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|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "H5PTprivate.h"
#include "H5TBprivate.h"
/* Packet Table private data */
typedef struct {
hid_t dset_id; /* The ID of the dataset containing this table */
hid_t type_id; /* The ID of the packet table's native datatype */
hsize_t current_index; /* The index of the packet that get_next_packet will read next */
hsize_t size; /* The number of packets currently contained in this table */
} htbl_t;
static hsize_t H5PT_ptable_count = 0;
static H5I_type_t H5PT_ptable_id_type = H5I_UNINIT;
#define H5PT_HASH_TABLE_SIZE 64
/* Packet Table private functions */
static herr_t H5PT_free_id(void *id, void **_ctx);
static herr_t H5PT_close(htbl_t *table);
static herr_t H5PT_create_index(htbl_t *table_id);
static herr_t H5PT_set_index(htbl_t *table_id, hsize_t pt_index);
static herr_t H5PT_get_index(htbl_t *table_id, hsize_t *pt_index);
/*-------------------------------------------------------------------------
*
* Create/Open/Close functions
*
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* Function: H5PTcreate
*
* Purpose: Creates a dataset containing a table and returns the Identifier
* of the table. (Copied mostly from H5PTcreate_fl)
*
* Return: Success: table ID, Failure: FAIL
*
* Programmer: Nat Furrer (Author of H5PTcreate_fl)
* James Laird (Author of H5PTcreate_fl)
*
* Date: March 12, 2004
*
* Comments: This function does not handle fill data
* currently. Fill data is not necessary because the
* table is initially of size 0.
*
*-------------------------------------------------------------------------
*/
hid_t
H5PTcreate(hid_t loc_id, const char *dset_name, hid_t dtype_id, hsize_t chunk_size, hid_t plist_id)
{
htbl_t *table = NULL;
hid_t dset_id = H5I_INVALID_HID;
hid_t space_id = H5I_INVALID_HID;
hid_t plistcopy_id = H5I_INVALID_HID;
hsize_t dims[1];
hsize_t dims_chunk[1];
hsize_t maxdims[1];
hid_t ret_value = H5I_INVALID_HID;
/* check the arguments */
if (dset_name == NULL) {
goto error;
}
/* Register the packet table ID type if this is the first table created */
if (H5PT_ptable_id_type < 0)
if ((H5PT_ptable_id_type =
H5Iregister_type((size_t)H5PT_HASH_TABLE_SIZE, 0, (H5I_free_t)H5PT_free_id)) < 0)
goto error;
/* Get memory for the table identifier */
table = (htbl_t *)malloc(sizeof(htbl_t));
if (table == NULL) {
goto error;
}
table->dset_id = H5I_INVALID_HID;
table->type_id = H5I_INVALID_HID;
/* Create a simple data space with unlimited size */
dims[0] = 0;
dims_chunk[0] = chunk_size;
maxdims[0] = H5S_UNLIMITED;
if ((space_id = H5Screate_simple(1, dims, maxdims)) < 0)
goto error;
/* Modify dataset creation properties to enable chunking */
if (plist_id == H5P_DEFAULT) {
plistcopy_id = H5Pcreate(H5P_DATASET_CREATE);
}
else {
plistcopy_id = H5Pcopy(plist_id);
}
if (chunk_size > 0) {
if (H5Pset_chunk(plistcopy_id, 1, dims_chunk) < 0)
goto error;
}
/* Create the dataset. */
if ((dset_id =
H5Dcreate2(loc_id, dset_name, dtype_id, space_id, H5P_DEFAULT, plistcopy_id, H5P_DEFAULT)) < 0)
goto error;
/* Create the table identifier */
table->dset_id = dset_id;
/* Terminate access to the data space. */
if (H5Sclose(space_id) < 0)
goto error;
/* End access to the property list */
if (H5Pclose(plistcopy_id) < 0)
goto error;
/* Make a copy of caller's datatype and save it in the table structure.
It will be closed when the table is closed */
if ((table->type_id = H5Tcopy(dtype_id)) < 0)
goto error;
H5PT_create_index(table);
table->size = 0;
/* Get an ID for this table */
ret_value = H5Iregister(H5PT_ptable_id_type, table);
if (ret_value != H5I_INVALID_HID)
H5PT_ptable_count++;
else
H5PT_close(table);
return ret_value;
error:
if (space_id != H5I_INVALID_HID)
H5Sclose(space_id);
if (plistcopy_id != H5I_INVALID_HID)
H5Pclose(plistcopy_id);
if (dset_id != H5I_INVALID_HID)
H5Dclose(dset_id);
if (table) {
if (table->type_id != H5I_INVALID_HID)
H5Tclose(table->type_id);
free(table);
}
return ret_value;
} /* H5PTcreate */
/*-------------------------------------------------------------------------
* Function: H5PTcreate_fl
*
* Purpose: Creates a dataset containing a table and returns the Identifier
* of the table.
*
* Return: Success: table ID, Failure: Negative
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 12, 2004
*
* Comments: This function does not handle fill data
* currently. Fill data is not necessary because the
* table is initially of size 0.
*
*-------------------------------------------------------------------------
*/
hid_t
H5PTcreate_fl(hid_t loc_id, const char *dset_name, hid_t dtype_id, hsize_t chunk_size, int compression)
{
htbl_t *table = NULL;
hid_t dset_id = H5I_INVALID_HID;
hid_t space_id = H5I_INVALID_HID;
hid_t plist_id = H5I_INVALID_HID;
hsize_t dims[1];
hsize_t dims_chunk[1];
hsize_t maxdims[1];
hid_t ret_value = H5I_INVALID_HID;
/* check the arguments */
if (dset_name == NULL) {
goto error;
}
/* Register the packet table ID type if this is the first table created */
if (H5PT_ptable_id_type < 0)
if ((H5PT_ptable_id_type =
H5Iregister_type((size_t)H5PT_HASH_TABLE_SIZE, 0, (H5I_free_t)H5PT_free_id)) < 0)
goto error;
/* Get memory for the table identifier */
table = (htbl_t *)malloc(sizeof(htbl_t));
if (table == NULL) {
goto error;
}
table->dset_id = H5I_INVALID_HID;
table->type_id = H5I_INVALID_HID;
/* Create a simple data space with unlimited size */
dims[0] = 0;
dims_chunk[0] = chunk_size;
maxdims[0] = H5S_UNLIMITED;
if ((space_id = H5Screate_simple(1, dims, maxdims)) < 0)
goto error;
/* Modify dataset creation properties to enable chunking */
plist_id = H5Pcreate(H5P_DATASET_CREATE);
if (H5Pset_chunk(plist_id, 1, dims_chunk) < 0)
goto error;
if (compression >= 0 && compression <= 9)
if (H5Pset_deflate(plist_id, (unsigned)compression) < 0)
goto error;
/* Create the dataset. */
if ((dset_id = H5Dcreate2(loc_id, dset_name, dtype_id, space_id, H5P_DEFAULT, plist_id, H5P_DEFAULT)) < 0)
goto error;
/* Create the table identifier */
table->dset_id = dset_id;
/* Terminate access to the data space. */
if (H5Sclose(space_id) < 0)
goto error;
/* End access to the property list */
if (H5Pclose(plist_id) < 0)
goto error;
/* Make a copy of caller's datatype and save it in the table structure.
It will be closed when the table is closed */
if ((table->type_id = H5Tcopy(dtype_id)) < 0)
goto error;
H5PT_create_index(table);
table->size = 0;
/* Get an ID for this table */
ret_value = H5Iregister(H5PT_ptable_id_type, table);
if (ret_value != H5I_INVALID_HID)
H5PT_ptable_count++;
else
H5PT_close(table);
return ret_value;
error:
if (space_id != H5I_INVALID_HID)
H5Sclose(space_id);
if (plist_id != H5I_INVALID_HID)
H5Pclose(plist_id);
if (dset_id != H5I_INVALID_HID)
H5Dclose(dset_id);
if (table) {
if (table->type_id != H5I_INVALID_HID)
H5Tclose(table->type_id);
free(table);
}
return ret_value;
} /* H5PTcreate_fl */
/*-------------------------------------------------------------------------
* Function: H5PTopen
*
* Purpose: Opens a dataset containing a table and returns the Identifier
* of the table.
*
* Return: Success: table ID, Failure: Negative
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 10, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
hid_t
H5PTopen(hid_t loc_id, const char *dset_name)
{
hid_t type_id = H5I_INVALID_HID;
hid_t space_id = H5I_INVALID_HID;
htbl_t *table = NULL;
hsize_t dims[1];
hid_t ret_value = H5I_INVALID_HID;
/* check the arguments */
if (dset_name == NULL) {
goto error;
}
/* Register the packet table ID type if this is the first table created */
if (H5PT_ptable_id_type < 0)
if ((H5PT_ptable_id_type =
H5Iregister_type((size_t)H5PT_HASH_TABLE_SIZE, 0, (H5I_free_t)H5PT_free_id)) < 0)
goto error;
table = (htbl_t *)malloc(sizeof(htbl_t));
if (table == NULL) {
goto error;
}
table->dset_id = H5I_INVALID_HID;
table->type_id = H5I_INVALID_HID;
/* Open the dataset */
if ((table->dset_id = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
goto error;
/* Get the dataset's disk datatype */
if ((type_id = H5Dget_type(table->dset_id)) < 0)
goto error;
/* Make a copy of the datatype obtained and save it in the table structure.
It will be closed when the table is closed */
if ((table->type_id = H5Tcopy(type_id)) < 0)
goto error;
/* Close the disk datatype */
if (H5Tclose(type_id) < 0)
goto error;
type_id = H5I_INVALID_HID;
/* Initialize the current record pointer */
if ((H5PT_create_index(table)) < 0)
goto error;
/* Get number of records in table */
if ((space_id = H5Dget_space(table->dset_id)) < 0)
goto error;
if (H5Sget_simple_extent_dims(space_id, dims, NULL) < 0)
goto error;
if (H5Sclose(space_id) < 0)
goto error;
space_id = H5I_INVALID_HID;
table->size = dims[0];
/* Get an ID for this table */
ret_value = H5Iregister(H5PT_ptable_id_type, table);
if (ret_value != H5I_INVALID_HID)
H5PT_ptable_count++;
else
H5PT_close(table);
return ret_value;
error:
if (type_id != H5I_INVALID_HID)
H5Dclose(type_id);
if (space_id != H5I_INVALID_HID)
H5Sclose(space_id);
if (table) {
if (table->type_id != H5I_INVALID_HID)
H5Tclose(table->type_id);
if (table->dset_id != H5I_INVALID_HID)
H5Dclose(table->dset_id);
free(table);
}
return ret_value;
} /* H5PTopen */
/*-------------------------------------------------------------------------
* Function: H5PT_free_id
*
* Purpose: Free an id. Callback for H5Iregister_type.
*
* Return: Success: SUCCEED, Failure: N/A
*-------------------------------------------------------------------------
*/
static herr_t
H5PT_free_id(void *id, void H5_ATTR_UNUSED **_ctx)
{
free(id);
return SUCCEED;
}
/*-------------------------------------------------------------------------
* Function: H5PT_close
*
* Purpose: Closes a table (i.e. cleans up all open resources used by a
* table).
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 10, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PT_close(htbl_t *table)
{
if (table == NULL)
goto error;
/* Close the dataset */
if (H5Dclose(table->dset_id) < 0)
goto error;
/* Close the memory datatype */
if (H5Tclose(table->type_id) < 0)
goto error;
free(table);
return SUCCEED;
error:
if (table) {
H5E_BEGIN_TRY
H5Dclose(table->dset_id);
H5Tclose(table->type_id);
H5E_END_TRY
free(table);
}
return FAIL;
}
/*-------------------------------------------------------------------------
* Function: H5PTclose
*
* Purpose: Closes a table (i.e. cleans up all open resources used by a
* table).
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: April 21, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTclose(hid_t table_id)
{
htbl_t *table;
/* Remove the ID from the library */
if ((table = (htbl_t *)H5Iremove_verify(table_id, H5PT_ptable_id_type)) == NULL)
goto error;
/* If the library found the table, remove it */
if (H5PT_close(table) < 0)
goto error;
/* One less packet table open */
H5PT_ptable_count--;
/* Remove the packet table type ID if no more packet */
/* tables are open */
if (H5PT_ptable_count == 0) {
H5Idestroy_type(H5PT_ptable_id_type);
H5PT_ptable_id_type = H5I_UNINIT;
}
return SUCCEED;
error:
return FAIL;
}
/*-------------------------------------------------------------------------
*
* Write functions
*
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* Function: H5PTappend
*
* Purpose: Appends packets to the end of a packet table
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 12, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTappend(hid_t table_id, size_t nrecords, const void *data)
{
htbl_t *table;
/* Find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
goto error;
/* If we are asked to write 0 records, just do nothing */
if (nrecords == 0)
return SUCCEED;
if ((H5TB_common_append_records(table->dset_id, table->type_id, nrecords, table->size, data)) < 0)
goto error;
/* Update table size */
table->size += nrecords;
return SUCCEED;
error:
return FAIL;
}
/*-------------------------------------------------------------------------
*
* Read functions
*
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* Function: H5PTget_next
*
* Purpose: Reads packets starting at the current index and updates
* that index
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 10, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTget_next(hid_t table_id, size_t nrecords, void *data)
{
htbl_t *table;
/* Find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
goto error;
/* If nrecords == 0, do nothing */
if (nrecords == 0)
return SUCCEED;
if ((H5TB_common_read_records(table->dset_id, table->type_id, table->current_index, nrecords, table->size,
data)) < 0)
goto error;
/* Update the current index */
table->current_index += nrecords;
return SUCCEED;
error:
return FAIL;
}
/*-------------------------------------------------------------------------
* Function: H5PTread_packets
*
* Purpose: Reads packets from anywhere in a packet table
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 12, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTread_packets(hid_t table_id, hsize_t start, size_t nrecords, void *data)
{
htbl_t *table;
/* find the table struct from its ID */
table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type);
if (table == NULL)
goto error;
/* If nrecords == 0, do nothing */
if (nrecords == 0)
return SUCCEED;
if (H5TB_common_read_records(table->dset_id, table->type_id, start, nrecords, table->size, data) < 0)
goto error;
return SUCCEED;
error:
return FAIL;
}
/*-------------------------------------------------------------------------
*
* Table attribute functions
*
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* Function: H5PT_create_index, H5PT_set_index, H5PT_get_index
*
* Purpose: Resets, sets, and gets the current record index for a packet table
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 12, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PT_create_index(htbl_t *table)
{
if (table != NULL) {
table->current_index = 0;
return SUCCEED;
}
return FAIL;
}
static herr_t
H5PT_set_index(htbl_t *table, hsize_t pt_index)
{
/* Ensure index is valid */
if (table != NULL) {
if (pt_index < table->size) {
table->current_index = pt_index;
return SUCCEED;
}
}
return FAIL;
}
static herr_t
H5PT_get_index(htbl_t *table, hsize_t *pt_index)
{
/* Ensure index is valid */
if (table != NULL) {
if (pt_index)
*pt_index = table->current_index;
return SUCCEED;
}
return FAIL;
}
/*-------------------------------------------------------------------------
* Function: H5PTcreate_index, H5PTset_index, H5PTget_index
*
* Purpose: Resets, sets, and gets the current record index for a packet table
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: April 23, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTcreate_index(hid_t table_id)
{
htbl_t *table;
/* find the table struct from its ID */
if ((table = (htbl_t *)(htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
return FAIL;
return H5PT_create_index(table);
}
herr_t
H5PTset_index(hid_t table_id, hsize_t pt_index)
{
htbl_t *table;
/* find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
return FAIL;
return H5PT_set_index(table, pt_index);
}
herr_t
H5PTget_index(hid_t table_id, hsize_t *pt_index)
{
htbl_t *table;
/* find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
return FAIL;
return H5PT_get_index(table, pt_index);
}
/*-------------------------------------------------------------------------
*
* Inquiry functions
*
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* Function: H5PTget_num_packets
*
* Purpose: Returns by reference the number of packets in the packet table
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 12, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTget_num_packets(hid_t table_id, hsize_t *nrecords)
{
htbl_t *table;
/* find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
goto error;
if (nrecords)
*nrecords = table->size;
return SUCCEED;
error:
return FAIL;
}
/*-------------------------------------------------------------------------
* Function: H5PTis_valid
*
* Purpose: Validates a table identifier
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: March 12, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTis_valid(hid_t table_id)
{
/* find the table struct from its ID */
if (H5Iobject_verify(table_id, H5PT_ptable_id_type) == NULL)
return FAIL;
return SUCCEED;
}
/*-------------------------------------------------------------------------
* Function: H5PTis_varlen
*
* Purpose: Returns 1 if a table_id corresponds to a packet table of variable-
* length records or 0 for fixed-length records.
*
* Return: True: 1, False: 0, Failure: FAIL
*
* Programmer: Nat Furrer
* James Laird
*
* Date: April 14, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTis_varlen(hid_t table_id)
{
H5T_class_t type;
htbl_t *table;
/* find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
goto error;
if ((type = H5Tget_class(table->type_id)) == H5T_NO_CLASS)
goto error;
if (type == H5T_VLEN)
return 1;
else
return 0;
error:
return FAIL;
}
/*-------------------------------------------------------------------------
*
* Memory Management functions
*
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* Function: H5PTfree_vlen_buff
*
* Purpose: Frees memory used when reading from a variable length packet
* table.
*
* Return: Success: SUCCEED, Failure: FAIL
* -2 if memory was reclaimed but another error occurred
*
* Programmer: Nat Furrer
* James Laird
*
* Date: April 12, 2004
*
* Comments:
*
*-------------------------------------------------------------------------
*/
herr_t
H5PTfree_vlen_buff(hid_t table_id, size_t _bufflen, void *buff)
{
hid_t space_id = H5I_INVALID_HID;
htbl_t *table;
hsize_t bufflen = _bufflen;
herr_t ret_value;
/* find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
goto error;
if ((space_id = H5Screate_simple(1, &bufflen, NULL)) < 0)
goto error;
/* Free the memory. If this succeeds, ret_value should be 0. */
if ((ret_value = H5Treclaim(table->type_id, space_id, H5P_DEFAULT, buff)) < 0)
goto error;
/* If the dataspace cannot be closed, return -2 to indicate that memory */
/* was freed successfully but an error still occurred. */
if (H5Sclose(space_id) < 0)
return -2;
return ret_value;
error:
H5E_BEGIN_TRY
H5Sclose(space_id);
H5E_END_TRY
return FAIL;
} /* H5PTfree_vlen_buff */
/*-------------------------------------------------------------------------
*
* Accessor functions
*
*-------------------------------------------------------------------------
*/
/*-------------------------------------------------------------------------
* Function: H5PTget_dataset
*
* Purpose: Returns the backend dataset of this packet table
*
* Return: Success: SUCCEED, Failure: FAIL
*
* Programmer: User's patch 0003, HDFFV-8623. -BMR
*
* Date: Feb 10, 2016
*
* Comments:
*
*-------------------------------------------------------------------------
*/
hid_t
H5PTget_dataset(hid_t table_id)
{
htbl_t *table;
hid_t ret_value = H5I_INVALID_HID;
/* find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
goto error;
ret_value = table->dset_id;
error:
return ret_value;
}
/*-------------------------------------------------------------------------
* Function: H5PTget_type
*
* Purpose: Returns the backend type of this packet table
*
* Return: Success: datatype ID, Failure: H5I_INVALID_HID
*
* Programmer: User's patch 0003, HDFFV-8623. -BMR
*
* Date: Feb 10, 2016
*
* Comments:
*
*-------------------------------------------------------------------------
*/
hid_t
H5PTget_type(hid_t table_id)
{
htbl_t *table;
hid_t ret_value = H5I_INVALID_HID;
/* find the table struct from its ID */
if ((table = (htbl_t *)H5Iobject_verify(table_id, H5PT_ptable_id_type)) == NULL)
goto error;
ret_value = table->type_id;
error:
return ret_value;
}
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