1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <jni.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "hdf5.h"
#include "h5util.h"
#include "h5gImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Gclose
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Gclose
(JNIEnv *env, jclass clss, jlong group_id)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Gclose((hid_t)group_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Gclose */
/*
* Create a java object of hdf.h5.structs.H5G_info_t
* public class H5G_info_t {
* public H5G_STORAGE_TYPE storage_type; // Type of storage for links in group
* public long nlinks; // Number of links in group
* public long max_corder; // Current max. creation order value for group
* public int mounted; // Whether group has a file mounted on it
* }
*
*/
jobject
create_H5G_info_t
(JNIEnv *env, H5G_info_t group_info)
{
jfieldID fid_storage_type, fid_nlinks, fid_max_corder, fid_mounted;
jboolean jmounted;
jclass cls;
jint storage_type;
jobject obj = NULL;
if (NULL == (cls = ENVPTR->FindClass(ENVONLY, "hdf/hdf5lib/structs/H5G_info_t")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (obj = ENVPTR->AllocObject(ENVONLY, cls)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (fid_storage_type = ENVPTR->GetFieldID(ENVONLY, cls, "storage_type", "I")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (fid_nlinks = ENVPTR->GetFieldID(ENVONLY, cls, "nlinks", "J")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (fid_max_corder = ENVPTR->GetFieldID(ENVONLY, cls, "max_corder", "J")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (fid_mounted = ENVPTR->GetFieldID(ENVONLY, cls, "mounted", "Z")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
jmounted = (group_info.mounted == 0) ? JNI_FALSE : JNI_TRUE;
storage_type = (jint)group_info.storage_type;
ENVPTR->SetIntField(ENVONLY, obj, fid_storage_type, (jint)storage_type);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetLongField(ENVONLY, obj, fid_nlinks, (jlong)group_info.nlinks);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetLongField(ENVONLY, obj, fid_max_corder, (jlong)group_info.max_corder);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetBooleanField(ENVONLY, obj, fid_mounted, jmounted);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
return obj;
} /* end create_H5G_info_t */
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Gcreate2
* Signature: (JLjava/lang/String;JJJ)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gcreate2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
{
const char *grpName = NULL;
hid_t group_id = H5I_INVALID_HID;
UNUSED(clss);
if (NULL == name)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gcreate2: group name is NULL");
PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gcreate2: group name not pinned");
if ((group_id = H5Gcreate2((hid_t)loc_id, grpName, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gcreate2 */
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Gcreate_anon
* Signature: (JJJ)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gcreate_1anon
(JNIEnv *env, jclass clss, jlong loc_id, jlong gcpl_id, jlong gapl_id)
{
hid_t group_id = H5I_INVALID_HID;
UNUSED(clss);
if ((group_id = H5Gcreate_anon((hid_t)loc_id, (hid_t)gcpl_id, (hid_t)gapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gcreate_1anon */
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Gopen2
* Signature: (JLjava/lang/String;J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gopen2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id)
{
const char *grpName = NULL;
hid_t group_id = H5I_INVALID_HID;
UNUSED(clss);
if (NULL == name)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gopen2: group name is NULL");
PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gopen2: group name not pinned");
if ((group_id = H5Gopen2((hid_t)loc_id, grpName, (hid_t)access_plist_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gopen2 */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Gget_create_plist
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1create_1plist
(JNIEnv *env, jclass clss, jlong loc_id)
{
hid_t plist_id = H5I_INVALID_HID;
UNUSED(clss);
if ((plist_id = H5Gget_create_plist((hid_t)loc_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)plist_id;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1create_1plist */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Gget_info
* Signature: (J)Lhdf/hdf5lib/structs/H5G_info_t;
*/
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info
(JNIEnv *env, jclass clss, jlong loc_id)
{
H5G_info_t group_info;
jobject obj = NULL;
UNUSED(clss);
if (H5Gget_info((hid_t)loc_id, &group_info) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (obj = create_H5G_info_t(env, group_info)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info: unable to create H5G_info_t object");
done:
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Gget_info_by_name
* Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5G_info_t;
*/
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong lapl_id)
{
H5G_info_t group_info;
const char *grpName = NULL;
jobject obj = NULL;
herr_t ret_val = FAIL;
UNUSED(clss);
if (NULL == name)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_info_by_name: group name is NULL");
PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_name: group name not pinned");
if ((ret_val = H5Gget_info_by_name((hid_t)loc_id, grpName, &group_info, (hid_t)lapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (obj = create_H5G_info_t(env, group_info))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info_by_name: unable to create H5G_info_t object");
}
done:
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Gget_info_by_idx
* Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5G_info_t;
*/
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_type,
jint order, jlong n, jlong lapl_id)
{
H5_iter_order_t corder = (H5_iter_order_t)order;
H5_index_t cindex_type = (H5_index_t)index_type;
H5G_info_t group_info;
const char *grpName = NULL;
jobject obj = NULL;
herr_t ret_val = FAIL;
UNUSED(clss);
if (NULL == name)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_info_by_idx: group name is NULL");
PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_idx: group name not pinned");
if ((ret_val = H5Gget_info_by_idx((hid_t)loc_id, grpName, cindex_type,
corder, (hsize_t)n, &group_info, (hid_t)lapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (obj = create_H5G_info_t(env, group_info))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info_by_idx: unable to create H5G_info_t object");
}
done:
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Gflush
* Signature: (J)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Gflush
(JNIEnv *env, jclass clss, jlong loc_id)
{
UNUSED(clss);
if (H5Gflush((hid_t)loc_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Gflush */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Grefresh
* Signature: (J)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Grefresh
(JNIEnv *env, jclass clss, jlong loc_id)
{
UNUSED(clss);
if (H5Grefresh((hid_t)loc_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Grefresh */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
|