summaryrefslogtreecommitdiffstats
path: root/fortran/examples/ph5example.f90
blob: ae2906d681955a3b16a2b05d264c558dbaf238c7 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * 
!   Copyright by the Board of Trustees of the University of Illinois.         *
!   All rights reserved.                                                      *
!                                                                             *
!   This file is part of HDF5.  The full HDF5 copyright notice, including     *
!   terms governing use, modification, and redistribution, is contained in    *
!   the files COPYING and Copyright.html.  COPYING can be found at the root   *
!   of the source code distribution tree; Copyright.html can be found at the  *
!   root level of an installed copy of the electronic HDF5 document set and   *
!   is linked from the top-level documents page.  It can also be found at     *
!   http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have     *
!   access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * 
!
! Fortran parallel example.  Copied from Tutorial's example program of
! dataset.f90.

     PROGRAM DATASET

     USE HDF5 ! This module contains all necessary modules 
        
     IMPLICIT NONE

     INCLUDE 'mpif.h'
     ! Hard coded the file name.  Change it according to where your PFS is.
     CHARACTER(LEN=20), PARAMETER :: filename = "/tmp/sds.h5"  ! File name
     CHARACTER(LEN=8), PARAMETER :: dsetname = "IntArray" ! Dataset name

     INTEGER(HID_T) :: file_id       ! File identifier 
     INTEGER(HID_T) :: dset_id       ! Dataset identifier 
     INTEGER(HID_T) :: filespace     ! Dataspace identifier in file 
     INTEGER(HID_T) :: plist_id      ! Property list identifier 

     INTEGER(HSIZE_T), DIMENSION(2) :: dimsf = (/5,8/) ! Dataset dimensions.
!     INTEGER, DIMENSION(7) :: dimsfi = (/5,8,0,0,0,0,0/) 
!     INTEGER(HSIZE_T), DIMENSION(2) :: dimsfi = (/5,8/)
     INTEGER(HSIZE_T), DIMENSION(2) :: dimsfi

     INTEGER, ALLOCATABLE :: data(:,:)   ! Data to write
     INTEGER :: rank = 2 ! Dataset rank 

     INTEGER :: error, error_n  ! Error flags
     INTEGER :: i, j
     !
     ! MPI definitions and calls.
     !
     INTEGER :: mpierror       ! MPI error flag
     INTEGER :: comm, info
     INTEGER :: mpi_size, mpi_rank
     comm = MPI_COMM_WORLD
     info = MPI_INFO_NULL
     CALL MPI_INIT(mpierror)
     CALL MPI_COMM_SIZE(comm, mpi_size, mpierror)
     CALL MPI_COMM_RANK(comm, mpi_rank, mpierror) 
     ! 
     ! Initialize data buffer with trivial data.
     !
     ALLOCATE ( data(dimsf(1),dimsf(2)))
     do i = 1, dimsf(2)
     do j = 1, dimsf(1)
        data(j,i) = j - 1 + (i-1)*dimsf(1) 
     enddo
     enddo
     !
     ! Initialize FORTRAN interface
     !
     CALL h5open_f(error) 

     ! 
     ! Setup file access property list with parallel I/O access.
     !
     CALL h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, error)
     CALL h5pset_fapl_mpio_f(plist_id, comm, info, error)

     !
     ! Create the file collectively.
     ! 
     CALL h5fcreate_f(filename, H5F_ACC_TRUNC_F, file_id, error, access_prp = plist_id)
     CALL h5pclose_f(plist_id, error)
     !
     ! Create the data space for the  dataset. 
     !
     CALL h5screate_simple_f(rank, dimsf, filespace, error)

     !
     ! Create the dataset with default properties.
     !
     CALL h5dcreate_f(file_id, dsetname, H5T_NATIVE_INTEGER, filespace, &
                      dset_id, error)
     !
     ! Create property list for collective dataset write
     !
     CALL h5pcreate_f(H5P_DATASET_XFER_F, plist_id, error) 
     CALL h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, error)
     !
     ! For independent write use 
     ! CALL h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_INDEPENDENT_F, error)
     !
     
     !
     ! Write the dataset collectively. 
     !
     CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, data, dimsfi, error, &
                      xfer_prp = plist_id)
     !
     ! Deallocate data buffer.
     !
     DEALLOCATE(data)

     !
     ! Close resources.
     !
     CALL h5sclose_f(filespace, error)
     CALL h5dclose_f(dset_id, error)
     CALL h5pclose_f(plist_id, error)
     CALL h5fclose_f(file_id, error)
     ! Attempt to remove the data file.  Remove the line if the compiler
     ! does not support it.
     CALL unlink(filename)

     !
     ! Close FORTRAN interface
     !
     CALL h5close_f(error)

     CALL MPI_FINALIZE(mpierror)

     END PROGRAM DATASET