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/************************************************************
This example illustrates the concept of virtual dataset.
The program creates three 1-dim source datasets and writes
data to them. Then it creates a 2-dim virtual dataset and
maps the first three rows of the virtual dataset to the data
in the source datasets. Elements of a row are mapped to all
elements of the corresponding source dataset.
The fourth row is not mapped and will be filled with the fill
values when virtual dataset is read back.
The program closes all datasets, and then reopens the virtual
dataset, and finds and prints its creation properties.
Then it reads the values.
This file is intended for use with HDF5 Library version 1.10
************************************************************/
#include "hdf5.h"
#include <stdio.h>
#include <stdlib.h>
#define FILE "vds.h5"
#define DATASET "VDS"
#define VDSDIM1 6
#define VDSDIM0 4
#define DIM0 6
#define RANK1 1
#define RANK2 2
const char *SRC_FILE[] = {
"a.h5",
"b.h5",
"c.h5"
};
const char *SRC_DATASET[] = {
"A",
"B",
"C"
};
int
main (void)
{
hid_t file, space, src_space, vspace, dset; /* Handles */
hid_t dcpl;
herr_t status;
hsize_t vdsdims[2] = {VDSDIM0, VDSDIM1}, /* Virtual satasets dimension */
dims[1] = {DIM0}, /* Source datasets dimensions */
start[2], /* Hyperslab parameters */
stride[2],
count[2],
block[2];
hsize_t start_out[2],
stride_out[2],
count_out[2],
block_out[2];
int wdata[DIM0], /* Write buffer for source dataset */
rdata[VDSDIM0][VDSDIM1], /* Read buffer for virtual dataset */
i, j, k, l;
int fill_value = -1; /* Fill value for VDS */
H5D_layout_t layout; /* Storage layout */
size_t num_map; /* Number of mappings */
ssize_t len; /* Length of the string; also a return value */
char *filename;
char *dsetname;
hsize_t nblocks;
hsize_t *buf; /* Buffer to hold hyperslab coordinates */
/*
* Create source files and datasets. This step is optional.
*/
for (i=0; i < 3; i++) {
/*
* Initialize data for i-th source dataset.
*/
for (j = 0; j < DIM0; j++) wdata[j] = i+1;
/*
* Create the source files and datasets. Write data to each dataset and
* close all resources.
*/
file = H5Fcreate (SRC_FILE[i], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
space = H5Screate_simple (RANK1, dims, NULL);
dset = H5Dcreate (file, SRC_DATASET[i], H5T_NATIVE_INT, space, H5P_DEFAULT,
H5P_DEFAULT, H5P_DEFAULT);
status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
wdata);
status = H5Sclose (space);
status = H5Dclose (dset);
status = H5Fclose (file);
}
/* Create file in which virtual dataset will be stored. */
file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/* Create VDS dataspace. */
space = H5Screate_simple (RANK2, vdsdims, NULL);
/* Set VDS creation property. */
dcpl = H5Pcreate (H5P_DATASET_CREATE);
status = H5Pset_fill_value (dcpl, H5T_NATIVE_INT, &fill_value);
/* Initialize hyperslab values. */
start[0] = 0;
start[1] = 0;
count[0] = 1;
count[1] = 1;
block[0] = 1;
block[1] = VDSDIM1;
/*
* Build the mappings.
* Selections in the source datasets are H5S_ALL.
* In the virtual dataset we select the first, the second and the third rows
* and map each row to the data in the corresponding source dataset.
*/
src_space = H5Screate_simple (RANK1, dims, NULL);
for (i = 0; i < 3; i++) {
start[0] = (hsize_t)i;
/* Select i-th row in the virtual dataset; selection in the source datasets is the same. */
status = H5Sselect_hyperslab (space, H5S_SELECT_SET, start, NULL, count, block);
status = H5Pset_virtual (dcpl, space, SRC_FILE[i], SRC_DATASET[i], src_space);
}
/* Create a virtual dataset. */
dset = H5Dcreate (file, DATASET, H5T_NATIVE_INT, space, H5P_DEFAULT,
dcpl, H5P_DEFAULT);
status = H5Sclose (space);
status = H5Sclose (src_space);
status = H5Dclose (dset);
status = H5Fclose (file);
/*
* Now we begin the read section of this example.
*/
/*
* Open the file and virtual dataset.
*/
file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
dset = H5Dopen (file, DATASET, H5P_DEFAULT);
/*
* Get creation property list and mapping properties.
*/
dcpl = H5Dget_create_plist (dset);
/*
* Get storage layout.
*/
layout = H5Pget_layout (dcpl);
if (H5D_VIRTUAL == layout)
printf(" Dataset has a virtual layout \n");
else
printf("Wrong layout found \n");
/*
* Find the number of mappings.
*/
status = H5Pget_virtual_count (dcpl, &num_map);
printf("Number of mappings is %d\n", num_map);
/*
* Get mapping parameters for each mapping.
*/
for (i = 0; i < (int)num_map; i++) {
printf("Mapping %d \n", i);
printf(" Selection in the virtual dataset ");
/* Get selection in the virttual dataset */
vspace = H5Pget_virtual_vspace (dcpl, (size_t)i);
/* Make sure that this is a hyperslab selection and then print information. */
if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
nblocks = H5Sget_select_hyper_nblocks (vspace);
buf = (hsize_t *)malloc(sizeof(hsize_t)*2*RANK2*nblocks);
status = H5Sget_select_hyper_blocklist (vspace, (hsize_t)0, nblocks, buf);
for (l=0; l<nblocks; l++) {
printf("(");
for (k=0; k<RANK2-1; k++)
printf("%d,", (int)buf[k]);
printf("%d ) - (", (int)buf[k]);
for (k=0; k<RANK2-1; k++)
printf("%d,", (int)buf[RANK2+k]);
printf("%d)\n", (int)buf[RANK2+k]);
}
/* We also can use new APIs to get start, stride, count and block */
if (H5Sis_regular_hyperslab(vspace)) {
status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out);
printf("start = [%d, %d] \n", (int)start_out[0], (int)start_out[1]);
printf("stride = [%d, %d] \n", (int)stride_out[0], (int)stride_out[1]);
printf("count = [%d, %d] \n", (int)count_out[0], (int)count_out[1]);
printf("block = [%d, %d] \n", (int)block_out[0], (int)block_out[1]);
}
}
/* Get source file name. */
len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0);
filename = (char *)malloc((size_t)len*sizeof(char)+1);
H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1);
printf(" Source filename %s\n", filename);
/* Get source dataset name. */
len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0);
dsetname = (char *)malloc((size_t)len*sizeof(char)+1);
H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1);
printf(" Source dataset name %s\n", dsetname);
/* Get selection in the source dataset. */
printf(" Selection in the source dataset ");
src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i);
/* Make sure it is ALL selection and then print the coordinates. */
if(H5Sget_select_type(src_space) == H5S_SEL_ALL) {
printf("(0) - (%d) \n", DIM0-1);
}
H5Sclose(vspace);
H5Sclose(src_space);
free(filename);
free(dsetname);
free(buf);
}
#ifdef LATER
/*
* Read the data using the default properties.
*/
status = H5Dread (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
rdata[0]);
/*
* Output the data to the screen.
*/
printf (" VDS Data:\n");
for (i=0; i<VDSDIM0; i++) {
printf (" [");
for (j=0; j<VDSDIM1; j++)
printf (" %3d", rdata[i][j]);
printf ("]\n");
}
#endif
/*
* Close and release resources.
*/
status = H5Pclose (dcpl);
status = H5Dclose (dset);
status = H5Fclose (file);
return 0;
}
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