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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pFCPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_userblock
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1userblock(JNIEnv *env, jclass clss, jlong plist, jlong size)
{
long sz = (long)size;
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_userblock((hid_t)plist, (hsize_t)sz)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1userblock */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_userblock
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1userblock(JNIEnv *env, jclass clss, jlong plist, jlongArray size)
{
jboolean isCopy;
hsize_t s;
jlong *theArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_userblock: size is NULL");
PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_userblock: size not pinned");
if ((status = H5Pget_userblock((hid_t)plist, &s)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
theArray[0] = (jlong)s;
done:
if (theArray)
UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1userblock */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_sizes
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1sizes(JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_sizes((hid_t)plist, (size_t)sizeof_addr, (size_t)sizeof_size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1sizes */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_sizes
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1sizes(JNIEnv *env, jclass clss, jlong plist, jlongArray size)
{
jboolean isCopy;
jlong *theArray = NULL;
jsize arrLen;
size_t ss;
size_t sa;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size is NULL");
if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size array length < 0");
}
if (arrLen < 2)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size input array < 2 elements");
PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sizes: size not pinned");
if ((status = H5Pget_sizes((hid_t)plist, &sa, &ss)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
theArray[0] = (jlong)sa;
theArray[1] = (jlong)ss;
done:
if (theArray)
UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1sizes */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_sym_k
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1sym_1k(JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_sym_k((hid_t)plist, (unsigned)ik, (unsigned)lk)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1sym_1k */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_sym_k
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1sym_1k(JNIEnv *env, jclass clss, jlong plist, jintArray size)
{
jboolean isCopy;
jsize arrLen;
jint *theArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size is NULL");
if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size array length < 0");
}
if (arrLen < 2)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size < 2 elements");
PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sym_k: size not pinned");
if ((status = H5Pget_sym_k((hid_t)plist, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1sym_1k */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_istore_k
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1istore_1k(JNIEnv *env, jclass clss, jlong plist, jint ik)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_istore_k((hid_t)plist, (unsigned)ik)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1istore_1k */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_istore_k
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1istore_1k(JNIEnv *env, jclass clss, jlong plist, jintArray ik)
{
jboolean isCopy;
jint *theArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == ik)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_store_k: ik is NULL");
PIN_INT_ARRAY(ENVONLY, ik, theArray, &isCopy, "H5Pget_store_k: size not pinned");
if ((status = H5Pget_istore_k((hid_t)plist, (unsigned *)&(theArray[0]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, ik, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1istore_1k */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_file_space_page_size
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size(JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size)
{
UNUSED(clss);
if (H5Pset_file_space_page_size((hid_t)fcpl_id, (hsize_t)fsp_size) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_page_size
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size(JNIEnv *env, jclass clss, jlong fcpl_id)
{
hsize_t fsp_size = 0;
UNUSED(clss);
if (H5Pget_file_space_page_size((hid_t)fcpl_id, &fsp_size) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)fsp_size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_file_space_strategy
* Signature: (JIZJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy(JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy,
jboolean persist, jlong threshold)
{
UNUSED(clss);
if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist,
(hsize_t)threshold) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_file_space_strategy */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy
* Signature: (J[Z[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy(JNIEnv *env, jclass clss, jlong fcpl_id,
jbooleanArray persist, jlongArray threshold)
{
H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */
jboolean isCopy;
jboolean *persistArray = NULL;
jlong *thresholdArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (persist)
PIN_BOOL_ARRAY(ENVONLY, persist, persistArray, &isCopy, "H5Pget_file_space: persist not pinned");
if (threshold)
PIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, &isCopy,
"H5Pget_file_space: threshold not pinned");
if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t *)persistArray,
(hsize_t *)thresholdArray)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (thresholdArray)
UNPIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, (status < 0) ? JNI_ABORT : 0);
if (persistArray)
UNPIN_BOOL_ARRAY(ENVONLY, persist, persistArray, (status < 0) ? JNI_ABORT : 0);
return (jint)thestrategy;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy_persist
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist(JNIEnv *env, jclass clss, jlong fcpl_id)
{
hbool_t persist = FALSE;
herr_t status = FAIL;
UNUSED(clss);
if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, &persist, NULL)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jboolean)persist;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy_threshold
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold(JNIEnv *env, jclass clss, jlong fcpl_id)
{
hsize_t threshold = 0;
herr_t status = FAIL;
UNUSED(clss);
if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, NULL, &threshold)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)threshold;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1threshold */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_nindexes
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes(JNIEnv *env, jclass clss, jlong plist_id, jint nindexes)
{
herr_t retVal = FAIL;
UNUSED(clss);
if (nindexes > H5O_SHMESG_MAX_NINDEXES)
H5_BAD_ARGUMENT_ERROR(
ENVONLY,
"H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES");
if ((retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_nindexes
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes(JNIEnv *env, jclass clss, jlong fcpl_id)
{
unsigned nindexes;
UNUSED(clss);
if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)nindexes;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_index
* Signature: (JIII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num,
jint mesg_type_flags, jint min_mesg_size)
{
unsigned nindexes; /* Number of SOHM indexes */
herr_t retVal = FAIL;
UNUSED(clss);
/* Check arguments */
if ((unsigned)mesg_type_flags > H5O_SHMESG_ALL_FLAG)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags");
/* Read the current number of indexes */
if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Range check */
if ((unsigned)index_num >= nindexes)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: index_num is too large; no such index");
if ((retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned)mesg_type_flags,
(unsigned)min_mesg_size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_index
* Signature: (JI[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num,
jintArray mesg_info)
{
jboolean isCopy;
unsigned nindexes; /* Number of SOHM indexes */
jint *theArray = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
if (NULL == mesg_info)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: mesg_info is NULL");
/* Read the current number of indexes */
if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Range check */
if ((unsigned)index_num >= nindexes)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: index_num is too large; no such index");
PIN_INT_ARRAY(ENVONLY, mesg_info, theArray, &isCopy, "H5Pget_shared_mesg_index: input not pinned");
if ((retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned *)&(theArray[0]),
(unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, mesg_info, theArray, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_phase_change
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change(JNIEnv *env, jclass clss, jlong fcpl_id,
jint max_list, jint min_btree)
{
herr_t retVal = FAIL;
UNUSED(clss);
/* Check that values are sensible. The min_btree value must be no greater
* than the max list plus one.
*
* Range check to make certain they will fit into encoded form.
*/
if (max_list + 1 < min_btree)
H5_BAD_ARGUMENT_ERROR(
ENVONLY,
"H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value");
if (max_list > H5O_SHMESG_MAX_LIST_SIZE)
H5_BAD_ARGUMENT_ERROR(
ENVONLY,
"H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE");
if (min_btree > H5O_SHMESG_MAX_LIST_SIZE)
H5_BAD_ARGUMENT_ERROR(
ENVONLY,
"H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE");
if ((retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree)) <
0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_phase_change
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change(JNIEnv *env, jclass clss, jlong fcpl_id,
jintArray size)
{
jboolean isCopy;
jint *theArray = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
if (NULL == size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_phase_change: size is NULL");
PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_shared_mesg_phase_change: input not pinned");
if ((retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned *)&(theArray[0]),
(unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, size, theArray, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
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