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|
!> @defgroup FH5 Fortran Library (H5) Interface
!!
!! @see H5, C-API
!!
!! @see @ref H5_UG, User Guide
!!
!> @ingroup FH5
!!
!! @brief This module provides fortran specific helper functions for the HDF library.
!
! COPYRIGHT
! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
! Copyright by The HDF Group. *
! Copyright by the Board of Trustees of the University of Illinois. *
! All rights reserved. *
! *
! This file is part of HDF5. The full HDF5 copyright notice, including *
! terms governing use, modification, and redistribution, is contained in *
! the COPYING file, which can be found at the root of the source code *
! distribution tree, or in https://www.hdfgroup.org/licenses. *
! If you do not have access to either file, you may request a copy from *
! help@hdfgroup.org. *
! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
!
! NOTES
! _____ __ __ _____ ____ _____ _______ _ _ _______
! |_ _| \/ | __ \ / __ \| __ \__ __|/\ | \ | |__ __|
! **** | | | \ / | |__) | | | | |__) | | | / \ | \| | | | ****
! **** | | | |\/| | ___/| | | | _ / | | / /\ \ | . ` | | | ****
! **** _| |_| | | | | | |__| | | \ \ | |/ ____ \| |\ | | | ****
! |_____|_| |_|_| \____/|_| \_\ |_/_/ \_\_| \_| |_|
!
! If you add a new function you must add the function name to the
! Windows dll file 'hdf5_fortrandll.def.in' in the fortran/src directory.
! This is needed for Windows based operating systems.
!
#include <H5config_f.inc>
MODULE H5LIB
USE, INTRINSIC :: ISO_C_BINDING, ONLY : C_PTR, C_INTPTR_T
USE H5GLOBAL
IMPLICIT NONE
PRIVATE
!
! H5F flags declaration
!
INTEGER, PARAMETER :: H5F_FLAGS_LEN = 25
INTEGER, DIMENSION(1:H5F_FLAGS_LEN) :: H5F_flags
!
! H5generic flags declaration
!
INTEGER, PARAMETER :: H5generic_FLAGS_LEN = 9
INTEGER, DIMENSION(1:H5generic_FLAGS_LEN) :: H5generic_flags
INTEGER, PARAMETER :: H5generic_haddr_FLAGS_LEN = 1
INTEGER(HADDR_T), DIMENSION(1:H5generic_haddr_FLAGS_LEN) :: H5generic_haddr_flags
!
! H5G flags declaration
!
INTEGER, PARAMETER :: H5G_FLAGS_LEN = 12
INTEGER, DIMENSION(1:H5G_FLAGS_LEN) :: H5G_flags
!
! H5D flags declaration
!
INTEGER, PARAMETER :: H5D_FLAGS_LEN = 29
INTEGER, DIMENSION(1:H5D_FLAGS_LEN) :: H5D_flags
INTEGER, PARAMETER :: H5D_SIZE_FLAGS_LEN = 2
INTEGER(SIZE_T), DIMENSION(1:H5D_SIZE_FLAGS_LEN) :: H5D_size_flags
!
! H5E flags declaration
!
INTEGER, PARAMETER :: H5E_FLAGS_LEN = 4
INTEGER, DIMENSION(1:H5E_FLAGS_LEN) :: H5E_flags
INTEGER, PARAMETER :: H5E_HID_FLAGS_LEN = 1
INTEGER(HID_T), DIMENSION(1:H5E_HID_FLAGS_LEN) :: H5E_hid_flags
!
! H5FD flags declaration
!
INTEGER, PARAMETER :: H5FD_FLAGS_LEN = 11
INTEGER, DIMENSION(1:H5FD_FLAGS_LEN) :: H5FD_flags
!
! H5FD file drivers flags declaration
!
INTEGER, PARAMETER :: H5FD_HID_FLAGS_LEN = 7
INTEGER(HID_T), DIMENSION(1:H5FD_HID_FLAGS_LEN) :: H5FD_hid_flags
!
! H5I flags declaration
!
INTEGER, PARAMETER :: H5I_FLAGS_LEN = 17
INTEGER, DIMENSION(1:H5I_FLAGS_LEN) :: H5I_flags
!
! H5L flags declaration
!
INTEGER, PARAMETER :: H5L_FLAGS_LEN = 6
INTEGER, DIMENSION(1:H5L_FLAGS_LEN) :: H5L_flags
!
! H5O flags declaration
!
INTEGER, PARAMETER :: H5O_FLAGS_LEN = 33
INTEGER, DIMENSION(1:H5O_FLAGS_LEN) :: H5O_flags
!
! H5P flags declaration
!
INTEGER, PARAMETER :: H5P_FLAGS_LEN = 18
INTEGER(HID_T), DIMENSION(1:H5P_FLAGS_LEN) :: H5P_flags
!
! H5P integers flags declaration
!
INTEGER, PARAMETER :: H5P_FLAGS_INT_LEN = 2
INTEGER, DIMENSION(1:H5P_FLAGS_INT_LEN) :: H5P_flags_int
!
! H5R flags declaration
!
INTEGER, PARAMETER :: H5R_FLAGS_LEN = 2
INTEGER, DIMENSION(1:H5R_FLAGS_LEN) :: H5R_flags
!
! H5S flags declaration
!
INTEGER, PARAMETER :: H5S_FLAGS_LEN = 18
INTEGER, DIMENSION(1:H5S_FLAGS_LEN) :: H5S_flags
INTEGER, PARAMETER :: H5S_HSIZE_FLAGS_LEN = 1
INTEGER(HSIZE_T), DIMENSION(1:H5S_HSIZE_FLAGS_LEN) :: H5S_hsize_flags
INTEGER, PARAMETER :: H5S_HID_FLAGS_LEN = 1
INTEGER(HSIZE_T), DIMENSION(1:H5S_HID_FLAGS_LEN) :: H5S_hid_flags
!
! H5T flags declaration
!
INTEGER, PARAMETER :: H5T_FLAGS_LEN = 35
INTEGER, DIMENSION(1:H5T_FLAGS_LEN) :: H5T_flags
!
! H5Z flags declaration
!
INTEGER, PARAMETER :: H5Z_FLAGS_LEN = 20
INTEGER, DIMENSION(1:H5Z_FLAGS_LEN) :: H5Z_flags
!
! H5 Library flags declaration
!
INTEGER, PARAMETER :: H5LIB_FLAGS_LEN = 2
INTEGER, DIMENSION(1:H5LIB_FLAGS_LEN) :: H5LIB_flags
PUBLIC :: h5open_f, h5close_f, h5get_libversion_f, h5dont_atexit_f, h5kind_to_type, h5offsetof, h5gmtime
PUBLIC :: h5garbage_collect_f, h5check_version_f
CONTAINS
!>
!! \ingroup FH5
!!
!! \brief Initializes HDF5 Fortran interface.
!!
!! \param error \fortran_error
!!
SUBROUTINE h5open_f(error)
USE H5F, ONLY : h5fget_obj_count_f, H5OPEN_NUM_OBJ
IMPLICIT NONE
INTEGER, INTENT(OUT) :: error
INTEGER(SIZE_T) :: H5OPEN_NUM_OBJ_LOC = 0
INTERFACE
INTEGER FUNCTION h5init_types_c(p_types, f_types, i_types) &
BIND(C,NAME='h5init_types_c')
IMPORT :: HID_T
IMPORT :: PREDEF_TYPES_LEN, FLOATING_TYPES_LEN, INTEGER_TYPES_LEN
IMPLICIT NONE
INTEGER(HID_T), DIMENSION(1:PREDEF_TYPES_LEN) :: p_types
INTEGER(HID_T), DIMENSION(1:FLOATING_TYPES_LEN) :: f_types
INTEGER(HID_T), DIMENSION(1:INTEGER_TYPES_LEN) :: i_types
END FUNCTION h5init_types_c
INTEGER FUNCTION h5init_flags_c(i_H5D_flags, &
i_H5D_size_flags,&
i_H5E_flags, &
i_H5E_hid_flags, &
i_H5F_flags, &
i_H5FD_flags, &
i_H5FD_hid_flags, &
i_H5G_flags, &
i_H5I_flags, &
i_H5L_flags, &
i_H5O_flags, &
i_H5P_flags, &
i_H5P_flags_int, &
i_H5R_flags, &
i_H5S_flags, &
i_H5S_hid_flags, &
i_H5S_hsize_flags, &
i_H5T_flags, &
i_H5Z_flags, &
i_H5generic_flags, &
i_H5generic_haddr_flags) &
BIND(C,NAME='h5init_flags_c')
IMPORT :: HID_T, SIZE_T, HSIZE_T, HADDR_T
IMPORT :: H5D_FLAGS_LEN, H5D_SIZE_FLAGS_LEN, &
H5E_FLAGS_LEN, H5E_HID_FLAGS_LEN, &
H5F_FLAGS_LEN, H5G_FLAGS_LEN, H5FD_FLAGS_LEN, &
H5FD_HID_FLAGS_LEN, H5I_FLAGS_LEN, H5L_FLAGS_LEN, &
H5O_FLAGS_LEN, H5P_FLAGS_LEN, H5P_FLAGS_INT_LEN, &
H5R_FLAGS_LEN, H5S_FLAGS_LEN, H5S_HID_FLAGS_LEN, H5S_HSIZE_FLAGS_LEN, &
H5T_FLAGS_LEN, H5Z_FLAGS_LEN, H5generic_FLAGS_LEN, H5generic_haddr_FLAGS_LEN
IMPLICIT NONE
INTEGER , DIMENSION(1:H5D_FLAGS_LEN) :: i_H5D_flags
INTEGER(SIZE_T) , DIMENSION(1:H5D_SIZE_FLAGS_LEN) :: i_H5D_size_flags
INTEGER , DIMENSION(1:H5E_FLAGS_LEN) :: i_H5E_flags
INTEGER(HID_T) , DIMENSION(1:H5E_HID_FLAGS_LEN) :: i_H5E_hid_flags
INTEGER , DIMENSION(1:H5F_FLAGS_LEN) :: i_H5F_flags
INTEGER , DIMENSION(1:H5G_FLAGS_LEN) :: i_H5G_flags
INTEGER , DIMENSION(1:H5FD_FLAGS_LEN) :: i_H5FD_flags
INTEGER(HID_T) , DIMENSION(1:H5FD_HID_FLAGS_LEN) :: i_H5FD_hid_flags
INTEGER , DIMENSION(1:H5I_FLAGS_LEN) :: i_H5I_flags
INTEGER , DIMENSION(1:H5L_FLAGS_LEN) :: i_H5L_flags
INTEGER , DIMENSION(1:H5O_FLAGS_LEN) :: i_H5O_flags
INTEGER(HID_T) , DIMENSION(1:H5P_FLAGS_LEN) :: i_H5P_flags
INTEGER , DIMENSION(1:H5P_FLAGS_INT_LEN) :: i_H5P_flags_int
INTEGER , DIMENSION(1:H5R_FLAGS_LEN) :: i_H5R_flags
INTEGER , DIMENSION(1:H5S_FLAGS_LEN) :: i_H5S_flags
INTEGER(HID_T) , DIMENSION(1:H5S_HID_FLAGS_LEN) :: i_H5S_hid_flags
INTEGER(HSIZE_T), DIMENSION(1:H5S_HSIZE_FLAGS_LEN) :: i_H5S_hsize_flags
INTEGER , DIMENSION(1:H5T_FLAGS_LEN) :: i_H5T_flags
INTEGER , DIMENSION(1:H5Z_FLAGS_LEN) :: i_H5Z_flags
INTEGER , DIMENSION(1:H5generic_FLAGS_LEN) :: i_H5generic_flags
INTEGER(HADDR_T), DIMENSION(1:H5generic_haddr_FLAGS_LEN) :: i_H5generic_haddr_flags
END FUNCTION h5init_flags_c
INTEGER FUNCTION h5init1_flags_c( i_H5LIB_flags ) &
BIND(C,NAME='h5init1_flags_c')
IMPORT :: H5LIB_FLAGS_LEN
IMPLICIT NONE
INTEGER, DIMENSION(1:H5LIB_FLAGS_LEN) :: i_H5LIB_flags
END FUNCTION h5init1_flags_c
END INTERFACE
! Check if H5open_f has already been called. If so, skip doing it again.
IF(H5OPEN_NUM_OBJ .NE. 0) RETURN
error = h5init_types_c(predef_types, floating_types, integer_types)
H5T_NATIVE_INTEGER_KIND(1:5) = predef_types(1:5)
H5T_NATIVE_INTEGER = predef_types(6)
H5T_NATIVE_REAL = predef_types(7)
H5T_NATIVE_DOUBLE = predef_types(8)
H5T_NATIVE_CHARACTER = predef_types(9)
H5T_STD_REF_OBJ = predef_types(10)
H5T_STD_REF_DSETREG = predef_types(11)
H5T_NATIVE_REAL_C_FLOAT = predef_types(12)
H5T_NATIVE_REAL_C_DOUBLE = predef_types(13)
H5T_NATIVE_REAL_C_LONG_DOUBLE = predef_types(14)
H5T_NATIVE_B8 = predef_types(15)
H5T_NATIVE_B16 = predef_types(16)
H5T_NATIVE_B32 = predef_types(17)
H5T_NATIVE_B64 = predef_types(18)
H5T_NATIVE_FLOAT_128 = predef_types(19)
H5T_IEEE_F32BE = floating_types(1)
H5T_IEEE_F32LE = floating_types(2)
H5T_IEEE_F64BE = floating_types(3)
H5T_IEEE_F64LE = floating_types(4)
H5T_STD_I8BE = integer_types(1)
H5T_STD_I8LE = integer_types(2)
H5T_STD_I16BE = integer_types(3)
H5T_STD_I16LE = integer_types(4)
H5T_STD_I32BE = integer_types(5)
H5T_STD_I32LE = integer_types(6)
H5T_STD_I64BE = integer_types(7)
H5T_STD_I64LE = integer_types(8)
H5T_STD_U8BE = integer_types(9)
H5T_STD_U8LE = integer_types(10)
H5T_STD_U16BE = integer_types(11)
H5T_STD_U16LE = integer_types(12)
H5T_STD_U32BE = integer_types(13)
H5T_STD_U32LE = integer_types(14)
H5T_STD_U64BE = integer_types(15)
H5T_STD_U64LE = integer_types(16)
H5T_STRING = integer_types(17)
H5T_STD_B8BE = integer_types(18)
H5T_STD_B8LE = integer_types(19)
H5T_STD_B16BE = integer_types(20)
H5T_STD_B16LE = integer_types(21)
H5T_STD_B32BE = integer_types(22)
H5T_STD_B32LE = integer_types(23)
H5T_STD_B64BE = integer_types(24)
H5T_STD_B64LE = integer_types(25)
H5T_FORTRAN_S1 = integer_types(26)
H5T_C_S1 = integer_types(27)
error = error + h5init_flags_c(H5D_flags, &
H5D_size_flags, &
H5E_flags, &
H5E_hid_flags, &
H5F_flags, &
H5FD_flags, &
H5FD_hid_flags, &
H5G_flags, &
H5I_flags, &
H5L_flags, &
H5O_flags, &
H5P_flags, &
H5P_flags_int, &
H5R_flags, &
H5S_flags, &
H5S_hid_flags, &
H5S_hsize_flags, &
H5T_flags, &
H5Z_flags, &
H5generic_flags,&
H5generic_haddr_flags)
!
! H5F flags
!
H5F_ACC_RDWR_F = H5F_flags(1)
H5F_ACC_RDONLY_F = H5F_flags(2)
H5F_ACC_TRUNC_F = H5F_flags(3)
H5F_ACC_EXCL_F = H5F_flags(4)
H5F_ACC_DEBUG_F = H5F_flags(5)
H5F_SCOPE_LOCAL_F = H5F_flags(6)
H5F_SCOPE_GLOBAL_F = H5F_flags(7)
H5F_CLOSE_DEFAULT_F = H5F_flags(8)
H5F_CLOSE_WEAK_F = H5F_flags(9)
H5F_CLOSE_SEMI_F = H5F_flags(10)
H5F_CLOSE_STRONG_F = H5F_flags(11)
H5F_OBJ_FILE_F = H5F_flags(12)
H5F_OBJ_DATASET_F = H5F_flags(13)
H5F_OBJ_GROUP_F = H5F_flags(14)
H5F_OBJ_DATATYPE_F = H5F_flags(15)
H5F_OBJ_ALL_F = H5F_flags(16)
H5F_LIBVER_EARLIEST_F = H5F_flags(17)
H5F_LIBVER_LATEST_F = H5F_flags(18)
H5F_LIBVER_ERROR_F = H5F_flags(19)
H5F_LIBVER_NBOUNDS_F = H5F_flags(20)
H5F_UNLIMITED_F = H5F_flags(21)
H5F_LIBVER_V18_F = H5F_flags(22)
H5F_LIBVER_V110_F = H5F_flags(23)
H5F_LIBVER_V112_F = H5F_flags(24)
H5F_LIBVER_V114_F = H5F_flags(25)
!
! H5generic flags
!
H5_INDEX_UNKNOWN_F = H5generic_flags(1)
H5_INDEX_NAME_F = H5generic_flags(2)
H5_INDEX_CRT_ORDER_F = H5generic_flags(3)
H5_INDEX_N_F = H5generic_flags(4)
H5_ITER_UNKNOWN_F = H5generic_flags(5)
H5_ITER_INC_F = H5generic_flags(6)
H5_ITER_DEC_F = H5generic_flags(7)
H5_ITER_NATIVE_F = H5generic_flags(8)
H5_ITER_N_F = H5generic_flags(9)
HADDR_UNDEF_F = H5generic_haddr_flags(1)
!
! H5G flags
!
H5G_UNKNOWN_F = H5G_flags(1)
H5G_GROUP_F = H5G_flags(2)
H5G_DATASET_F = H5G_flags(3)
H5G_TYPE_F = H5G_flags(4)
H5G_SAME_LOC_F = H5G_flags(5)
H5G_LINK_ERROR_F = H5G_flags(6)
H5G_LINK_HARD_F = H5G_flags(7)
H5G_LINK_SOFT_F = H5G_flags(8)
H5G_STORAGE_TYPE_UNKNOWN_F = H5G_flags(9)
H5G_STORAGE_TYPE_SYMBOL_TABLE_F = H5G_flags(10)
H5G_STORAGE_TYPE_COMPACT_F = H5G_flags(11)
H5G_STORAGE_TYPE_DENSE_F = H5G_flags(12)
!
! H5D flags
!
H5D_COMPACT_F = H5D_flags(1)
H5D_CONTIGUOUS_F = H5D_flags(2)
H5D_CHUNKED_F = H5D_flags(3)
H5D_ALLOC_TIME_ERROR_F = H5D_flags(4)
H5D_ALLOC_TIME_DEFAULT_F = H5D_flags(5)
H5D_ALLOC_TIME_EARLY_F = H5D_flags(6)
H5D_ALLOC_TIME_LATE_F = H5D_flags(7)
H5D_ALLOC_TIME_INCR_F = H5D_flags(8)
H5D_SPACE_STS_ERROR_F = H5D_flags(9)
H5D_SPACE_STS_NOT_ALLOCATED_F = H5D_flags(10)
H5D_SPACE_STS_PART_ALLOCATED_F = H5D_flags(11)
H5D_SPACE_STS_ALLOCATED_F = H5D_flags(12)
H5D_FILL_TIME_ERROR_F = H5D_flags(13)
H5D_FILL_TIME_ALLOC_F = H5D_flags(14)
H5D_FILL_TIME_NEVER_F = H5D_flags(15)
H5D_FILL_VALUE_ERROR_F = H5D_flags(16)
H5D_FILL_VALUE_UNDEFINED_F = H5D_flags(17)
H5D_FILL_VALUE_DEFAULT_F = H5D_flags(18)
H5D_FILL_VALUE_USER_DEFINED_F = H5D_flags(19)
H5D_CHUNK_CACHE_W0_DFLT_F = H5D_flags(20)
H5D_MPIO_NO_COLLECTIVE_F = H5D_flags(21)
H5D_MPIO_CHUNK_INDEPENDENT_F = H5D_flags(22)
H5D_MPIO_CHUNK_COLLECTIVE_F = H5D_flags(23)
H5D_MPIO_CHUNK_MIXED_F = H5D_flags(24)
H5D_MPIO_CONTIG_COLLECTIVE_F = H5D_flags(25)
H5D_VDS_ERROR_F = H5D_flags(26)
H5D_VDS_FIRST_MISSING_F = H5D_flags(27)
H5D_VDS_LAST_AVAILABLE_F = H5D_flags(28)
H5D_VIRTUAL_F = H5D_flags(29)
H5D_CHUNK_CACHE_NSLOTS_DFLT_F = H5D_size_flags(1)
H5D_CHUNK_CACHE_NBYTES_DFLT_F = H5D_size_flags(2)
!
! H5E flags
!
H5E_DEFAULT_F = H5E_hid_flags(1)
H5E_MAJOR_F = H5E_flags(1)
H5E_MINOR_F = H5E_flags(2)
H5E_WALK_UPWARD_F = H5E_flags(3)
H5E_WALK_DOWNWARD_F = H5E_flags(4)
!
! H5FD flags
!
H5FD_MPIO_INDEPENDENT_F = H5FD_flags(1)
H5FD_MPIO_COLLECTIVE_F = H5FD_flags(2)
H5FD_MEM_NOLIST_F = H5FD_flags(3)
H5FD_MEM_DEFAULT_F = H5FD_flags(4)
H5FD_MEM_SUPER_F = H5FD_flags(5)
H5FD_MEM_BTREE_F = H5FD_flags(6)
H5FD_MEM_DRAW_F = H5FD_flags(7)
H5FD_MEM_GHEAP_F = H5FD_flags(8)
H5FD_MEM_LHEAP_F = H5FD_flags(9)
H5FD_MEM_OHDR_F = H5FD_flags(10)
H5FD_MEM_NTYPES_F = H5FD_flags(11)
!
! H5FD file driver flags
!
H5FD_CORE_F = H5FD_hid_flags(1)
H5FD_FAMILY_F = H5FD_hid_flags(2)
H5FD_LOG_F = H5FD_hid_flags(3)
H5FD_MPIO_F = H5FD_hid_flags(4)
H5FD_MULTI_F = H5FD_hid_flags(5)
H5FD_SEC2_F = H5FD_hid_flags(6)
H5FD_STDIO_F = H5FD_hid_flags(7)
!
! H5I flags declaration
!
H5I_FILE_F = H5I_flags(1)
H5I_GROUP_F = H5I_flags(2)
H5I_DATATYPE_F = H5I_flags(3)
H5I_DATASPACE_F = H5I_flags(4)
H5I_DATASET_F = H5I_flags(5)
H5I_ATTR_F = H5I_flags(6)
H5I_BADID_F = H5I_flags(7)
H5I_UNINIT_F = H5I_flags(8)
H5I_VFL_F = H5I_flags(9)
H5I_VOL_F = H5I_flags(10)
H5I_GENPROP_CLS_F = H5I_flags(11)
H5I_GENPROP_LST_F = H5I_flags(12)
H5I_ERROR_CLASS_F = H5I_flags(13)
H5I_ERROR_MSG_F = H5I_flags(14)
H5I_ERROR_STACK_F = H5I_flags(15)
H5I_NTYPES_F = H5I_flags(16)
H5I_INVALID_HID_F = H5I_flags(17)
!
! H5L flags
!
H5L_TYPE_ERROR_F = H5L_flags(1)
H5L_TYPE_HARD_F = H5L_flags(2)
H5L_TYPE_SOFT_F = H5L_flags(3)
H5L_TYPE_EXTERNAL_F = H5L_flags(4)
H5L_SAME_LOC_F = H5L_flags(5)
H5L_LINK_CLASS_T_VERS_F = H5L_flags(6)
!
! H5O flags
!
H5O_COPY_SHALLOW_HIERARCHY_F = h5o_flags(1)
H5O_COPY_EXPAND_SOFT_LINK_F = h5o_flags(2)
H5O_COPY_EXPAND_EXT_LINK_F = h5o_flags(3)
H5O_COPY_EXPAND_REFERENCE_F = h5o_flags(4)
H5O_COPY_WITHOUT_ATTR_FLAG_F = h5o_flags(5)
H5O_COPY_PRESERVE_NULL_FLAG_F = h5o_flags(6)
H5O_COPY_ALL_F = h5o_flags(7)
H5O_SHMESG_NONE_FLAG_F = h5o_flags(8)
H5O_SHMESG_SDSPACE_FLAG_F = h5o_flags(9)
H5O_SHMESG_DTYPE_FLAG_F = h5o_flags(10)
H5O_SHMESG_FILL_FLAG_F = h5o_flags(11)
H5O_SHMESG_PLINE_FLAG_F = h5o_flags(12)
H5O_SHMESG_ATTR_FLAG_F = h5o_flags(13)
H5O_SHMESG_ALL_FLAG_F = h5o_flags(14)
H5O_HDR_CHUNK0_SIZE_F = h5o_flags(15)
H5O_HDR_ATTR_CRT_ORDER_TRACK_F = h5o_flags(16)
H5O_HDR_ATTR_CRT_ORDER_INDEX_F = h5o_flags(17)
H5O_HDR_ATTR_STORE_PHASE_CHA_F = h5o_flags(18)
H5O_HDR_STORE_TIMES_F = h5o_flags(19)
H5O_HDR_ALL_FLAGS_F = h5o_flags(20)
H5O_SHMESG_MAX_NINDEXES_F = h5o_flags(21)
H5O_SHMESG_MAX_LIST_SIZE_F = h5o_flags(22)
H5O_TYPE_UNKNOWN_F = h5o_flags(23)
H5O_TYPE_GROUP_F = h5o_flags(24)
H5O_TYPE_DATASET_F = h5o_flags(25)
H5O_TYPE_NAMED_DATATYPE_F = h5o_flags(26)
H5O_TYPE_NTYPES_F = h5o_flags(27)
H5O_INFO_ALL_F = h5o_flags(28)
H5O_INFO_BASIC_F = h5o_flags(29)
H5O_INFO_TIME_F = h5o_flags(30)
H5O_INFO_NUM_ATTRS_F = h5o_flags(31)
H5O_INFO_HDR_F = h5o_flags(32)
H5O_INFO_META_SIZE_F = h5o_flags(33)
!
! H5P flags
!
H5P_FILE_CREATE_F = H5P_flags(1)
H5P_FILE_ACCESS_F = H5P_flags(2)
H5P_DATASET_CREATE_F = H5P_flags(3)
H5P_DATASET_XFER_F = H5P_flags(4)
H5P_FILE_MOUNT_F = H5P_flags(5)
H5P_DEFAULT_F = H5P_flags(6)
H5P_ROOT_F = H5P_flags(7)
H5P_OBJECT_CREATE_F = H5P_flags(8)
H5P_DATASET_ACCESS_F = H5P_flags(9)
H5P_GROUP_CREATE_F = H5P_flags(10)
H5P_GROUP_ACCESS_F = H5P_flags(11)
H5P_DATATYPE_CREATE_F = H5P_flags(12)
H5P_DATATYPE_ACCESS_F = H5P_flags(13)
H5P_STRING_CREATE_F = H5P_flags(14)
H5P_ATTRIBUTE_CREATE_F = H5P_flags(15)
H5P_OBJECT_COPY_F = H5P_flags(16)
H5P_LINK_CREATE_F = H5P_flags(17)
H5P_LINK_ACCESS_F = H5P_flags(18)
!
! H5P integers flags
!
H5P_CRT_ORDER_INDEXED_F = H5P_flags_int(1)
H5P_CRT_ORDER_TRACKED_F = H5P_flags_int(2)
!
! H5R flags
!
H5R_OBJECT_F = H5R_flags(1)
H5R_DATASET_REGION_F = H5R_flags(2)
!
! H5S flags
!
H5S_ALL_F = H5S_hid_flags(1)
H5S_UNLIMITED_F = H5S_hsize_flags(1)
H5S_SCALAR_F = H5S_flags(1)
H5S_SIMPLE_F = H5S_flags(2)
H5S_NULL_F = H5S_flags(3)
H5S_SELECT_SET_F = H5S_flags(4)
H5S_SELECT_OR_F = H5S_flags(5)
H5S_SELECT_NOOP_F = H5S_flags(6)
H5S_SELECT_AND_F = H5S_flags(7)
H5S_SELECT_XOR_F = H5S_flags(8)
H5S_SELECT_NOTB_F = H5S_flags(9)
H5S_SELECT_NOTA_F = H5S_flags(10)
H5S_SELECT_APPEND_F = H5S_flags(11)
H5S_SELECT_PREPEND_F = H5S_flags(12)
H5S_SELECT_INVALID_F = H5S_flags(13)
H5S_SEL_ERROR_F = H5S_flags(14)
H5S_SEL_NONE_F = H5S_flags(15)
H5S_SEL_POINTS_F = H5S_flags(16)
H5S_SEL_HYPERSLABS_F = H5S_flags(17)
H5S_SEL_ALL_F = H5S_flags(18)
!
! H5T flags declaration
!
H5T_NO_CLASS_F = H5T_flags(1)
H5T_INTEGER_F = H5T_flags(2)
H5T_FLOAT_F = H5T_flags(3)
H5T_TIME_F = H5T_flags(4)
H5T_STRING_F = H5T_flags(5)
H5T_BITFIELD_F = H5T_flags(6)
H5T_OPAQUE_F = H5T_flags(7)
H5T_COMPOUND_F = H5T_flags(8)
H5T_REFERENCE_F = H5T_flags(9)
H5T_ENUM_F = H5T_flags(10)
H5T_ORDER_LE_F = H5T_flags(11)
H5T_ORDER_BE_F = H5T_flags(12)
H5T_ORDER_MIXED_F = H5T_flags(13)
H5T_ORDER_VAX_F = H5T_flags(14)
H5T_ORDER_NONE_F = H5T_flags(15)
H5T_PAD_ZERO_F = H5T_flags(16)
H5T_PAD_ONE_F = H5T_flags(17)
H5T_PAD_BACKGROUND_F = H5T_flags(18)
H5T_PAD_ERROR_F = H5T_flags(19)
H5T_SGN_NONE_F = H5T_flags(20)
H5T_SGN_2_F = H5T_flags(21)
H5T_SGN_ERROR_F = H5T_flags(22)
H5T_NORM_IMPLIED_F = H5T_flags(23)
H5T_NORM_MSBSET_F = H5T_flags(24)
H5T_NORM_NONE_F = H5T_flags(25)
H5T_CSET_ASCII_F = H5T_flags(26)
H5T_CSET_UTF8_F = H5T_flags(27)
H5T_STR_NULLTERM_F = H5T_flags(28)
H5T_STR_NULLPAD_F = H5T_flags(29)
H5T_STR_SPACEPAD_F = H5T_flags(30)
H5T_STR_ERROR_F = H5T_flags(31)
H5T_VLEN_F = H5T_flags(32)
H5T_ARRAY_F = H5T_flags(33)
H5T_DIR_ASCEND_F = H5T_flags(34)
H5T_DIR_DESCEND_F = H5T_flags(35)
!
! H5Z flags
!
H5Z_FILTER_ERROR_F = H5Z_flags(1)
H5Z_FILTER_NONE_F = H5Z_flags(2)
H5Z_FILTER_DEFLATE_F = H5Z_flags(3)
H5Z_FILTER_SHUFFLE_F = H5Z_flags(4)
H5Z_FILTER_FLETCHER32_F = H5Z_flags(5)
H5Z_ERROR_EDC_F = H5Z_flags(6)
H5Z_DISABLE_EDC_F = H5Z_flags(7)
H5Z_ENABLE_EDC_F = H5Z_flags(8)
H5Z_NO_EDC_F = H5Z_flags(9)
H5Z_FILTER_SZIP_F = H5Z_flags(10)
H5Z_FLAG_OPTIONAL_F = H5Z_flags(11)
H5Z_FILTER_ENCODE_ENABLED_F = H5Z_flags(12)
H5Z_FILTER_DECODE_ENABLED_F = H5Z_flags(13)
H5Z_FILTER_ALL_F = H5Z_flags(14)
H5Z_FILTER_NBIT_F = H5Z_flags(15)
H5Z_FILTER_SCALEOFFSET_F = H5Z_flags(16)
H5Z_SO_FLOAT_DSCALE_F = H5Z_flags(17)
H5Z_SO_FLOAT_ESCALE_F = H5Z_flags(18)
H5Z_SO_INT_F = H5Z_flags(19)
H5Z_SO_INT_MINBITS_DEFAULT_F = H5Z_flags(20)
error = error + h5init1_flags_c(H5LIB_flags)
!
! H5 Library flags
!
H5_SZIP_EC_OM_F = H5LIB_flags(1)
H5_SZIP_NN_OM_F = H5LIB_flags(2)
CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, H5OPEN_NUM_OBJ_LOC, error)
H5OPEN_NUM_OBJ = H5OPEN_NUM_OBJ_LOC
END SUBROUTINE h5open_f
!>
!! \ingroup FH5
!!
!! \brief Closes HDF5 Fortran interface.
!!
!! \param error \fortran_error
!!
SUBROUTINE h5close_f(error)
USE H5F, ONLY : h5fget_obj_count_f, H5OPEN_NUM_OBJ
IMPLICIT NONE
INTEGER, INTENT(OUT) :: error
INTERFACE
INTEGER FUNCTION h5close_types_c(p_types, P_TYPES_LEN, &
f_types, F_TYPES_LEN, &
i_types, I_TYPES_LEN ) &
BIND(C,NAME='h5close_types_c')
IMPORT :: HID_T
INTEGER :: P_TYPES_LEN
INTEGER :: F_TYPES_LEN
INTEGER :: I_TYPES_LEN
INTEGER(HID_T), DIMENSION(1:P_TYPES_LEN) :: p_types
INTEGER(HID_T), DIMENSION(1:F_TYPES_LEN) :: f_types
INTEGER(HID_T), DIMENSION(1:I_TYPES_LEN) :: i_types
END FUNCTION h5close_types_c
END INTERFACE
! Check if h5close_f has already been called. Skip doing it again.
IF(H5OPEN_NUM_OBJ .EQ. 0) RETURN
error = h5close_types_c(predef_types, PREDEF_TYPES_LEN, &
floating_types, FLOATING_TYPES_LEN, &
integer_types, INTEGER_TYPES_LEN )
! Reset the number of open objects from h5open_f to zero
CALL h5fget_obj_count_f(INT(H5F_OBJ_ALL_F,HID_T), H5F_OBJ_ALL_F, H5OPEN_NUM_OBJ, error)
END SUBROUTINE h5close_f
!>
!! \ingroup FH5
!!
!! \brief Returns the HDF5 LIbrary release number
!!
!! \param majnum Major version of the library.
!! \param minnum Minor version of the library.
!! \param relnum Release version of the library.
!! \param error \fortran_error
!!
SUBROUTINE h5get_libversion_f(majnum, minnum, relnum, error)
IMPLICIT NONE
INTEGER, INTENT(OUT) :: majnum, minnum, relnum, error
INTERFACE
INTEGER FUNCTION h5get_libversion_c(majnum, minnum, relnum) &
BIND(C,NAME='h5get_libversion_c')
IMPLICIT NONE
INTEGER, INTENT(OUT) :: majnum, minnum, relnum
END FUNCTION h5get_libversion_c
END INTERFACE
error = h5get_libversion_c(majnum, minnum, relnum)
END SUBROUTINE h5get_libversion_f
!>
!! \ingroup FH5
!!
!! \brief Verifies that library versions are consistent.
!!
!! \param majnum Major version of the library.
!! \param minnum Minor version of the library.
!! \param relnum Release version of the library.
!! \param error \fortran_error
!!
SUBROUTINE h5check_version_f(majnum, minnum, relnum, error)
IMPLICIT NONE
INTEGER, INTENT(IN) :: majnum, minnum, relnum
INTEGER, INTENT(OUT) :: error
INTERFACE
INTEGER FUNCTION h5check_version_c(majnum, minnum, relnum) &
BIND(C,NAME='h5check_version_c')
IMPLICIT NONE
INTEGER, INTENT(IN) :: majnum, minnum, relnum
END FUNCTION h5check_version_c
END INTERFACE
error = h5check_version_c(majnum, minnum, relnum)
END SUBROUTINE h5check_version_f
!>
!! \ingroup FH5
!!
!! \brief Garbage collects on all free-lists of all types.
!!
!! \param error \fortran_error
!!
SUBROUTINE h5garbage_collect_f(error)
IMPLICIT NONE
INTEGER, INTENT(OUT) :: error
INTERFACE
INTEGER FUNCTION h5garbage_collect_c() BIND(C,NAME='h5garbage_collect_c')
IMPLICIT NONE
END FUNCTION h5garbage_collect_c
END INTERFACE
error = h5garbage_collect_c()
END SUBROUTINE h5garbage_collect_f
!>
!! \ingroup FH5
!!
!! \brief Instructs library not to install atexit cleanup routine.
!!
!! \param error \fortran_error
!!
SUBROUTINE h5dont_atexit_f(error)
IMPLICIT NONE
INTEGER, INTENT(OUT) :: error
INTERFACE
INTEGER FUNCTION h5dont_atexit_c() BIND(C,NAME='h5dont_atexit_c')
IMPLICIT NONE
END FUNCTION h5dont_atexit_c
END INTERFACE
error = h5dont_atexit_c()
END SUBROUTINE h5dont_atexit_f
!>
!! \ingroup FH5
!!
!! \brief Converts the KIND to the correct HDF type
!!
!! \param ikind Fortran KIND parameter.
!! \param flag Whether KIND is of type INTEGER or REAL:
!! \li H5_INTEGER_KIND - integer
!! \li H5_REAL_KIND - real
!! \result h5_type Returns the type.
!!
INTEGER(HID_T) FUNCTION h5kind_to_type(ikind, flag) RESULT(h5_type)
USE ISO_C_BINDING
IMPLICIT NONE
INTEGER, INTENT(IN) :: ikind
INTEGER, INTENT(IN) :: flag
INTEGER :: i
!#if H5_HAVE_Fortran_INTEGER_SIZEOF_16!=0
! ! (1) The array index assumes INTEGER*16 the last integer in the series, and
! ! (2) it should map to INTEGER*16 on most modern processors
! H5T_NATIVE_INTEGER_KIND(H5_FORTRAN_NUM_INTEGER_KINDS)=SELECTED_INT_KIND(36)
!#endif
h5_type = -1
IF(flag.EQ.H5_INTEGER_KIND)THEN
do_kind: DO i = 1, H5_FORTRAN_NUM_INTEGER_KINDS
IF(ikind.EQ.Fortran_INTEGER_AVAIL_KINDS(i))THEN
h5_type = H5T_NATIVE_INTEGER_KIND(i)
EXIT do_kind
ENDIF
END DO do_kind
ELSE IF(flag.EQ.H5_REAL_KIND)THEN
IF(ikind.EQ.KIND(1.0_C_FLOAT))THEN
h5_type = H5T_NATIVE_REAL_C_FLOAT
ELSE IF(ikind.EQ.KIND(1.0_C_DOUBLE))THEN
h5_type = H5T_NATIVE_REAL_C_DOUBLE
#if H5_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE!=0
ELSE IF(ikind.EQ.KIND(1.0_C_LONG_DOUBLE))THEN
h5_type = H5T_NATIVE_REAL_C_LONG_DOUBLE
#endif
#if H5_PAC_FC_MAX_REAL_PRECISION > 28
#if H5_HAVE_FLOAT128 == 1
ELSE
h5_type = H5T_NATIVE_FLOAT_128
#endif
#endif
ENDIF
ENDIF
END FUNCTION h5kind_to_type
!>
!! \ingroup FH5
!!
!! \brief Computes the offset in memory
!!
!! \param start Starting pointer address.
!! \param end Ending pointer address.
!!
!! \result offset Offset of a member within the derived type.
!!
FUNCTION h5offsetof(start,end) RESULT(offset)
IMPLICIT NONE
INTEGER(SIZE_T) :: offset
TYPE(C_PTR), VALUE, INTENT(IN) :: start, end
INTEGER(C_INTPTR_T) :: int_address_start, int_address_end
int_address_start = TRANSFER(start, int_address_start)
int_address_end = TRANSFER(end , int_address_end )
offset = int_address_end - int_address_start
END FUNCTION h5offsetof
!>
!! \ingroup FH5
!!
!! \brief Convert time_t structure (C) to Fortran DATE AND TIME storage format.
!!
!! \param stdtime_t Object of type time_t that contains a time value.
!! \result datetime A date/time array using Fortran conventions:
!! \li datetime(1) = year
!! \li datetime(2) = month
!! \li datetime(3) = day
!! \li datetime(4) = 0 ! time is expressed as UTC (or GMT timezone)
!! \li datetime(5) = hour
!! \li datetime(6) = minute
!! \li datetime(7) = second
!! \li datetime(8) = millisecond -- not available, assigned - HUGE(0)
!!
FUNCTION h5gmtime(stdtime_t) RESULT(datetime)
IMPLICIT NONE
INTEGER(KIND=TIME_T), INTENT(IN) :: stdtime_t
INTEGER, DIMENSION(1:8) :: datetime
TYPE(C_PTR) :: cptr
INTEGER(C_INT), DIMENSION(:), POINTER :: c_time
INTERFACE
FUNCTION gmtime(stdtime_t) BIND(C, NAME='gmtime')
IMPORT :: TIME_T, C_PTR
IMPLICIT NONE
INTEGER(KIND=TIME_T) :: stdtime_t
TYPE(C_PTR) :: gmtime
END FUNCTION gmtime
END INTERFACE
cptr = gmtime(stdtime_t)
CALL C_F_POINTER(cptr, c_time, [9])
datetime(1) = INT(c_time(6)+1900) ! year starts at 1900
datetime(2) = INT(c_time(5)+1) ! month starts at 0 in C
datetime(3) = INT(c_time(4)) ! day
datetime(4) = 0 ! time is expressed as UTC (or GMT timezone)
datetime(5) = INT(c_time(3)) ! hour
datetime(6) = INT(c_time(2)) ! minute
datetime(7) = INT(c_time(1)) ! second
datetime(8) = -32767 ! millisecond is not available, assign it -HUGE(0)
END FUNCTION h5gmtime
END MODULE H5LIB
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