1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* This example shows how to create a compound data type,
* write an array which has the compound data type to the file,
* and read back fields' subsets.
*/
#include "hdf5.h"
#define H5FILE_NAME "SDScompound.h5"
#define DATASETNAME "ArrayOfStructures"
#define LENGTH 10
#define RANK 1
int
main(void)
{
/* First structure and dataset*/
typedef struct s1_t {
int a;
float b;
double c;
} s1_t;
s1_t s1[LENGTH];
hid_t s1_tid; /* File datatype identifier */
/* Second structure (subset of s1_t) and dataset*/
typedef struct s2_t {
double c;
int a;
} s2_t;
s2_t s2[LENGTH];
hid_t s2_tid; /* Memory datatype handle */
/* Third "structure" ( will be used to read float field of s1) */
hid_t s3_tid; /* Memory datatype handle */
float s3[LENGTH];
int i;
hid_t file, dataset, space; /* Handles */
herr_t status;
hsize_t dim[] = {LENGTH}; /* Dataspace dimensions */
/*
* Initialize the data
*/
for (i = 0; i < LENGTH; i++) {
s1[i].a = i;
s1[i].b = i * i;
s1[i].c = 1. / (i + 1);
}
/*
* Create the data space.
*/
space = H5Screate_simple(RANK, dim, NULL);
/*
* Create the file.
*/
file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*
* Create the memory data type.
*/
s1_tid = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
H5Tinsert(s1_tid, "a_name", HOFFSET(s1_t, a), H5T_NATIVE_INT);
H5Tinsert(s1_tid, "c_name", HOFFSET(s1_t, c), H5T_NATIVE_DOUBLE);
H5Tinsert(s1_tid, "b_name", HOFFSET(s1_t, b), H5T_NATIVE_FLOAT);
/*
* Create the dataset.
*/
dataset = H5Dcreate2(file, DATASETNAME, s1_tid, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*
* Wtite data to the dataset;
*/
status = H5Dwrite(dataset, s1_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s1);
/*
* Release resources
*/
H5Tclose(s1_tid);
H5Sclose(space);
H5Dclose(dataset);
H5Fclose(file);
/*
* Open the file and the dataset.
*/
file = H5Fopen(H5FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT);
dataset = H5Dopen2(file, DATASETNAME, H5P_DEFAULT);
/*
* Create a data type for s2
*/
s2_tid = H5Tcreate(H5T_COMPOUND, sizeof(s2_t));
H5Tinsert(s2_tid, "c_name", HOFFSET(s2_t, c), H5T_NATIVE_DOUBLE);
H5Tinsert(s2_tid, "a_name", HOFFSET(s2_t, a), H5T_NATIVE_INT);
/*
* Read two fields c and a from s1 dataset. Fields in the file
* are found by their names "c_name" and "a_name".
*/
status = H5Dread(dataset, s2_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s2);
/*
* Display the fields
*/
printf("\n");
printf("Field c : \n");
for (i = 0; i < LENGTH; i++)
printf("%.4f ", s2[i].c);
printf("\n");
printf("\n");
printf("Field a : \n");
for (i = 0; i < LENGTH; i++)
printf("%d ", s2[i].a);
printf("\n");
/*
* Create a data type for s3.
*/
s3_tid = H5Tcreate(H5T_COMPOUND, sizeof(float));
status = H5Tinsert(s3_tid, "b_name", 0, H5T_NATIVE_FLOAT);
/*
* Read field b from s1 dataset. Field in the file is found by its name.
*/
status = H5Dread(dataset, s3_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s3);
/*
* Display the field
*/
printf("\n");
printf("Field b : \n");
for (i = 0; i < LENGTH; i++)
printf("%.4f ", s3[i]);
printf("\n");
/*
* Release resources
*/
H5Tclose(s2_tid);
H5Tclose(s3_tid);
H5Dclose(dataset);
H5Fclose(file);
return 0;
}
|