1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
|
/****************************************************************************
* NCSA HDF *
* Scientific Data Technologies *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING f. *
* *
****************************************************************************/
#include "H5DS.h"
#include "H5LT.h"
#include <stdlib.h>
/* operator functions */
static herr_t verifiy_scale(hid_t dset, unsigned dim, hid_t scale, void *visitor_data);
static herr_t read_scale(hid_t dset, unsigned dim, hid_t scale, void *visitor_data);
/*-------------------------------------------------------------------------
* DS API test
*
* Functions tested:
*
* H5DSattach_scale
*
*-------------------------------------------------------------------------
*/
#define RANK 2
#define DIM_DATA 12
#define DIM1_SIZE 3
#define DIM2_SIZE 4
/*-------------------------------------------------------------------------
* the main program
*-------------------------------------------------------------------------
*/
int main(void)
{
hid_t fid; /* file ID */
hid_t did; /* dataset ID */
hid_t dsid; /* DS dataset ID */
int rank = RANK; /* rank of data dataset */
int rankds = 1; /* rank of DS dataset */
hsize_t dims[RANK] = {DIM1_SIZE,DIM2_SIZE}; /* size of data dataset */
int buf[DIM_DATA] = {1,2,3,4,5,6,7,8,9,10,11,12}; /* data of data dataset */
hsize_t s1_dim[1] = {DIM1_SIZE}; /* size of DS 1 dataset */
hsize_t s2_dim[1] = {DIM2_SIZE}; /* size of DS 2 dataset */
char sname[30]; /* scale name */
int s1_wbuf[DIM1_SIZE] = {10,20,30}; /* data of DS 1 dataset */
int s2_wbuf[DIM2_SIZE] = {100,200,300,400}; /* data of DS 2 dataset */
char s1_label[16]; /* read label for DS 1 */
char s2_label[16]; /* read label for DS 2 */
unsigned int dim; /* dataset dimension index */
int scale_idx; /* scale index */
/*-------------------------------------------------------------------------
* create a file for the test
*-------------------------------------------------------------------------
*/
/* create a file using default properties */
if ((fid=H5Fcreate("test_ds.h5",H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
goto out;
/*-------------------------------------------------------------------------
* create 6 datasets: two "data" datasets and 4 dimension scales
*-------------------------------------------------------------------------
*/
/* make a dataset */
if (H5LTmake_dataset_int(fid,"dset_a",rank,dims,buf)<0)
goto out;
/* make a dataset */
if (H5LTmake_dataset_int(fid,"dset_b",rank,dims,buf)<0)
goto out;
/* make a DS dataset for the first dimension */
if (H5LTmake_dataset_int(fid,"ds1",rankds,s1_dim,s1_wbuf)<0)
goto out;
/* make a DS dataset for the second dimension */
if (H5LTmake_dataset_int(fid,"ds2",rankds,s2_dim,s2_wbuf)<0)
goto out;
/* make a DS dataset with an alternate scale for the 2nd dimension */
if (H5LTmake_dataset_int(fid,"ds21",rankds,s2_dim,s2_wbuf)<0)
goto out;
/* make a DS dataset with an alternate scale for the 2nd dimension */
if (H5LTmake_dataset_int(fid,"ds22",rankds,s2_dim,s2_wbuf)<0)
goto out;
/*-------------------------------------------------------------------------
* test 1: attach scale
*-------------------------------------------------------------------------
*/
TESTING("attach scales");
/* get the dataset id for "dset_a" */
if ((did = H5Dopen(fid,"dset_a"))<0)
goto out;
/*-------------------------------------------------------------------------
* attach the "ds1" dimension scale to "dset_a"
*-------------------------------------------------------------------------
*/
/* get the DS dataset id */
if ((dsid = H5Dopen(fid,"ds1"))<0)
goto out;
/* attach the "ds1" dimension scale to "dset_a" as the 1st dimension */
if (H5DSattach_scale(did,dsid,0)<0)
goto out;
/* close DS id */
if (H5Dclose(dsid)<0)
goto out;
/*-------------------------------------------------------------------------
* attach the "ds2" dimension scale to "dset_a"
*-------------------------------------------------------------------------
*/
/* get the DS dataset id */
if ((dsid = H5Dopen(fid,"ds2"))<0)
goto out;
/* attach the "ds2" dimension scale to "dset_a" as the 2nd dimension */
if (H5DSattach_scale(did,dsid,1)<0)
goto out;
/* close DS id */
if (H5Dclose(dsid)<0)
goto out;
/*-------------------------------------------------------------------------
* attach the "ds21" dimension scale to "dset_a"
*-------------------------------------------------------------------------
*/
/* get the DS dataset id */
if ((dsid = H5Dopen(fid,"ds21"))<0)
goto out;
/* attach the "ds21" dimension scale to "dset_a" as the 2nd dimension */
if (H5DSattach_scale(did,dsid,1)<0)
goto out;
/* close DS id */
if (H5Dclose(dsid)<0)
goto out;
/*-------------------------------------------------------------------------
* attach the "ds22" dimension scale to "dset_a"
*-------------------------------------------------------------------------
*/
/* get the DS dataset id */
if ((dsid = H5Dopen(fid,"ds22"))<0)
goto out;
/* attach the "ds22" dimension scale to "dset_a" as the 2nd dimension */
if (H5DSattach_scale(did,dsid,1)<0)
goto out;
/* close DS id */
if (H5Dclose(dsid)<0)
goto out;
/* close dataset ID of "dset_a" */
if (H5Dclose(did)<0)
goto out;
/*-------------------------------------------------------------------------
* attach the "ds1" dimension scale to "dset_b"
*-------------------------------------------------------------------------
*/
/* get the dataset id for "dset_b" */
if ((did = H5Dopen(fid,"dset_b"))<0)
goto out;
/* get the DS dataset id */
if ((dsid = H5Dopen(fid,"ds1"))<0)
goto out;
/* attach the "ds1" dimension scale to "dset_b" as the 1st dimension */
if (H5DSattach_scale(did,dsid,0)<0)
goto out;
/* close DS id */
if (H5Dclose(dsid)<0)
goto out;
/* close dataset ID of "dset_b" */
if (H5Dclose(did)<0)
goto out;
/*-------------------------------------------------------------------------
* verify if the dimension scales are valid
*-------------------------------------------------------------------------
*/
if ((did = H5Dopen(fid,"ds1"))<0)
goto out;
if ((H5DSis_scale(did))<=0)
goto out;
if (H5Dclose(did))
goto out;
if ((did = H5Dopen(fid,"ds2"))<0)
goto out;
if ((H5DSis_scale(did))<=0)
goto out;
if (H5Dclose(did))
goto out;
if ((did = H5Dopen(fid,"ds21"))<0)
goto out;
if ((H5DSis_scale(did))<=0)
goto out;
if (H5Dclose(did))
goto out;
if ((did = H5Dopen(fid,"ds22"))<0)
goto out;
if ((H5DSis_scale(did))<=0)
goto out;
if (H5Dclose(did))
goto out;
PASSED();
/*-------------------------------------------------------------------------
* test 2: has scales
*-------------------------------------------------------------------------
*/
TESTING("has scales");
/*-------------------------------------------------------------------------
* verify that "dset_a" has dimension scales
*-------------------------------------------------------------------------
*/
/* get the dataset id for "dset_a" */
if ((did = H5Dopen(fid,"dset_a"))<0)
goto out;
/* verify that "dset_a" has dimension scales */
if ((H5DShas_scale(did))==0)
goto out;
/* close dataset ID of "dset_a" */
if (H5Dclose(did)<0)
goto out;
/*-------------------------------------------------------------------------
* verify if "dset_b" has dimension scales
*-------------------------------------------------------------------------
*/
/* get the dataset id for "dset_b" */
if ((did = H5Dopen(fid,"dset_b"))<0)
goto out;
/* verify that "dset_b" does not have a complete definition of dimension scales */
if ((H5DShas_scale(did))==1)
goto out;
/* close dataset ID of "dset_b" */
if (H5Dclose(did)<0)
goto out;
PASSED();
/*-------------------------------------------------------------------------
* test 3: detach scales
*-------------------------------------------------------------------------
*/
TESTING("detach scales ");
/*-------------------------------------------------------------------------
* create 3 datasets: one "data" dataset and 2 dimension scales
*-------------------------------------------------------------------------
*/
/* make a dataset */
if (H5LTmake_dataset_int(fid,"dset_c",rank,dims,buf)<0)
goto out;
/* make a DS dataset for the first dimension */
if (H5LTmake_dataset_int(fid,"ds3",rankds,s1_dim,s1_wbuf)<0)
goto out;
/* make a DS dataset for the second dimension */
if (H5LTmake_dataset_int(fid,"ds4",rankds,s2_dim,s2_wbuf)<0)
goto out;
/*-------------------------------------------------------------------------
* attach "ds3" and "ds4" to "dset_c"
*-------------------------------------------------------------------------
*/
if ((did = H5Dopen(fid,"dset_c"))<0)
goto out;
if ((dsid = H5Dopen(fid,"ds3"))<0)
goto out;
if (H5DSattach_scale(did,dsid,0)<0)
goto out;
if (H5Dclose(dsid)<0)
goto out;
if ((dsid = H5Dopen(fid,"ds4"))<0)
goto out;
if (H5DSattach_scale(did,dsid,1)<0)
goto out;
if (H5Dclose(dsid)<0)
goto out;
if (H5Dclose(did)<0)
goto out;
/*-------------------------------------------------------------------------
* verify if "dset_c" has dimension scales
*-------------------------------------------------------------------------
*/
if ((did = H5Dopen(fid,"dset_c"))<0)
goto out;
if ((H5DShas_scale(did))==0)
goto out;
if (H5Dclose(did)<0)
goto out;
/*-------------------------------------------------------------------------
* detach the "ds3" dimension scale to "dset_c"
*-------------------------------------------------------------------------
*/
/* get the dataset id for "dset_c" */
if ((did = H5Dopen(fid,"dset_c"))<0)
goto out;
/* get the DS dataset id */
if ((dsid = H5Dopen(fid,"ds3"))<0)
goto out;
/* detach the "ds3" dimension scale to "dset_c" at index 0 */
if (H5DSdetach_scale(did,dsid,0)<0)
goto out;
/* close DS id */
if (H5Dclose(dsid)<0)
goto out;
/* close dataset ID of "dset_c" */
if (H5Dclose(did)<0)
goto out;
/*-------------------------------------------------------------------------
* verify that "dset_c" has NOT dimension scales
*-------------------------------------------------------------------------
*/
if ((did = H5Dopen(fid,"dset_c"))<0)
goto out;
if ((H5DShas_scale(did))==1)
goto out;
if (H5Dclose(did)<0)
goto out;
PASSED();
/*-------------------------------------------------------------------------
* test 4: set/get label
*-------------------------------------------------------------------------
*/
TESTING("set/get label");
if ((did = H5Dopen(fid,"dset_a"))<0)
goto out;
if (H5DSset_label(did,"DY",0)<0)
goto out;
if (H5DSset_label(did,"DX",1)<0)
goto out;
if (H5DSget_label(did,s1_label,0)<0)
goto out;
if (H5DSget_label(did,s2_label,1)<0)
goto out;
if (strcmp("DY",s1_label)!=0)
goto out;
if (strcmp("DX",s2_label)!=0)
goto out;
if (H5Dclose(did))
goto out;
PASSED();
/*-------------------------------------------------------------------------
* test 5: set scale/get scale name
*-------------------------------------------------------------------------
*/
TESTING("set scale/get scale name");
/*-------------------------------------------------------------------------
* make a dataset named "ds5" and convert it to a DS dataset
*-------------------------------------------------------------------------
*/
if (H5LTmake_dataset_int(fid,"ds5",rankds,s1_dim,s1_wbuf)<0)
goto out;
if ((did = H5Dopen(fid,"ds5"))<0)
goto out;
if (H5DSset_scale(did,"scale 1")<0)
goto out;
/* verify that "ds5" is a dimension scale dataset */
if ((H5DSis_scale(did))==0)
goto out;
/*-------------------------------------------------------------------------
* get its scale name
*-------------------------------------------------------------------------
*/
if (H5DSget_scale_name(did,sname)<0)
goto out;
if (H5Dclose(did))
goto out;
if (strcmp("scale 1",sname)!=0)
goto out;
PASSED();
/*-------------------------------------------------------------------------
* test 6: test iterate scales with a function verifiy_scale
*-------------------------------------------------------------------------
*/
TESTING("iterate scales");
/* get the dataset id for "dset_a" */
if ((did = H5Dopen(fid,"dset_a"))<0)
goto out;
dim = 0;
/* iterate trough the 1st dimension of "dset_a" and verify that its DS is valid */
if (H5DSiterate_scales(did,dim,NULL,verifiy_scale,NULL)<0)
goto out;
/* iterate trough the 2nd dimension of "dset_a" and verify that its DS is valid
start at DS index 2 */
dim = 1;
scale_idx = 2;
if (H5DSiterate_scales(did,dim,&scale_idx,verifiy_scale,NULL)<0)
goto out;
/* close dataset ID of "dset_a" */
if (H5Dclose(did)<0)
goto out;
PASSED();
/*-------------------------------------------------------------------------
* test 6: test iterate scales with a function read_scale
*-------------------------------------------------------------------------
*/
TESTING("read scale values with iterate scales");
/* get the dataset id for "dset_a" */
if ((did = H5Dopen(fid,"dset_a"))<0)
goto out;
dim = 0;
/* iterate trough the 1st dimension of "dset_a" and read the DS */
if (H5DSiterate_scales(did,dim,NULL,read_scale,s1_wbuf)<0)
goto out;
/* iterate trough the 2nd dimension of "dset_a" and read the DS
start at DS index 2 */
dim = 1;
scale_idx = 2;
if (H5DSiterate_scales(did,dim,&scale_idx,read_scale,s2_wbuf)<0)
goto out;
/* close dataset ID of "dset_a" */
if (H5Dclose(did)<0)
goto out;
PASSED();
/*-------------------------------------------------------------------------
* end
*-------------------------------------------------------------------------
*/
/* close */
H5Fclose(fid);
return 0;
/* error zone, gracefully close */
out:
H5E_BEGIN_TRY {
H5Dclose(did);
H5Fclose(fid);
} H5E_END_TRY;
H5_FAILED();
return 1;
}
/*-------------------------------------------------------------------------
* Function: verifiy_scale
*
* Purpose: example operator function used by H5DSiterate_scales, used
* to veify that SCALE_ID refers to a valid DS dataset
*
* Return:
* The return values from an operator are:
* Zero causes the iterator to continue, returning zero when all group members have been processed.
* Positive causes the iterator to immediately return that positive value, indicating
* short-circuit success. The iterator can be restarted at the next group member.
* Negative causes the iterator to immediately return that value, indicating failure.
* The iterator can be restarted at the next group member.
*
*-------------------------------------------------------------------------
*/
static herr_t verifiy_scale(hid_t dset, unsigned dim, hid_t scale_id, void *visitor_data)
{
/* define a default zero value for return. This will cause the iterator to continue */
int ret = 0;
/* unused */
dset=dset;
dim=dim;
visitor_data=visitor_data;
/* define a positive value for return value. This will cause the iterator to
immediately return that positive value, indicating short-circuit success
*/
/* the parameter DS dataset must be a valid DS dataset */
if ((H5DSis_scale(scale_id))==1)
{
ret = 1;
}
return ret;
}
/*-------------------------------------------------------------------------
* Function: read_scale
*
* Purpose: example operator function used by H5DSiterate_scales, used
* to read data from DS dataset. compare read and write buffers
*
* Return:
* The return values from an operator are:
* Zero causes the iterator to continue, returning zero when all group members have been processed.
* Positive causes the iterator to immediately return that positive value, indicating
* short-circuit success. The iterator can be restarted at the next group member.
* Negative causes the iterator to immediately return that value, indicating failure.
* The iterator can be restarted at the next group member
*
*
*-------------------------------------------------------------------------
*/
static herr_t read_scale(hid_t dset, unsigned dim, hid_t scale_id, void *visitor_data)
{
int ret = 0; /* define a default zero value for return. This will cause the iterator to continue */
hid_t sid; /* space ID */
hid_t tid; /* file type ID */
hid_t mtid; /* memory type ID */
hssize_t nelmts; /* number of data elements */
char *buf=NULL; /* data buffer */
size_t size;
int i;
char *data=visitor_data;
/* unused */
dset=dset;
dim=dim;
/* get space */
if ((sid = H5Dget_space(scale_id))<0)
goto out;
/* get type */
if ((tid = H5Dget_type(scale_id))<0)
goto out;
/* get size of the DS array */
if ((nelmts = H5Sget_simple_extent_npoints(sid))<0)
goto out;
/* get type */
if ((mtid=H5Tget_native_type(tid,H5T_DIR_DEFAULT))<0)
goto out;
/* get type size */
if ((size=H5Tget_size(mtid))==0)
goto out;
if (nelmts)
{
buf=(char *) malloc((unsigned)(nelmts*size));
if ( buf==NULL)
goto out;
if (H5Dread(scale_id,mtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
goto out;
for(i=0; i<nelmts; i++)
{
if (buf[i] != data[i])
{
printf("read and write buffers differ\n");
goto out;
}
}
} /* if */
if (H5Sclose(sid)<0)
goto out;
if (H5Tclose(tid)<0)
goto out;
if (H5Tclose(mtid)<0)
goto out;
if (buf)
free(buf);
return ret;
/* error zone, gracefully close */
out:
H5E_BEGIN_TRY {
H5Sclose(sid);
H5Tclose(tid);
H5Tclose(mtid);
if (buf)
free(buf);
} H5E_END_TRY;
return FAIL;
}
|