1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/* NOTE!
*
* If you make any changes to H5LTparse.y, please run bin/genparser to
* recreate the output files.
*/
%{
#include <stdio.h>
#include <string.h>
#include <hdf5.h>
#include "H5private.h"
extern int yylex(void);
extern int yyerror(const char *);
#define STACK_SIZE 16
/*structure for compound type information*/
struct cmpd_info {
hid_t id; /*type ID*/
bool is_field; /*flag to lexer for compound member*/
bool first_memb; /*flag for first compound member*/
};
/*stack for nested compound type*/
static struct cmpd_info cmpd_stack[STACK_SIZE] = {
{0, 0, 1}, {0, 0, 1}, {0, 0, 1}, {0, 0, 1},
{0, 0, 1}, {0, 0, 1}, {0, 0, 1}, {0, 0, 1},
{0, 0, 1}, {0, 0, 1}, {0, 0, 1}, {0, 0, 1},
{0, 0, 1}, {0, 0, 1}, {0, 0, 1}, {0, 0, 1} };
static int csindex = -1; /*pointer to the top of compound stack*/
/*structure for array type information*/
struct arr_info {
hsize_t dims[H5S_MAX_RANK]; /*size of each dimension, limited to 32 dimensions*/
unsigned ndims; /*number of dimensions*/
bool is_dim; /*flag to lexer for dimension*/
};
/*stack for nested array type*/
static struct arr_info arr_stack[STACK_SIZE];
static int asindex = -1; /*pointer to the top of array stack*/
static H5T_str_t str_pad; /*variable for string padding*/
static H5T_cset_t str_cset; /*variable for string character set*/
static bool is_variable = 0; /*variable for variable-length string*/
static size_t str_size; /*variable for string size*/
static hid_t enum_id; /*type ID*/
static bool is_enum = 0; /*flag to lexer for enum type*/
static bool is_enum_memb = 0; /*flag to lexer for enum member*/
static char* enum_memb_symbol; /*enum member symbol string*/
%}
%union {
int ival; /*for integer token*/
char *sval; /*for name string*/
hid_t hid; /*for hid_t token*/
}
%token <hid> H5T_STD_I8BE_TOKEN H5T_STD_I8LE_TOKEN H5T_STD_I16BE_TOKEN H5T_STD_I16LE_TOKEN
%token <hid> H5T_STD_I32BE_TOKEN H5T_STD_I32LE_TOKEN H5T_STD_I64BE_TOKEN H5T_STD_I64LE_TOKEN
%token <hid> H5T_STD_U8BE_TOKEN H5T_STD_U8LE_TOKEN H5T_STD_U16BE_TOKEN H5T_STD_U16LE_TOKEN
%token <hid> H5T_STD_U32BE_TOKEN H5T_STD_U32LE_TOKEN H5T_STD_U64BE_TOKEN H5T_STD_U64LE_TOKEN
%token <hid> H5T_NATIVE_CHAR_TOKEN H5T_NATIVE_SCHAR_TOKEN H5T_NATIVE_UCHAR_TOKEN
%token <hid> H5T_NATIVE_SHORT_TOKEN H5T_NATIVE_USHORT_TOKEN H5T_NATIVE_INT_TOKEN H5T_NATIVE_UINT_TOKEN
%token <hid> H5T_NATIVE_LONG_TOKEN H5T_NATIVE_ULONG_TOKEN H5T_NATIVE_LLONG_TOKEN H5T_NATIVE_ULLONG_TOKEN
%token <hid> H5T_IEEE_F16BE_TOKEN H5T_IEEE_F16LE_TOKEN
%token <hid> H5T_IEEE_F32BE_TOKEN H5T_IEEE_F32LE_TOKEN H5T_IEEE_F64BE_TOKEN H5T_IEEE_F64LE_TOKEN
%token <hid> H5T_NATIVE_FLOAT16_TOKEN H5T_NATIVE_FLOAT_TOKEN H5T_NATIVE_DOUBLE_TOKEN H5T_NATIVE_LDOUBLE_TOKEN
%token <ival> H5T_STRING_TOKEN STRSIZE_TOKEN STRPAD_TOKEN CSET_TOKEN CTYPE_TOKEN H5T_VARIABLE_TOKEN
%token <ival> H5T_STR_NULLTERM_TOKEN H5T_STR_NULLPAD_TOKEN H5T_STR_SPACEPAD_TOKEN
%token <ival> H5T_CSET_ASCII_TOKEN H5T_CSET_UTF8_TOKEN H5T_C_S1_TOKEN H5T_FORTRAN_S1_TOKEN
%token <ival> H5T_OPAQUE_TOKEN OPQ_SIZE_TOKEN OPQ_TAG_TOKEN
%token <ival> H5T_COMPOUND_TOKEN
%token <ival> H5T_ENUM_TOKEN
%token <ival> H5T_ARRAY_TOKEN
%token <ival> H5T_VLEN_TOKEN
%token <sval> STRING
%token <ival> NUMBER
%token <ival> '{' '}' '[' ']' ':' ';'
%%
start : { memset(arr_stack, 0, STACK_SIZE*sizeof(struct arr_info)); /*initialize here?*/ }
| ddl_type { return $<hid>$;}
;
ddl_type : atomic_type
| compound_type
| array_type
| vlen_type
;
atomic_type : integer_type
| fp_type
| string_type
| enum_type
| opaque_type
;
integer_type : H5T_STD_I8BE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_I8BE); }
| H5T_STD_I8LE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_I8LE); }
| H5T_STD_I16BE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_I16BE); }
| H5T_STD_I16LE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_I16LE); }
| H5T_STD_I32BE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_I32BE); }
| H5T_STD_I32LE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_I32LE); }
| H5T_STD_I64BE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_I64BE); }
| H5T_STD_I64LE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_I64LE); }
| H5T_STD_U8BE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_U8BE); }
| H5T_STD_U8LE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_U8LE); }
| H5T_STD_U16BE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_U16BE); }
| H5T_STD_U16LE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_U16LE); }
| H5T_STD_U32BE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_U32BE); }
| H5T_STD_U32LE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_U32LE); }
| H5T_STD_U64BE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_U64BE); }
| H5T_STD_U64LE_TOKEN { $<hid>$ = H5Tcopy(H5T_STD_U64LE); }
| H5T_NATIVE_CHAR_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_CHAR); }
| H5T_NATIVE_SCHAR_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_SCHAR); }
| H5T_NATIVE_UCHAR_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_UCHAR); }
| H5T_NATIVE_SHORT_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_SHORT); }
| H5T_NATIVE_USHORT_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_USHORT); }
| H5T_NATIVE_INT_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_INT); }
| H5T_NATIVE_UINT_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_UINT); }
| H5T_NATIVE_LONG_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_LONG); }
| H5T_NATIVE_ULONG_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_ULONG); }
| H5T_NATIVE_LLONG_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_LLONG); }
| H5T_NATIVE_ULLONG_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_ULLONG); }
;
fp_type : H5T_IEEE_F16BE_TOKEN { $<hid>$ = H5Tcopy(H5T_IEEE_F16BE); }
| H5T_IEEE_F16LE_TOKEN { $<hid>$ = H5Tcopy(H5T_IEEE_F16LE); }
| H5T_IEEE_F32BE_TOKEN { $<hid>$ = H5Tcopy(H5T_IEEE_F32BE); }
| H5T_IEEE_F32LE_TOKEN { $<hid>$ = H5Tcopy(H5T_IEEE_F32LE); }
| H5T_IEEE_F64BE_TOKEN { $<hid>$ = H5Tcopy(H5T_IEEE_F64BE); }
| H5T_IEEE_F64LE_TOKEN { $<hid>$ = H5Tcopy(H5T_IEEE_F64LE); }
| H5T_NATIVE_FLOAT16_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_FLOAT16); }
| H5T_NATIVE_FLOAT_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_FLOAT); }
| H5T_NATIVE_DOUBLE_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_DOUBLE); }
| H5T_NATIVE_LDOUBLE_TOKEN { $<hid>$ = H5Tcopy(H5T_NATIVE_LDOUBLE); }
;
compound_type : H5T_COMPOUND_TOKEN
{ csindex++; cmpd_stack[csindex].id = H5Tcreate(H5T_COMPOUND, 1); /*temporarily set size to 1*/ }
'{' memb_list '}'
{ $<hid>$ = cmpd_stack[csindex].id;
cmpd_stack[csindex].id = 0;
cmpd_stack[csindex].first_memb = 1;
csindex--;
}
;
memb_list :
| memb_list memb_def
;
memb_def : ddl_type { cmpd_stack[csindex].is_field = 1; /*notify lexer a compound member is parsed*/ }
field_name field_offset ';'
{
size_t origin_size, new_size;
hid_t dtype_id = cmpd_stack[csindex].id;
/*Adjust size and insert member, consider both member size and offset.*/
if(cmpd_stack[csindex].first_memb) { /*reclaim the size 1 temporarily set*/
new_size = H5Tget_size($<hid>1) + $<ival>4;
H5Tset_size(dtype_id, new_size);
/*member name is saved in yylval.sval by lexer*/
H5Tinsert(dtype_id, $<sval>3, $<ival>4, $<hid>1);
cmpd_stack[csindex].first_memb = 0;
} else {
origin_size = H5Tget_size(dtype_id);
if($<ival>4 == 0) {
new_size = origin_size + H5Tget_size($<hid>1);
H5Tset_size(dtype_id, new_size);
H5Tinsert(dtype_id, $<sval>3, origin_size, $<hid>1);
} else {
new_size = $<ival>4 + H5Tget_size($<hid>1);
H5Tset_size(dtype_id, new_size);
H5Tinsert(dtype_id, $<sval>3, $<ival>4, $<hid>1);
}
}
if($<sval>3) {
free($<sval>3);
$<sval>3 = NULL;
}
cmpd_stack[csindex].is_field = 0;
H5Tclose($<hid>1);
new_size = H5Tget_size(dtype_id);
}
;
field_name : STRING
{
$<sval>$ = strdup(yylval.sval);
free(yylval.sval);
yylval.sval = NULL;
}
;
field_offset : /*empty*/
{ $<ival>$ = 0; }
| ':' offset
{ $<ival>$ = yylval.ival; }
;
offset : NUMBER
;
array_type : H5T_ARRAY_TOKEN { asindex++; /*pushd onto the stack*/ }
'{' dim_list ddl_type '}'
{
$<hid>$ = H5Tarray_create2($<hid>5, arr_stack[asindex].ndims, arr_stack[asindex].dims);
arr_stack[asindex].ndims = 0;
asindex--;
H5Tclose($<hid>5);
}
;
dim_list :
| dim_list dim
;
dim : '[' { arr_stack[asindex].is_dim = 1; /*notice lexer of dimension size*/ }
dimsize { unsigned ndims = arr_stack[asindex].ndims;
arr_stack[asindex].dims[ndims] = (hsize_t)yylval.ival;
arr_stack[asindex].ndims++;
arr_stack[asindex].is_dim = 0;
}
']'
;
dimsize : NUMBER
;
vlen_type : H5T_VLEN_TOKEN '{' ddl_type '}'
{ $<hid>$ = H5Tvlen_create($<hid>3); H5Tclose($<hid>3); }
;
opaque_type : H5T_OPAQUE_TOKEN
'{'
OPQ_SIZE_TOKEN opaque_size ';'
{
size_t size = (size_t)yylval.ival;
$<hid>$ = H5Tcreate(H5T_OPAQUE, size);
}
OPQ_TAG_TOKEN opaque_tag ';'
{
H5Tset_tag($<hid>6, yylval.sval);
free(yylval.sval);
yylval.sval = NULL;
}
'}' { $<hid>$ = $<hid>6; }
;
opaque_size : NUMBER
;
opaque_tag : STRING
;
string_type : H5T_STRING_TOKEN
'{'
STRSIZE_TOKEN strsize ';'
{
if($<ival>4 == H5T_VARIABLE_TOKEN)
is_variable = 1;
else
str_size = yylval.ival;
}
STRPAD_TOKEN strpad ';'
{
if($<ival>8 == H5T_STR_NULLTERM_TOKEN)
str_pad = H5T_STR_NULLTERM;
else if($<ival>8 == H5T_STR_NULLPAD_TOKEN)
str_pad = H5T_STR_NULLPAD;
else if($<ival>8 == H5T_STR_SPACEPAD_TOKEN)
str_pad = H5T_STR_SPACEPAD;
}
CSET_TOKEN cset ';'
{
if($<ival>12 == H5T_CSET_ASCII_TOKEN)
str_cset = H5T_CSET_ASCII;
else if($<ival>12 == H5T_CSET_UTF8_TOKEN)
str_cset = H5T_CSET_UTF8;
}
CTYPE_TOKEN ctype ';'
{
if($<hid>16 == H5T_C_S1_TOKEN)
$<hid>$ = H5Tcopy(H5T_C_S1);
else if($<hid>16 == H5T_FORTRAN_S1_TOKEN)
$<hid>$ = H5Tcopy(H5T_FORTRAN_S1);
}
'}'
{
hid_t str_id = $<hid>18;
/*set string size*/
if(is_variable) {
H5Tset_size(str_id, H5T_VARIABLE);
is_variable = 0;
} else
H5Tset_size(str_id, str_size);
/*set string padding and character set*/
H5Tset_strpad(str_id, str_pad);
H5Tset_cset(str_id, str_cset);
$<hid>$ = str_id;
}
;
strsize : H5T_VARIABLE_TOKEN {$<ival>$ = H5T_VARIABLE_TOKEN;}
| NUMBER
;
strpad : H5T_STR_NULLTERM_TOKEN {$<ival>$ = H5T_STR_NULLTERM_TOKEN;}
| H5T_STR_NULLPAD_TOKEN {$<ival>$ = H5T_STR_NULLPAD_TOKEN;}
| H5T_STR_SPACEPAD_TOKEN {$<ival>$ = H5T_STR_SPACEPAD_TOKEN;}
;
cset : H5T_CSET_ASCII_TOKEN {$<ival>$ = H5T_CSET_ASCII_TOKEN;}
| H5T_CSET_UTF8_TOKEN {$<ival>$ = H5T_CSET_UTF8_TOKEN;}
;
ctype : H5T_C_S1_TOKEN {$<hid>$ = H5T_C_S1_TOKEN;}
| H5T_FORTRAN_S1_TOKEN {$<hid>$ = H5T_FORTRAN_S1_TOKEN;}
;
enum_type : H5T_ENUM_TOKEN '{' integer_type ';'
{ is_enum = 1; enum_id = H5Tenum_create($<hid>3); H5Tclose($<hid>3); }
enum_list '}'
{ is_enum = 0; /*reset*/ $<hid>$ = enum_id; }
;
enum_list :
| enum_list enum_def
;
enum_def : enum_symbol {
is_enum_memb = 1; /*indicate member of enum*/
enum_memb_symbol = strdup(yylval.sval);
free(yylval.sval);
yylval.sval = NULL;
}
enum_val ';'
{
char char_val=(char)yylval.ival;
short short_val=(short)yylval.ival;
int int_val=(int)yylval.ival;
long long_val=(long)yylval.ival;
long long llong_val=(long long)yylval.ival;
hid_t super = H5Tget_super(enum_id);
hid_t native = H5Tget_native_type(super, H5T_DIR_ASCEND);
H5T_order_t super_order = H5Tget_order(super);
H5T_order_t native_order = H5Tget_order(native);
if(is_enum && is_enum_memb) { /*if it's an enum member*/
/*To handle machines of different endianness*/
if(H5Tequal(native, H5T_NATIVE_SCHAR) || H5Tequal(native, H5T_NATIVE_UCHAR)) {
if(super_order != native_order)
H5Tconvert(native, super, 1, &char_val, NULL, H5P_DEFAULT);
H5Tenum_insert(enum_id, enum_memb_symbol, &char_val);
} else if(H5Tequal(native, H5T_NATIVE_SHORT) || H5Tequal(native, H5T_NATIVE_USHORT)) {
if(super_order != native_order)
H5Tconvert(native, super, 1, &short_val, NULL, H5P_DEFAULT);
H5Tenum_insert(enum_id, enum_memb_symbol, &short_val);
} else if(H5Tequal(native, H5T_NATIVE_INT) || H5Tequal(native, H5T_NATIVE_UINT)) {
if(super_order != native_order)
H5Tconvert(native, super, 1, &int_val, NULL, H5P_DEFAULT);
H5Tenum_insert(enum_id, enum_memb_symbol, &int_val);
} else if(H5Tequal(native, H5T_NATIVE_LONG) || H5Tequal(native, H5T_NATIVE_ULONG)) {
if(super_order != native_order)
H5Tconvert(native, super, 1, &long_val, NULL, H5P_DEFAULT);
H5Tenum_insert(enum_id, enum_memb_symbol, &long_val);
} else if(H5Tequal(native, H5T_NATIVE_LLONG) || H5Tequal(native, H5T_NATIVE_ULLONG)) {
if(super_order != native_order)
H5Tconvert(native, super, 1, &llong_val, NULL, H5P_DEFAULT);
H5Tenum_insert(enum_id, enum_memb_symbol, &llong_val);
}
is_enum_memb = 0;
if(enum_memb_symbol) free(enum_memb_symbol);
}
H5Tclose(super);
H5Tclose(native);
}
;
enum_symbol : STRING
;
enum_val : NUMBER
;
|
