1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* This example shows how to work with extendible dataset.
* In the current version of the library dataset MUST be
* chunked.
*
*/
#include "hdf5.h"
#define H5FILE_NAME "SDSextendible.h5"
#define DATASETNAME "ExtendibleArray"
#define RANK 2
#define NX 10
#define NY 5
int
main(void)
{
hid_t file; /* handles */
hid_t dataspace, dataset;
hid_t filespace;
hid_t cparms;
hsize_t dims[2] = {3, 3}; /*
* dataset dimensions
* at the creation time
*/
hsize_t dims1[2] = {3, 3}; /* data1 dimensions */
hsize_t dims2[2] = {7, 1}; /* data2 dimensions */
hsize_t dims3[2] = {2, 2}; /* data3 dimensions */
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
hsize_t chunk_dims[2] = {2, 5};
hsize_t size[2];
hsize_t offset[2];
herr_t status;
int data1[3][3] = {{1, 1, 1}, /* data to write */
{1, 1, 1},
{1, 1, 1}};
int data2[7] = {2, 2, 2, 2, 2, 2, 2};
int data3[2][2] = {{3, 3}, {3, 3}};
int fillvalue = 0;
/*
* Create the data space with unlimited dimensions.
*/
dataspace = H5Screate_simple(RANK, dims, maxdims);
/*
* Create a new file. If file exists its contents will be overwritten.
*/
file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*
* Modify dataset creation properties, i.e. enable chunking.
*/
cparms = H5Pcreate(H5P_DATASET_CREATE);
status = H5Pset_chunk(cparms, RANK, chunk_dims);
status = H5Pset_fill_value(cparms, H5T_NATIVE_INT, &fillvalue);
/*
* Create a new dataset within the file using cparms
* creation properties.
*/
dataset = H5Dcreate2(file, DATASETNAME, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, cparms, H5P_DEFAULT);
/*
* Extend the dataset. This call assures that dataset is at least 3 x 3.
*/
size[0] = 3;
size[1] = 3;
status = H5Dset_extent(dataset, size);
/*
* Select a hyperslab.
*/
filespace = H5Dget_space(dataset);
offset[0] = 0;
offset[1] = 0;
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL, dims1, NULL);
/*
* Write the data to the hyperslab.
*/
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace, H5P_DEFAULT, data1);
/*
* Extend the dataset. Dataset becomes 10 x 3.
*/
dims[0] = dims1[0] + dims2[0];
size[0] = dims[0];
size[1] = dims[1];
status = H5Dset_extent(dataset, size);
/*
* Select a hyperslab.
*/
filespace = H5Dget_space(dataset);
offset[0] = 3;
offset[1] = 0;
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL, dims2, NULL);
/*
* Define memory space
*/
dataspace = H5Screate_simple(RANK, dims2, NULL);
/*
* Write the data to the hyperslab.
*/
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace, H5P_DEFAULT, data2);
/*
* Extend the dataset. Dataset becomes 10 x 5.
*/
dims[1] = dims1[1] + dims3[1];
size[0] = dims[0];
size[1] = dims[1];
status = H5Dset_extent(dataset, size);
/*
* Select a hyperslab
*/
filespace = H5Dget_space(dataset);
offset[0] = 0;
offset[1] = 3;
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL, dims3, NULL);
/*
* Define memory space.
*/
dataspace = H5Screate_simple(RANK, dims3, NULL);
/*
* Write the data to the hyperslab.
*/
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace, H5P_DEFAULT, data3);
/*
* Resulting dataset
*
* 1 1 1 3 3
* 1 1 1 3 3
* 1 1 1 0 0
* 2 0 0 0 0
* 2 0 0 0 0
* 2 0 0 0 0
* 2 0 0 0 0
* 2 0 0 0 0
* 2 0 0 0 0
* 2 0 0 0 0
*/
/*
* Close/release resources.
*/
H5Dclose(dataset);
H5Sclose(dataspace);
H5Sclose(filespace);
H5Pclose(cparms);
H5Fclose(file);
return 0;
}
|