANK&nbsp;&nbsp;</code>
            </td><td><hr>The number of dimensions in the dataset.  (Required)
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;<em>rank</em></code>
            </td><td>An integer specifying the number of dimensions in the dataset.<br>
                 Example: <code> &nbsp; 4 &nbsp; </code> for a 4-dimensional dataset.
            </td></tr>

          <tr valign=top align=left><td>
          <hr><code>DIMENSION-SIZES</code>
            </td><td><hr>Sizes of the dataset dimensions.  (Required)
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;<em>dim_sizes</em></code>
            </td><td>A string of space-separated integers
                 specifying the sizes of the dimensions in the dataset.  
                 The number of sizes in this entry must match the value in 
                 the <code>RANK</code> entry.
		 The fastest-changing dimension must be listed first.<br>
                 Example: <code> &nbsp; 4 3 4 38 &nbsp; </code> for a 38x4x3x4 dataset.
            </td></tr> 

          <tr valign=top align=left><td>
          <hr><code>PATH</code>
            </td><td><hr>Path of the output dataset.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;<em>path</em></code>
            </td><td>The full HDF5 pathname identifying the output dataset 
                 relative to the root group within the output file.<br>
                 I.e., <code><em>path</em></code> is a string consisting of 
                 optional group names, each followed by a slash,
                 and ending with a dataset name. 
                 If the groups in the path do no exist, they will be 
                 created.<br>
                 If <code>PATH</code> is not specified, the output dataset 
                 is stored as a member of the root group and the 
                 default dataset name is 
                 <code>dataset1</code> for the first input dataset,
                 <code>dataset2</code> for the second input dataset,
                 <code>dataset3</code> for the third input dataset, etc.<br>
                 Note that <code>h5import</code> does not overwrite a 
                 pre-existing dataset of the specified or default name. 
                 When an existing dataset of a confilcting name is 
                 encountered, <code>h5import</code> quits with an error;
                 the current input file and any subsequent input files
                 are not processed.<br>
                 Example: The configuration file entry
                 <table border=0>
                   <tr><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
                   <code>PATH grp1/grp2/dataset1</code>
                   </td></tr>
                 </table>
                 indicates that the output dataset <code>dataset1</code> will 
                 be written in the group <code>grp2/</code> which is in 
                 the group <code>grp1/</code>, 
                 a member of the root group in the output file.
            </td></tr> 

          <tr valign=top align=left><td>
          <hr><code>INPUT-CLASS&nbsp;&nbsp;</code>
            </td><td><hr>A string denoting the type of input data.  
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;TEXTIN</code>
            </td><td>Input is signed integer data in an ASCII file.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;TEXTUIN</code>
            </td><td>Input is unsigned integer data in an ASCII file.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;TEXTFP</code>
            </td><td>Input is floating point data in fixed notation (e.g., 325.34) 
                 in an ASCII file.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;TEXTFPE</code>
            </td><td>Input is floating point data in scientific notation (e.g., 3.2534E+02)  
                 in an ASCII file.<br>
                 (Not implemented in this release.)
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;IN</code>
            </td><td>Input is signed integer data in a binary file.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;UIN</code>
            </td><td>Input is unsigned integer data in a binary file.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;FP</code>
            </td><td>Input is floating point data in a binary file. (Default)
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;STR</code>
            </td><td>Input is character data in an ASCII file.
                 With this value, the configuration keywords
                 <code>RANK</code>, <code>DIMENSION-SIZES</code>, 
                 <code>OUTPUT-CLASS</code>, <code>OUTPUT-SIZE</code>, 
                 <code>OUTPUT-ARCHITECTURE</code>, and <code>OUTPUT-BYTE-ORDER</code> 
                 will be ignored.<br>
                 (Not implemented in this release.)
          </td></tr>
          
          <tr  valign=top align=left><td>
          <hr><code>INPUT-SIZE</code>
            </td><td><hr>An integer denoting the size of the input data, in bits.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;8</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;16</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;32</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;64</code>
            </td><td>For signed and unsigned integer data:
                  <code>TEXTIN</code>, <code>TEXTUIN</code>, 
                  <code>IN</code>, or <code>UIN</code>.
                  (Default: <code> 32</code>)
          </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;32</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;64</code>
            </td><td>For floating point data:
                  <code>TEXTFP</code>, <code>TEXTFPE</code>, 
                  or <code>FP</code>.
                  (Default: <code> 32</code>)
          </td></tr>

          <tr valign=top align=left><td>
          <hr><code>OUTPUT-CLASS&nbsp;&nbsp;</code>
            </td><td><hr>A string denoting the type of output data.  
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;IN</code>
            </td><td>Output is signed integer data.<br>
                 (Default if <code>INPUT-CLASS</code> is 
                 <code>IN</code> or <code>TEXTIN</code>)
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;UIN</code>
            </td><td>Output is unsigned integer data.<br>
                 (Default if <code>INPUT-CLASS</code> is 
                 <code>UIN</code> or <code>TEXTUIN</code>)
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;FP</code>
            </td><td>Output is floating point data.<br>
                 (Default if <code>INPUT-CLASS</code> is not specified or is 
                 <code>FP</code>, <code>TEXTFP</code>, or <code>TEXTFPE</code>)
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;STR</code>
            </td><td>Output is character data, 
                 to be written as a 1-dimensional array of strings.<br>
                 (Default if <code>INPUT-CLASS</code> is <code>STR</code>)<br>
                 (Not implemented in this release.)
          </td></tr>
          
          <tr  valign=top align=left><td>
          <hr><code>OUTPUT-SIZE</code>
            </td><td><hr>An integer denoting the size of the output data, in bits.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;8</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;16</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;32</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;64</code>
            </td><td>For signed and unsigned integer data: 
                  <code>IN</code> or <code>UIN</code>.
                  (Default: Same as <code>INPUT-SIZE</code>, else <code> 32</code>)
          </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;32</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;64</code>
            </td><td>For floating point data:
                  <code>FP</code>.
                  (Default: Same as <code>INPUT-SIZE</code>, else <code> 32</code>)
          </td></tr>

          <tr valign=top align=left><td>
          <hr><code>OUTPUT-ARCHITECTURE</code>
            </td><td><hr>A string denoting the type of output architecture. 
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;NATIVE</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;STD</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;IEEE</code><br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;INTEL</code> *<br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;CRAY</code> *<br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;MIPS</code> *<br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;ALPHA</code> *<br>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;UNIX</code> *
            </td><td>See the "Predefined Atomic Types" section 
                 in the "HDF5 Datatypes" chapter 
                 of the <cite>HDF5 User's Guide</cite> 
                 for a discussion of these architectures.<br>
                 Values marked with an asterisk (*) are not implemented in this release.<br>
                 (Default: <code>NATIVE</code>)
            </td></tr> 
          
          <tr valign=top align=left><td>
          <hr><code>OUTPUT-BYTE-ORDER</code>
            </td><td><hr>A string denoting the output byte order.  
                 This entry is ignored if the <code>OUTPUT-ARCHITECTURE</code> 
                 is not specified or if it is not specified as <code>IEEE</code>, 
                 <code>UNIX</code>, or <code>STD</code>.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;BE</code>
            </td><td>Big-endian.  (Default)
            </td></tr> 
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;LE</code>
            </td><td>Little-endian.
            </td></tr> 

          <tr valign=top align=left><td colspan="2">
                <hr>The following options are disabled by default, making
                the default storage properties no chunking, no compression,
                no external storage, and no extensible dimensions.
            </td></tr> 

          <tr valign=top align=left><td>
          <hr><code>CHUNKED-DIMENSION-SIZES</code><br>
            </td><td><hr>Dimension sizes of the chunk for chunked output data.  
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;<em>chunk_dims</em></code>
            </td><td>A string of space-separated integers specifying the 
                     dimension sizes of the chunk for chunked output data.
                     The number of dimensions must correspond to the value
                     of <code>RANK</code>.<br>
                     The presence of this field indicates that the 
                     output dataset is to be stored in chunked layout; 
                     if this configuration field is absent, 
                     the dataset will be stored in contiguous layout.
            </td></tr> 

          <tr valign=top align=left><td>
          <hr><code>COMPRESSION-TYPE</code>
            </td><td><hr>Type of compression to be used with chunked storage.  
                 Requires that <code>CHUNKED-DIMENSION-SIZES</code> 
                 be specified.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;GZIP</code>
            </td><td>Gzip compression.<br>
                 Othe compression algorithms are not implemented 
                 in this release of <code>h5import</code>.
            </td></tr> 

          <tr valign=top align=left><td>
          <hr><code>COMPRESSION-PARAM</code>
            </td><td><hr>Compression level.  
                 Required if <code>COMPRESSION-TYPE</code> is specified.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;1</code> through <code>9</code>
            </td><td>Gzip compression levels: 
                     <code>1</code> will result in the fastest compression
                     while <code>9</code> will result in the 
                     best compression ratio.<br>
                     (Default: 6.  The default gzip compression level is 6; 
                     not all compression methods will have a default level.)
            </td></tr> 

          <tr valign=top align=left><td>
          <hr><code>EXTERNAL-STORAGE</code>
            </td><td><hr>Name of an external file in which to create the output dataset.  
                 Cannot be used with <code>CHUNKED-DIMENSIONS-SIZES</code>, 
                 <code>COMPRESSION-TYPE</code>, OR <code>MAXIMUM-DIMENSIONS</code>.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;<i>external_file</i>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</code>
            <!-- THE EXTRA NON-BREAKING SPACES AT THE END OF THE PRECEDING LINE    -->
            <!-- ARE PADDING SPACES TO ENSURE THE PROPER FORMATTING OF THIS TABLE. -->
            <!--                  DO NOT REMOVE THEM!!!!!!!!!!!!!                  -->
            </td><td>A string specifying the name of an external file.
            </td></tr> 

          <tr valign=top align=left><td>
          <hr><code>MAXIMUM-DIMENSIONS</code>
            </td><td><hr>Maximum sizes of all dimensions.  
                 Requires that <code>CHUNKED-DIMENSION-SIZES</code> be specified.
            </td></tr>
          <tr valign=top align=left><td>
          <code>&nbsp;&nbsp;&nbsp;&nbsp;<em>max_dims</em></code>
            </td><td>A string of space-separated integers specifying the 
                     maximum size of each dimension of the output dataset.
                     A value of <code>-1</code> for any dimension implies  
                     unlimited size for that particular dimension.<br>
                     The number of dimensions must correspond to the value
                     of <code>RANK</code>.<br>
            </td></tr> 

          <tr valign=top align=left><td><hr></td><td><hr></td></tr>
        </table>

        <p>
        <b>The <code>help</code> option:</b><br>
        The help option, expressed as one of 
        <table width=100% border=0>
          <tr><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
          <code>h5import -h</code><br>
          or<br>
          <code>h5import -help</code><br>
          </td></tr>
        <tr><td colspan="2">prints the <code>h5import</code> usage summary</td></tr>
          <tr><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
          <code>
          h5import -h[elp], OR<br>
          h5import &lt;infile&gt; &lt;options&gt; 
                   [&lt;infile&gt; &lt;options&gt;...] 
                    -o[utfile] &lt;outfile&gt;</code>
          </td></tr>
        <tr><td colspan="2">then exits.</td></tr>
        </table>
        <p>
        
<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><code>infile(s)</code>
            <dd>Name of the Input file(s).
        <dt><code>in_options</code>
            <dd>Input options.  Note that while only the <code>-dims</code> argument 
                is required, arguments must used in the order in which they are listed below.
              <dl>
              <dt><code>-d <em>dim_list</em></code>
              <dt><code>-dims <em>dim_list</em></code>
                <dd>Input data dimensions.
                    <code><em>dim_list</em></code> is a string of 
                    comma-separated numbers with no spaces 
                    describing the dimensions of the input data.
                    For example, a 50 x 100 2-dimensional array would be 
                    specified as <code>-dims 50,100</code>.<br>
                    Required argument: if no configuration  file is used, 
                    this command-line argument is mandatory.
              <dt><code>-p <em>pathname</em></code>
              <dt><code>-pathname <em>pathname</em></code>
                <dd><code><em>pathname</em></code> is a string consisting of 
                    one or more strings separated by slashes (<code>/</code>) 
                    specifying the path of the dataset in the output file. 
                    If the groups in the path do no exist, they will be 
                    created.<br>
                    Optional argument: if not specified, 
                    the default path is 
                    <code>dataset1</code> for the first input dataset,
                    <code>dataset2</code> for the second input dataset,
                    <code>dataset3</code> for the third input dataset,
                    etc.<br>
                    <code>h5import</code> does not overwrite a pre-existing 
                    dataset of the specified or default name. 
                    When an existing dataset of a confilcting name is 
                    encountered, <code>h5import</code> quits with an error;
                    the current input file and any subsequent input files
                    are not processed.
              <dt><code>-t <em>input_class</em></code>
              <dt><code>-type <em>input_class</em></code>
                <dd><code><em>input_class</em></code> specifies the class of the 
                    input data and determines the class of the output data.<br>
                    Valid values are as defined in the Keyword/Values table
                    in the section "The configuration file" above.<br>
                    Optional argument: if not specified, 
                    the default value is <code>FP</code>.
              <dt><code>-s <em>input_size</em></code>
              <dt><code>-size <em>input_size</em></code>
                <dd><code><em>input_size</em></code> specifies the size in bits 
                    of the input data and determines the size of the output data.<br>
                    Valid values for signed or unsigned integers are 
                    <code>8</code>, <code>16</code>, <code>32</code>, and <code>64</code>.<br>
                    Valid values for floating point data are 
                    <code>32</code> and <code>64</code>.<br>
                    Optional argument: if not specified, 
                    the default value is <code>32</code>.
              <dt><code>-c <em>config_file</em></code>
                <dd><code><em>config_file</em></code> specifies a 
                    configuration file.<br>
                    This argument replaces all other arguments except  
                    <code><em>infile</em></code> and 
                    <code>-o <em>outfile</em></code>
              </dl>
        <dt><code>outfile</code>
            <dd>Name of the HDF5 output file.
    </dl>

<dt><strong>Examples:</strong>
    <dd><b>Using command-line arguments:</b>
        <table width=100% border=0>
          <tr><td colspan=2>
               <code>h5import infile -dims 2,3,4 -type TEXTIN -size 32 -o out1</code>
          </td></tr><tr><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
               This command creates a file <code>out1</code> containing 
               a single 2x3x4 32-bit integer dataset. 
               Since no pathname is specified, the dataset is stored 
               in <code>out1</code> as <code>/dataset1</code>.
          </td></tr><tr><td colspan=2>
               <code>h5import infile -dims 20,50 -path bin1/dset1 -type FP -size 64 -o out2</code>
          </td></tr><tr><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
               This command creates a file <code>out2</code> containing 
               a single a 20x50 64-bit floating point dataset. 
               The dataset is stored in <code>out2</code> as <code>/bin1/dset1</code>.
          </td></tr>
        </table>

    <dd><b>Sample configuration files:</b><br>
        The following configuration file specifies the following:<br>
        &ndash; The input data is a 5x2x4 floating point array in 
                an ASCII file.<br>
        &ndash; The output dataset will be saved in chunked layout, 
                with chunk dimension sizes of 2x2x2.<br>
        &ndash; The output datatype will be 64-bit floating point, 
                little-endian, IEEE.<br>
        &ndash; The output dataset will be stored in 
                <code><em>outfile</em></code> 
                at <code>/work/h5/pkamat/First-set</code>.<br>
        &ndash; The maximum dimension sizes of the output dataset 
                will be 8x8x(unlimited).
        <pre>
            PATH work/h5/pkamat/First-set
            INPUT-CLASS TEXTFP
            RANK 3
            DIMENSION-SIZES 5 2 4
            OUTPUT-CLASS FP
            OUTPUT-SIZE 64
            OUTPUT-ARCHITECTURE IEEE
            OUTPUT-BYTE-ORDER LE
            CHUNKED-DIMENSION-SIZES 2 2 2 
            MAXIMUM-DIMENSIONS 8 8 -1
        </pre>

        The next configuration file specifies the following:<br>
        &ndash; The input data is a 6x3x5x2x4 integer array in 
                a binary file.<br>
        &ndash; The output dataset will be saved in chunked layout, 
                with chunk dimension sizes of 2x2x2x2x2.<br>
        &ndash; The output datatype will be 32-bit integer in 
                <code>NATIVE</code> format 
                (as the output architecure is not specified).<br>
        &ndash; The output dataset will be compressed using Gzip compression 
                with a compression level of 7.<br>
        &ndash; The output dataset will be stored in 
                <code><em>outfile</em></code> at <code>/Second-set</code>.
        <pre>
            PATH Second-set
            INPUT-CLASS IN
            RANK 5
            DIMENSION-SIZES 6 3 5 2 4
            OUTPUT-CLASS IN
            OUTPUT-SIZE 32
            CHUNKED-DIMENSION-SIZES 2 2 2 2 2
            COMPRESSION-TYPE GZIP
            COMPRESSION-PARAM 7
        </pre>


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<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
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</dl>




<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-GIF2H5">gif2h5</a>
<dt><strong>Syntax:</strong>
    <dd><code>gif2h5</code>
        <em>gif_file</em> <em>h5_file</em>
<dt><strong>Purpose:</strong>
    <dd>Converts a GIF file to an HDF5 file.
<dt><strong>Description:</strong>
    <dd><code>gif2h5</code> accepts as input the GIF file <em>gif_file</em>
        and produces the HDF5 file <em>h5_file</em> as output.
        
<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><em>gif_file</em>
            <dd>The name of the input GIF file
        <dt><em>h5_file</em>
            <dd>The name of the output HDF5 file
    </dl>
<!--
<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
-->
</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-H52GIF">h52gif</a>
<dt><strong>Syntax:</strong>
    <dd><code>h52gif</code>
        <em>h5_file</em> <em>gif_file</em>
        <code>-i</code> <em>h5_image</em>
        <code>[-p</code> <em>h5_palette</em><code>]</code>
<dt><strong>Purpose:</strong>
    <dd>Converts an HDF5 file to a GIF file.
<dt><strong>Description:</strong>
    <dd><code>h52gif</code> accepts as input the HDF5 file <em>h5_file</em>
        and the names of images and associated palettes within that file 
        as input and produces the GIF file <em>gif_file</em>, 
        containing those images, as output.
        <p>
        <code>h52gif</code> expects <em>at least</em> 
        one <em>h5_image</em>. 
        You may repeat 
        <br>
                &nbsp;&nbsp;&nbsp;&nbsp;
                <code>-i</code> <em>h5_image</em>
                <code>[-p</code> <em>h5_palette</em><code>]</code>
        <br>
        up to 50 times, for a maximum of 50 images.
        
<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><em>h5_file</em>
            <dd>The name of the input HDF5 file
        <dt><em>gif_file</em>
            <dd>The name of the output GIF file
        <dt><code>-i</code> <em>h5_image</em>
            <dd>Image option, specifying the name of an HDF5 image or 
                dataset containing an image to be converted
        <dt><code>-p</code> <em>h5_palette</em>
            <dd>Palette option, specifying the name of an HDF5 dataset 
                containing a palette to be used in an image conversion
    </dl>
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<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
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</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-H5toh4">h5toh4</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5toh4 -h</code><br>
        <code>h5toh4 </code><em>
            h5file
            h4file</em><br>
        <code>h5toh4 </code><em>
            h5file</em><br>
        <code>h5toh4 -m </code><em>
            h5file1
            h5file2
            h5file3</em> ...
<dt><strong>Purpose:</strong>
    <dd>Converts an HDF5 file into an HDF4 file.
<dt><strong>Description:</strong>
    <dd><code>h5toh4</code> is an HDF5 utility which reads 
        an HDF5 file, <em>h5file</em>, and converts all 
        supported objects and pathways to produce an HDF4 file, 
        <em>h4file</em>.  If <em>h4file</em> already exists, 
        it will be replaced.
        <p>
        If only one file name is given, the name must end in 
        <code>.h5</code> and is assumed to represent the 
        HDF5 input file.  <code>h5toh4</code> replaces the 
        <code>.h5</code> suffix with <code>.hdf</code> to form 
        the name of the resulting HDF4 file and proceeds as above.  
        If a file with the name of the intended HDF4 file already 
        exists, <code>h5toh4</code> exits with an error without 
        changing the contents of any file.
        <p>
        The <code>-m</code> option allows multiple HDF5 file 
        arguments.  Each file name is treated the same as the 
        single file name case above.
        <p>
        The <code>-h</code> option causes the following
        syntax summary to be displayed:
        <pre>              h5toh4 file.h5 file.hdf
              h5toh4 file.h5
              h5toh4 -m file1.h5 file2.h5 ...</pre>
        
        <p>

        The following HDF5 objects occurring in an HDF5 file are 
        converted to HDF4 objects in the HDF4 file:

        <ul>
          <li>HDF5 group objects are converted into HDF4 Vgroup 
              objects.  HDF5 hardlinks and softlinks pointing to 
              objects are converted to HDF4 Vgroup references.
          <li>HDF5 dataset objects of integer datatype are 
              converted into HDF4 SDS objects.  These datasets 
              may have up to 32 fixed dimensions.  
              The slowest varying dimension may be extendable.  
              8-bit, 16-bit, and 32-bit integer datatypes are 
              supported.
          <li>HDF5 dataset objects of floating point datatype 
              are converted into HDF4 SDS objects.  
              These datasets may have up to 32 fixed dimensions.  
              The slowest varying dimension may be extendable.  
              32-bit and 64-bit floating point datatypes are 
              supported.
          <li>HDF5 dataset objects of single dimension and 
              compound datatype are converted into HDF4 Vdata 
              objects. The length of that single dimension may 
              be fixed or extendable.  The members of the 
              compound datatype are constrained to be no more 
              than rank 4.
          <li>HDF5 dataset objects of single dimension and fixed length string
              datatype are converted into HDF4 Vdata objects.  The HDF4 Vdata 
              is a single field whose order is the length of the HDF5 string 
              type.  The number of records of the Vdata is the length of the 
              single dimension which may be fixed or extendable.
        </ul>

        Other objects are not converted and are not recorded
        in the resulting <em>h4file</em>.
        <p>
        Attributes associated with any of the supported HDF5 
        objects are carried over to the HDF4 objects.  
        Attributes may be of integer, floating point, or fixed length 
        string datatype and they may have up to 32 fixed dimensions.
        <p>
        All datatypes are converted to big-endian.  
        Floating point datatypes are converted to IEEE format.
        

<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><code>-h</code>
            <dd>Displays a syntax summary.
        <dt><code>-m</code>
            <dd>Converts multiple HDF5 files to multiple HDF4 files.
        <dt><em>h5file</em>
            <dd>The HDF5 file to be converted.
        <dt><em>h4file</em>
            <dd>The HDF4 file to be created.
    </dl>
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<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
-->
</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-H4toh5">h4toh5</a>
<dt><strong>Syntax:</strong>
    <dd><code>h4toh5 -h</code><br>
        <code>h4toh5 </code><em>
            h4file
            h5file</em><br>
        <code>h4toh5 </code><em>
            h4file</em><br>
        <!--  currently no -m option
        <code>h4toh5 -m </code><em>
            h4file1
            h4file2
            h4file3</em> ...
        -->
<dt><strong>Purpose:</strong>
    <dd>Converts an HDF4 file to an HDF5 file.
<dt><strong>Description:</strong>
    <dd><code>h4toh5</code> is a file conversion utility that reads 
        an HDF4 file, <em>h4file</em> (<code>input.hdf</code> for example),
        and writes an HDF5 file, <em>h5file</em> (<code>output.h5</code>
        for example), containing the same data.
        <p>
        If no output file <em>h5file</em> is specified, 
        <code>h4toh5</code> uses the input filename to designate
        the output file, replacing the extension <code>.hdf</code>
        with <code>.h5</code>.
        For example, if the input file <code>scheme3.hdf</code> is 
        specified with no output filename, <code>h4toh5</code> will 
        name the output file <code>scheme3.h5</code>.
        <p>
        <!--  currently no -m option
        The <code>-m</code> option allows multiple HDF5 file 
        arguments.  Each file name is treated the same as the 
        single file name case above.
        <p>
        -->
        The <code>-h</code> option causes a syntax summary 
        similar to the following to be displayed:
        <pre>              h4toh5 inputfile.hdf outputfile.h5
              h5toh4 inputfile.hdf                    <!--  currently no -m option
              h5toh4 -m inputfile1.hdf inputfile2.hdf ...  --> </pre>
        <p>
        Each object in the HDF4 file is converted to an equivalent 
        HDF5 object, according to the mapping described in
        <a href="ADGuide/H4toH5Mapping.pdf" target=ExternalWinA>
        <cite>Mapping HDF4 Objects to HDF5 Objects</cite></a>.
        (If this mapping changes between HDF5 Library releases, a more up-to-date
        version may be available at
        <a href="http://hdf.ncsa.uiuc.edu/HDF5/papers/h4toh5/H4-to-H5MappingGuidelines.pdf" target=ExternalWinB>
        <cite>Mapping HDF4 Objects to HDF5 Objects</cite> on the HDF FTP server</a>.)
        <p>
        In this inital version, <code>h4toh5</code> converts the following 
        HDF4 objects:
        <center>
        <table width=75% border=0>
          <tr><th width=40% valign=top align=left>
            HDF4 Object
            </td><th width=60% valign=top align=left>
            Resulting HDF5 Object
          </td></tr>
          <tr><td width=40% valign=top align=left>
            SDS
            </td><td width=60% valign=top align=left>
            Dataset
          </td></tr>
          <tr><td width=40% valign=top align=left>
            GR, RI8, and RI24 image
            </td><td width=60% valign=top align=left>
            Dataset 
          </td></tr>
          <tr><td width=40% valign=top align=left>
            Vdata
            </td><td width=60% valign=top align=left>
            Dataset
          </td></tr>
          <tr><td width=40% valign=top align=left>
            Vgroup
            </td><td width=60% valign=top align=left>
            Group
          </td></tr>
          <tr><td width=40% valign=top align=left>
            Annotation
            </td><td width=60% valign=top align=left>
            Attribute
          </td></tr>
          <tr><td width=40% valign=top align=left>
            Palette
            </td><td width=60% valign=top align=left>
            Dataset
          </td></tr>
        </table>
        </center>
<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><code>-h</code>
            <dd>Displays a syntax summary.
        <!--  currently no -m option
        <dt><code>-m</code>
            <dd>Converts multiple HDF4 files to multiple HDF5 files.
        -->
        <dt><em>h4file</em>
            <dd>The HDF4 file to be converted.
        <dt><em>h5file</em>
            <dd>The HDF5 file to be created.
    </dl>
<!--
<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
-->
</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-Perf">h5perf</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5perf </code>[<code>-h </code>|<code> --help</code>]
    <dd><code>h5perf </code>[<em>options</em>]
<!--
        [<code>-a</code> <em>size</em> | <code>--align=</code><em>size</em>]
        [<code>-A</code> <em>api_list</em> | <code>--api=</code><em>api_list</em>]
        [<code>-B</code> <em>size</em> | <code>--block-size=</code><em>size</em>]
        [<code>-c</code> | <code>--chunk</code>]
        [<code>-C</code> | <code>--collective</code>]
        [<code>-d</code> <em>N</em> | <code>--num-dsets</code><em>N</em>]
        [<code>-D</code> <em>debug_flags</em> | <code>--debug=</code><em>debug_flags</em>]
        [<code>-e</code> <em>size</em> | <code>--num-bytes=</code><em>size</em>]
        [<code>-F</code> <em>N</em> | <code>--num-files=</code><em>N</em>]
        [<code>-i</code> <em>N</em> | <code>--num-iterations=</code><em>N</em>]
        [<code>-I</code> | <code>--interleaved</code>]
        [<code>-m</code> | <code>--mpi-posix</code>]
        [<code>-n</code> | <code>--no-fill</code>]
        [<code>-o</code> <em>file</em> | <code> --output=</code><em>file</em>]
        [<code>-p</code> <em>N</em> | <code>--min-num-processes=</code><em>N</em>]
        [<code>-P</code> <em>N</em> | <code>--max-num-processes=</code><em>N</em>]
        [<code>-T</code> <em>size</em> | <code>--threshold=</code><em>size</em>]
        [<code>-w</code> | <code>--write-only</code>]
        [<code>-x</code> <em>size</em> | <code>--min-xfer-size=</code><em>size</em>]
        [<code>-X</code> <em>size</em> | <code>--max-xfer-size=</code>size<em></em>]
-->

<dt><strong>Purpose:</strong>
    <dd>Tests Parallel HDF5 performance.
<dt><strong>Description:</strong>
    <dd><code>h5perf</code> provides tools for testing the performance
        of the Parallel HDF5 library.
        <p>
	The following environment variables have the following 
	effects on <code>H5perf</code> behavior:
	<table border=0>
	  <tr align="left" valign="top"><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
	    <code>HDF5_NOCLEANUP</code></td><td>
	    If set, <code>h5perf</code> does not remove data files. 
	    (Default: Remove)</td></tr>
	  <tr align="left" valign="top"><td>&nbsp;</td><td>
	    <code>HDF5_MPI_INFO</code></td><td>
	    Must be set to a string containing a list of semi-colon separated 
	    key=value pairs for the MPI <code>INFO</code> object.<br>
	    Example:</td></tr>
	  <tr align="left" valign="top"><td>&nbsp;</td><td>
	    <code>HDF5_PARAPREFIX&nbsp;&nbsp;</code></td><td>
	    Sets the prefix for paralllel output data files.</td></tr>
	</table>
<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt>These terms are used as follows in  this section: 
           <table border="0">
             <tr align="left" valign="top"><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
               <em>file&nbsp;&nbsp;</em></td><td>
               A filename</td></tr>
             <tr align="left" valign="top"><td>&nbsp;</td><td>
               <em>size</em></td><td>
               A size specifier, expressed as an integer greater than or equal 
               to 0 (zero) followed by a size indicator:<br>
               &nbsp;&nbsp;&nbsp;&nbsp;<code>K </code> for kilobytes (1024 bytes)<br>
               &nbsp;&nbsp;&nbsp;&nbsp;<code>M </code> for megabytes (1048576 bytes)<br>
               &nbsp;&nbsp;&nbsp;&nbsp;<code>G </code> for gigabytes (1073741824 bytes)<br>
               Example: <code>37M</code> specifies 37 megabytes or 38797312 bytes.</td></tr>
             <tr align="left" valign="top"><td>&nbsp;</td><td>
               <em>N</em></td><td>
               An integer greater than or equal to 0 (zero)</td></tr>
           </table>
        <p>
        <dt><code>-h</code>, <code>--help</code>
            <dd>Prints a usage message and exits.
        <dt><code>-a</code> <em>size</em>, <code>--align=</code><em>size</em>
            <dd>Specifies the alignment of objects in the HDF5 file. 
	        (Default: 1)
        <dt><code>-A</code> <em>api_list</em>, <code>--api=</code><em>api_list</em>
            <dd>Specifies which APIs to test.  
	        <em>api_list</em> is a comma-separated list with the 
		following valid values:
		<table border="0">
		  <tr align="left" valign="top"><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
		    <code>phdf5&nbsp;&nbsp;</code></td><td>Parallel HDF5</td></tr>
		  <tr align="left" valign="top"><td>&nbsp;</td><td>
		    <code>mpiio</code></td><td>MPI-I/O</td></tr>
		  <tr align="left" valign="top"><td>&nbsp;</td><td>
		    <code>posix</code></td><td>POSIX</td></tr>
		</table>
		(Default: All APIs)<br><br>
		Example, <code>--api=mpiio,phdf5</code> specifies that the
		MPI I/O and parallel HDf5 APIs are to be monitored.<br><br>
        <dt><code>-B</code> <em>size</em>, <code>--block-size=</code><em>size</em>
            <dd>Specifies the block size within the transfer buffer.
		(Default: 128K)<br><br>
		Block size versus transfer buffer size:
                The <em>transfer buffer size</em> is the size of a 
		buffer in memory.  The data in that buffer is broken 
	        into <em>block size</em> pieces and written to the 
		file.<br><br>
		Transfer block size is set by the 
		<code>-x</code> (or <code>--min-xfer-size</code>) and 
		<code>-X</code> (or <code>--max-xfer-size</code>)
		options.<br>
		The pattern in which the blocks 
                are written to the file is described in the discussion 
		of the <code>-I</code> (or <code>--interleaved</code>) 
		option.<br><br>
        <dt><code>-c</code>, <code>--chunk</code>
            <dd>Creates HDF5 datasets in chunked layout.
		(Default: Off)
        <dt><code>-C</code>, <code>--collective</code>
            <dd>Use collective I/O for the MPI I/O and Parallel HDF5 APIs.<br>
		(Default: Off, i.e., independent I/O)<br><br>
		If this option is set and the MPI-I/O and PHDF5 APIs
                are in  use, all the blocks in each transfer buffer 
		will be written at once with an MPI derived type.
		<br><br>
        <dt><code>-d</code> <em>N</em>, <code>--num-dsets</code><em>N</em>
            <dd>Sets the number of datasets per file.
		(Default: <code>1</code>)
        <dt><code>-D</code> <em>debug_flags</em>, <code>--debug=</code><em>debug_flags</em>
            <dd>Sets the debugging level.
	        <em>debug_flags</em> is a comma-separated list of 
		debugging flags with the following valid values:
		<table border="0">
		  <tr align="left" valign="top"><td>&nbsp;&nbsp;&nbsp;&nbsp;</td><td>
		    <code>1&nbsp;&nbsp;</code></td><td>Minimal debugging</td></tr>
		  <tr align="left" valign="top"><td>&nbsp;</td><td>
		    <code>2</code></td><td>Moderate debugging (&ldquo;not quite everything&rdquo;)</td></tr>
		  <tr align="left" valign="top"><td>&nbsp;</td><td>
		    <code>3</code></td><td>Extensive debugging (&ldquo;everything&rdquo;)</td></tr>
		  <tr align="left" valign="top"><td>&nbsp;</td><td>
		    <code>4</code></td><td>All possible debugging (&ldquo;the kitchen sink&rdquo;)</td></tr>
		  <tr align="left" valign="top"><td>&nbsp;</td><td>
		    <code>r</code></td><td>Raw data I/O throughput information</td></tr>
		  <tr align="left" valign="top"><td>&nbsp;</td><td>
		    <code>t</code></td><td>Times, in additions to throughputs</td></tr>
		  <tr align="left" valign="top"><td>&nbsp;</td><td>
		    <code>v</code></td><td>Verify data correctness</td></tr>
		</table>
 		(Default: No debugging)<br><br>
		Example: <code>--debug=2,r,t</code> specifies to 
		run a moderate level of debugging 
		while collecting raw data I/O throughput information 
		and verifying the correctness of the data.<br><br>
       <dt><code>-e</code> <em>size</em>, <code>--num-bytes=</code><em>size</em>
            <dd>Specifies the number of bytes per process per dataset.
		(Default: <code>256K</code>)
        <dt><code>-F</code> <em>N</em>, <code>--num-files=</code><em>N</em>
            <dd>Specifies the number of files.
		(Default: <code>1</code>)
        <dt><code>-i</code> <em>N</em>, <code>--num-iterations=</code><em>N</em>
            <dd>Sets the number of iterations to perform.
		(Default: <code>1</code>)
        <dt><code>-I</code>, <code>--interleaved</code>
            <dd>Sets interleaved block I/O.<br>
	        (Default: Contiguous block I/O)<br><br>
		Interleaved vs. Contiguous blocks
		in a parallel environment:<br>
		When contiguous blocks are written to a dataset, 
		the dataset is divided into <em>m</em> regions, 
		where <em>m</em> is the number of processes writing 
		separate portions of the dataset.  Each process 
		then writes data to its own region.
		When interleaved blocks are written to a dataset, 
		space for the first block of the first process is 
		allocated in the dataset, then space is allocated 
		for the first block of the second process, etc., 
		until space has been allocated for the first block 
		of each process.  Space is then allocated for 
		the second block of the first process, 
		the second block of the second process, etc.<br><br>
                For example, in the case of a 4 process run 
		with 1M bytes-per-process, 256K transfer buffer size, 
                and 64KB block size, 16 <em>contiguous</em> blocks 
                per process would be written to the file in the 
	        manner<br>
                <code>&nbsp;&nbsp;&nbsp;&nbsp;1111111111111111222222222222222233333333333333334444444444444444</code><br>
                while 16 interleaved blocks per process would be 
		written to the file as
                <code>&nbsp;&nbsp;&nbsp;&nbsp;1234123412341234123412341234123412341234123412341234123412341234</code><br>
                If collective I/O is turned on, all of the four 
		blocks per transfer buffer will be written in 
		one collective I/O call.<br><br>
        <dt><code>-m</code>, <code>--mpi-posix</code>
            <dd>Sets use of MPI-posix driver for HDF5 I/O.
	        (Default: MPI-I/O driver)
        <dt><code>-n</code>, <code>--no-fill</code>
            <dd>Specifies to not write fill values to HDF5 datasets.
	        This option is supported only in HDF5 Release v1.6 or later.<br>
	        (Default: Off, i.e., write fill values)
        <dt><code>-o</code> <em>file</em>, <code> --output=</code><em>file</em>
            <dd>Sets the output file for raw data to <em>file</em>.
	        (Default: None)
        <dt><code>-p</code> <em>N</em>, <code>--min-num-processes=</code><em>N</em>
            <dd>Sets the minimum number of processes to be used.
	        (Default: <code>1</code>)
        <dt><code>-P</code> <em>N</em>, <code>--max-num-processes=</code><em>N</em>
            <dd>Sets the maximum number of processes to be used.<br>
	        (Default: All <code>MPI_COMM_WORLD</code>processes)
        <dt><code>-T</code> <em>size</em>, <code>--threshold=</code><em>size</em>
            <dd>Sets the threshold for alignment of objects in the HDF5 file.
	        (Default:  <code>1</code>)
        <dt><code>-w</code>, <code>--write-only</code>
            <dd>Performs only write tests, not read tests.
	        (Default: Read and write tests)
        <dt><code>-x</code> <em>size</em>, <code>--min-xfer-size=</code><em>size</em>
            <dd>Sets the minimum transfer buffer size.
	        (Default: <code>128K</code>)
        <dt><code>-X</code> <em>size</em>, <code>--max-xfer-size=</code>size<em></em>
            <dd>Sets the maximum transfer buffer size.
	        (Default: <code>1M</code>)
    </dl>
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<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
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<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-Redeploy">h5redeploy</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5redeploy </code>
        [<code>help </code> | <code>-help</code>] 
    <dd><code>h5redeploy </code>
        [<code>-echo</code>] 
        [<code>-force</code>] 
        [<code>-prefix=</code><em>dir</em>]
        [<code>-tool=</code><em>tool</em>]
        [<code>-show</code>]
<dt><strong>Purpose:</strong>
    <dd>Updates HDF5 compiler tools after an HDF5 software installation
        in a new location.
<dt><strong>Description:</strong>
    <dd><code>h5redeploy</code> updates the HDF5 compiler tools after 
        the HDF5 software has been installed in a new location.

<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><code>help</code>, <code>-help</code>
            <dd>Prints a help message.
        <dt><code>-echo</code>
            <dd>Shows all the shell commands executed.
        <dt><code>-force</code>
            <dd>Performs the requested action without offerring any prompt 
	        requesting confirmation.
        <dt><code>-prefix=</code><em>dir</em>
            <dd>Specifies a new directory in which to find the 
	        HDF5 subdirectories <code>lib/</code> and 
		<code>include/</code>.<br> 
		(Default: current working directory)
        <dt><code>-tool=</code><em>tool</em>
            <dd>Specifies  the tool to update. 
	        <em>tool</em> must be in the current directory
                 and must be writable.<br>
		(Default: <code>h5cc</code>)
        <dt><code>-show</code>
            <dd>Shows all of the shell commands to be executed 
	        without actually executing them.
    </dl>
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<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
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<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-H5CC">h5cc</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5cc
        [</code><em>OPTIONS</em><code>]</code> <em>&lt;compile line&gt;</em>
<dt><strong>Purpose:</strong>
    <dd>Helper script to compile HDF5 applications.
<dt><strong>Description:</strong>
    <dd><code>h5cc</code> can be used in much the same way MPIch is used
        to compile an HDF5 program. It takes care of specifying where the
        HDF5 header files and libraries are on the command line.
        <p>
        <code>h5cc</code> supercedes all other compiler scripts in that
        if you've used them to compile the HDF5 library, then
        <code>h5cc</code> also uses those scripts. For example, when
        compiling an MPIch program, you use the <code>mpicc</code>
        script. If you've built HDF5 using MPIch, then <code>h5cc</code>
        uses the MPIch program for compilation.
        <p>
        Some programs use HDF5 in only a few modules. It isn't necessary
        to use <code>h5cc</code> to compile those modules which don't use
        HDF5. In fact, since <code>h5cc</code> is only a convenience
        script, you are still able to compile HDF5 modules in the normal
        way. In that case, you will have to specify the HDF5 libraries
        and include paths yourself.
        <p>
        An example of how to use <code>h5cc</code> to compile the program
        <code>hdf_prog</code>, which consists of modules
        <code>prog1.c</code> and <code>prog2.c</code> and uses the HDF5
        shared library, would be as follows:
        <pre>
        # h5cc -c prog1.c
        # h5cc -c prog2.c
        # h5cc -shlib -o hdf_prog prog1.o prog2.o
        </pre>
<dt><strong>Options and Parameters:</strong>
    <dd>
    <dl>
        <dt><code>-help</code>
            <dd>Prints a help message.
        <dt><code>-echo</code>
            <dd>Show all the shell commands executed.
        <dt><code>-prefix=DIR</code>
            <dd>Use the directory <code><em>DIR</em></code> to find the HDF5 
                <code>lib/</code> and <code>include/</code> subdirectories. 
                <br>
                Default: prefix specified when configuring HDF5.
        <dt><code>-show</code>
            <dd>Show the commands without executing them.
        <dt><code>-shlib</code>
            <dd>Compile using shared HDF5 libraries.
        <dt><code>-noshlib</code>
            <dd>Compile using static HDF5 libraries [default].
        <dt><em>&lt;compile line&gt;</em>
            <dd>The normal compile line options for your compiler. 
                <code>h5cc</code> uses the same compiler you used to compile HDF5. 
                Check your compiler's manual for more information on which
                options are needed.
    </dl>
<dt><strong>Environment Variables:</strong>
    <dd>When set, these environment variables override some of the built-in
        defaults of <code>h5cc</code>.

    <dl>
        <dt><code>HDF5_CC</code>
            <dd>Use a different C compiler.
        <dt><code>HDF5_CLINKER</code>
            <dd>Use a different linker.
        <dt><code>HDF5_USE_SHLIB=[yes|no]</code>
            <dd>Use shared version of the HDF5 library [default: no].
    </dl>
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<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
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</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-H5FC">h5fc</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5fc
        [</code><em>OPTIONS</em><code>]</code> <em>&lt;compile line&gt;</em>
<dt><strong>Purpose:</strong>
    <dd>Helper script to compile HDF5 Fortran90 applications.
<dt><strong>Description:</strong>
    <dd><p>
        <code>h5fc</code> can be used in much the same way MPIch is used
        to compile an HDF5 program. It takes care of specifying where the
        HDF5 header files and libraries are on the command line.
        <p>
        <code>h5fc</code> supercedes all other compiler scripts in that
        if you've used them to compile the HDF5 Fortran library, then
        <code>h5fc</code> also uses those scripts. For example, when
        compiling an MPIch program, you use the <code>mpif90</code>
        script. If you've built HDF5 using MPIch, then <code>h5fc</code>
        uses the MPIch program for compilation.
        <p>
        Some programs use HDF5 in only a few modules. It isn't necessary
        to use <code>h5fc</code> to compile those modules which don't use
        HDF5. In fact, since <code>h5fc</code> is only a convenience
        script, you are still able to compile HDF5 Fortran modules in the 
        normal way. In that case, you will have to specify the HDF5 libraries
        and include paths yourself.
        <p>
        An example of how to use <code>h5fc</code> to compile the program
        <code>hdf_prog</code>, which consists of modules
        <code>prog1.f90</code> and <code>prog2.f90</code> 
        and uses the HDF5 Fortran library, would be as follows:
        <pre>
        # h5fc -c prog1.f90
        # h5fc -c prog2.f90
        # h5fc -o hdf_prog prog1.o prog2.o
        </pre>
<dt><strong>Options and Parameters:</strong>
    <dd>
    <dl>
        <dt><code>-help</code>
            <dd>Prints a help message.
        <dt><code>-echo</code>
            <dd>Show all the shell commands executed.
        <dt><code>-prefix=DIR</code>
            <dd>Use the directory <code>DIR</code> to find HDF5 
                <code>lib/</code> and <code>include/</code> subdirectories 
                <br>
                Default: prefix specified when configuring HDF5.
        <dt><code>-show</code>
            <dd>Show the commands without executing them.
        <dt><em>&lt;compile line&gt;</em>
            <dd>The normal compile line options for your compiler. 
                <code>h5fc</code> uses the same compiler you used 
                to compile HDF5. Check your compiler's manual for 
                more information on which options are needed.
    </dl>
<dt><strong>Environment Variables:</strong>
    <dd>When set, these environment variables override some of the built-in
        defaults of <code>h5cc</code>.
        <dl>
          <dt><code>HDF5_FC</code>
            <dd>Use a different Fortran90 compiler.
          <dt><code>HDF5_FLINKER</code>
            <dd>Use a different linker.
        </dl>
<!--
<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
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</dl>


<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-H5C++">h5c++</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5c++
        [</code><em>OPTIONS</em><code>]</code> <em>&lt;compile line&gt;</em>
<dt><strong>Purpose:</strong>
    <dd>Helper script to compile HDF5 C++ applications.
<dt><strong>Description:</strong>
    <dd><p>
        <code>h5c++</code> can be used in much the same way MPIch is used
        to compile an HDF5 program. It takes care of specifying where the
        HDF5 header files and libraries are on the command line.
        <p>
        <code>h5c++</code> supercedes all other compiler scripts in that
        if you've used one set of compiler scripts to compile the 
	HDF5 C++ library, then <code>h5c++</code> uses those same scripts. 
	For example, when compiling an MPIch program, 
        you use the <code>mpiCC</code> script. 
        <p>
        Some programs use HDF5 in only a few modules. It isn't necessary
        to use <code>h5c++</code> to compile those modules which don't use
        HDF5. In fact, since <code>h5c++</code> is only a convenience
        script, you are still able to compile HDF5 C++ modules in the 
        normal way. In that case, you will have to specify the HDF5 libraries
        and include paths yourself.
        <p>
        An example of how to use <code>h5c++</code> to compile the program
        <code>hdf_prog</code>, which consists of modules
        <code>prog1.cpp</code> and <code>prog2.cpp</code> 
        and uses the HDF5 C++ library, would be as follows:
        <pre>
        # h5c++ -c prog1.cpp
        # h5c++ -c prog2.cpp
        # h5c++ -o hdf_prog prog1.o prog2.o</pre>
<dt><strong>Options and Parameters:</strong>
    <dd>
    <dl>
        <dt><code>-help</code>
            <dd>Prints a help message.
        <dt><code>-echo</code>
            <dd>Show all the shell commands executed.
        <dt><code>-prefix=DIR</code>
            <dd>Use the directory <code>DIR</code> to find HDF5 
                <code>lib/</code> and <code>include/</code> subdirectories 
                <br>
                Default: prefix specified when configuring HDF5.
        <dt><code>-show</code>
            <dd>Show the commands without executing them.
        <dt><em>&lt;compile line&gt;</em>
            <dd>The normal compile line options for your compiler. 
                <code>h5c++</code> uses the same compiler you used 
                to compile HDF5. Check your compiler's manual for 
                more information on which options are needed.
    </dl>
<dt><strong>Environment Variables:</strong>
    <dd>When set, these environment variables override some of the built-in
        defaults of <code>h5c++</code>.
        <dl>
          <dt><code>HDF5_CXX</code>
            <dd>Use a different C++ compiler.
          <dt><code>HDF5_CXXLINKER</code>
            <dd>Use a different linker.
        </dl>
<!--
<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
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</dl>


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<hr>
<dl>
<dt><strong>Tool Name:</strong> <a name="Tools-H5toh4">h5toh4</a>
<dt><strong>Syntax:</strong>
    <dd><code>h5toh4 -h</code><br>
        <code>h5toh4 </code><em>
            h5file
            h4file</em><br>
        <code>h5toh4 </code><em>
            h5file</em><br>
        <code>h5toh4 -m </code><em>
            h5file1
            h5file2
            h5file3</em> ...
<dt><strong>Purpose:</strong>
    <dd>Purpose...
<dt><strong>Description:</strong>
    <dd><code>TOOL</code> is an HDF5 utility which ...
        Paragraph
        <pre>              sample code
              sample code
              sample code </pre>
        <p>
        Paragraph
        <p>
        Paragraph
<dt><strong>Options and Parameters:</strong>
    <dl>
        <dt><code>-option</code>
            <dd>Description
        <dt><em>parameter</em>
            <dd>Description
    </dl>
<dt><strong>Current Status:</strong>
    <dd>
<dt><strong>See Also:</strong>
    <dd>
</dl>


-->


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And in this document, the 
<a href="RM_H5Front.html">HDF5 Reference Manual</a>&nbsp;&nbsp;
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<a href="mailto:hdfhelp@ncsa.uiuc.edu">HDF Help Desk</a> 
<br>
Describes HDF5 Release 1.5, Unreleased Development Branch
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Last modified: 11 June 2003

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