path: root/java/src/jni/h5rImp.c

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://www.hdfgroup.org/licenses.               *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/*
 *  For details of the HDF libraries, see the HDF Documentation at:
 *    http://hdfgroup.org/HDF5/doc/
 *
 */
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */

#include "hdf5.h"
#include <jni.h>
#include <stdlib.h>
#include "h5jni.h"
#include "h5rImp.h"

/* H5R: HDF5 1.12 Reference API Functions */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rcreate_object
 * Signature: (JLjava/lang/String;)[B
 */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_H5_H5Rcreate_1object(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong aid)
{
    const char *refName = NULL;
    jbyteArray  ref     = NULL;
    jbyte      *refBuf  = NULL;
    herr_t      status  = FAIL;

    UNUSED(clss);

    if (NULL == name)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate_object: name is NULL");

    PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_object: reference name not pinned");

    if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_object: failed to allocate reference buffer");

    H5R_ref_t loc_ref;
    if ((status = H5Rcreate_object((hid_t)loc_id, refName, (hid_t)aid, &loc_ref)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);

    if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

    ENVPTR->SetByteArrayRegion(ENVONLY, ref, 0, (jsize)H5R_REF_BUF_SIZE, (jbyte *)refBuf);
    CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (refName)
        UNPIN_JAVA_STRING(ENVONLY, name, refName);
    if (refBuf)
        HDfree(refBuf);

    return ref;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1object */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rcreate_region
 * Signature: (JLjava/lang/String;J)[B
 */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_H5_H5Rcreate_1region(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong space_id,
                                      jlong aid)
{
    const char *refName = NULL;
    jbyteArray  ref     = NULL;
    jbyte      *refBuf  = NULL;
    herr_t      status  = FAIL;

    UNUSED(clss);

    if (NULL == name)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate_region: name is NULL");

    PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_region: reference name not pinned");

    if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_region: failed to allocate reference buffer");

    H5R_ref_t loc_ref;
    if ((status = H5Rcreate_region((hid_t)loc_id, refName, space_id, (hid_t)aid, &loc_ref)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);

    if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

    ENVPTR->SetByteArrayRegion(ENVONLY, ref, 0, (jsize)H5R_REF_BUF_SIZE, (jbyte *)refBuf);
    CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (refName)
        UNPIN_JAVA_STRING(ENVONLY, name, refName);
    if (refBuf)
        HDfree(refBuf);

    return ref;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1region */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rcreate_attr
 * Signature: (JLjava/lang/String;Ljava/lang/String;)[B
 */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_H5_H5Rcreate_1attr(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jstring attr_name,
                                    jlong aid)
{
    const char *refName  = NULL;
    const char *attrName = NULL;
    jbyteArray  ref      = NULL;
    jbyte      *refBuf   = NULL;
    herr_t      status   = FAIL;

    UNUSED(clss);

    if (NULL == name)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate_attr: name is NULL");
    if (NULL == attr_name)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate_attr: attribute name is NULL");

    PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Rcreate_attr: attribute name not pinned");

    PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_attr: reference name not pinned");

    if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate reference buffer");

    H5R_ref_t loc_ref;
    if ((status = H5Rcreate_attr((hid_t)loc_id, refName, attrName, (hid_t)aid, &loc_ref)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(refBuf, &loc_ref, H5R_REF_BUF_SIZE);

    if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

    ENVPTR->SetByteArrayRegion(ENVONLY, ref, 0, (jsize)H5R_REF_BUF_SIZE, (jbyte *)refBuf);
    CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (attrName)
        UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
    if (refName)
        UNPIN_JAVA_STRING(ENVONLY, name, refName);
    if (refBuf)
        HDfree(refBuf);

    return ref;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1attr */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rdestroy
 * Signature: ([B)V
 */
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Rdestroy(JNIEnv *env, jclass clss, jbyteArray ref)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jsize    refBufLen;
    herr_t   status = FAIL;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rdestroy: reference is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdestroy: reference array length < 0");
    }

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rdestroy: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    if ((status = H5Rdestroy(&loc_ref)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (status < 0) ? JNI_ABORT : 0);
} /* end Java_hdf_hdf5lib_H5_H5Rdestroy */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rget_type
 * Signature: ([B)I
 */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1type(JNIEnv *env, jclass clss, jbyteArray ref)
{
    jboolean   isCopy;
    jbyte     *refBuf = NULL;
    jsize      refBufLen;
    H5R_type_t ref_type = -1;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_type: reference is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_type: reference array length < 0");
    }

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_type: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    if ((ref_type = H5Rget_type(&loc_ref)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (ref_type < 0) ? JNI_ABORT : 0);

    return (jint)ref_type;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1type */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Requal
 * Signature: ([B[B)Z
 */
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Requal(JNIEnv *env, jclass clss, jbyteArray ref1, jbyteArray ref2)
{
    jboolean isCopy;
    jbyte   *refBuf1 = NULL;
    jbyte   *refBuf2 = NULL;
    jsize    refBufLen;
    htri_t   bval   = JNI_FALSE;
    herr_t   status = FAIL;

    UNUSED(clss);

    if (NULL == ref1)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Requal: reference1 is NULL");

    if (NULL == ref2)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Requal: reference2 is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref1)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Requal: reference1 array length < 0");
    }

    PIN_BYTE_ARRAY(ENVONLY, ref1, refBuf1, &isCopy, "H5Requal: reference1 buffer not pinned");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref2)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Requal: reference2 array length < 0");
    }

    PIN_BYTE_ARRAY(ENVONLY, ref2, refBuf2, &isCopy, "H5Requal: reference2 buffer not pinned");

    H5R_ref_t loc_ref1, loc_ref2;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref1, refBuf1, H5R_REF_BUF_SIZE);
    HDmemcpy(&loc_ref2, refBuf2, H5R_REF_BUF_SIZE);

    if ((bval = H5Requal(&loc_ref1, &loc_ref2)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);
    status = bval;

    bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;

done:
    if (refBuf2)
        UNPIN_BYTE_ARRAY(ENVONLY, ref2, refBuf2, (status < 0) ? JNI_ABORT : 0);
    if (refBuf1)
        UNPIN_BYTE_ARRAY(ENVONLY, ref1, refBuf1, (status < 0) ? JNI_ABORT : 0);

    return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Requal */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rcopy
 * Signature: ([B)[B
 */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_H5_H5Rcopy(JNIEnv *env, jclass clss, jbyteArray src_ref)
{
    jboolean   isCopy;
    jbyte     *src_refBuf = NULL;
    jsize      refBufLen;
    jbyteArray dst_ref    = NULL;
    jbyte     *dst_refBuf = NULL;
    herr_t     status     = FAIL;

    UNUSED(clss);

    if (NULL == src_ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcopy: src reference is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, src_ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcopy: src reference array length < 0");
    }

    PIN_BYTE_ARRAY(ENVONLY, src_ref, src_refBuf, &isCopy, "H5Rcopy: src reference buffer not pinned");

    if (NULL == (dst_refBuf = HDcalloc(1, H5R_REF_BUF_SIZE)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate dst reference buffer");

    H5R_ref_t loc_src_ref, loc_dst_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_src_ref, src_refBuf, H5R_REF_BUF_SIZE);
    HDmemcpy(&loc_dst_ref, dst_refBuf, H5R_REF_BUF_SIZE);

    if ((status = H5Rcopy(&loc_src_ref, &loc_dst_ref)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    HDmemcpy(dst_refBuf, &loc_dst_ref, H5R_REF_BUF_SIZE);

    if (NULL == (dst_ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

    ENVPTR->SetByteArrayRegion(ENVONLY, dst_ref, 0, (jsize)H5R_REF_BUF_SIZE, (jbyte *)dst_refBuf);
    CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (src_refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, src_ref, src_refBuf, (status < 0) ? JNI_ABORT : 0);
    if (dst_refBuf)
        HDfree(dst_refBuf);

    return dst_ref;
} /* end Java_hdf_hdf5lib_H5_H5Rcopy */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Ropen_object
 * Signature: ([BJJ)J
 */
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Ropen_1object(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id, jlong oapl_id)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jsize    refBufLen;
    hid_t    retVal = H5I_INVALID_HID;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ropen_object: reference is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ropen_object: reference array length < 0");
    }

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Ropen_object: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    if ((retVal = H5Ropen_object(&loc_ref, (hid_t)rapl_id, (hid_t)oapl_id)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);

    return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Ropen_1object */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Ropen_region
 * Signature: ([BJJ)J
 */
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Ropen_1region(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id, jlong oapl_id)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jsize    refBufLen;
    hid_t    retVal = H5I_INVALID_HID;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ropen_region: reference is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ropen_region: reference array length < 0");
    }

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Ropen_region: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    if ((retVal = H5Ropen_region(&loc_ref, (hid_t)rapl_id, (hid_t)oapl_id)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);

    return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Ropen_1region */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Ropen_attr
 * Signature: ([BJJ)J
 */
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Ropen_1attr(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id, jlong aapl_id)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jsize    refBufLen;
    hid_t    retVal = H5I_INVALID_HID;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ropen_attr: reference is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ropen_attr: reference array length < 0");
    }

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Ropen_attr: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    if ((retVal = H5Ropen_attr(&loc_ref, (hid_t)rapl_id, (hid_t)aapl_id)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);

    return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Ropen_1attr */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rget_obj_type3
 * Signature: ([BJ)I
 */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type3(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id)
{
    H5O_type_t object_info = -1;
    jboolean   isCopy;
    jbyte     *refBuf = NULL;
    int        retVal = -1;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type3: reference buffer is NULL");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type3: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    if ((retVal = H5Rget_obj_type3(&loc_ref, (hid_t)rapl_id, &object_info)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    if (retVal >= 0)
        retVal = object_info;

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);

    return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type3 */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rget_file_name
 * Signature: ([B)Ljava/lang/String;
 */
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1file_1name(JNIEnv *env, jclass clss, jbyteArray ref)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jstring  str    = NULL;
    ssize_t  buf_size;
    ssize_t  check_size = -1;
    char    *namePtr    = NULL;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_file_name: reference buffer is NULL");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_file_name: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    /* Get the length of the name */
    if ((buf_size = H5Rget_file_name(&loc_ref, NULL, 0)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_file_name: malloc failed");

    if ((check_size = H5Rget_file_name(&loc_ref, namePtr, (size_t)buf_size + 1)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);
    namePtr[buf_size] = '\0';

    if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (namePtr)
        HDfree(namePtr);
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0);

    return str;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1file_1name */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rget_obj_name
 * Signature: ([BJ)Ljava/lang/String;
 */
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1name(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jstring  str    = NULL;
    ssize_t  buf_size;
    ssize_t  check_size = -1;
    char    *namePtr    = NULL;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_name: reference buffer is NULL");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_name: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    /* Get the length of the name */
    if ((buf_size = H5Rget_obj_name(&loc_ref, (hid_t)rapl_id, NULL, 0)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_obj_name: malloc failed");

    if ((check_size = H5Rget_obj_name(&loc_ref, (hid_t)rapl_id, namePtr, (size_t)buf_size + 1)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);
    namePtr[buf_size] = '\0';

    if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (namePtr)
        HDfree(namePtr);
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0);

    return str;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1name */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rget_attr_name
 * Signature: ([B)Ljava/lang/String;
 */
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1attr_1name(JNIEnv *env, jclass clss, jbyteArray ref)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jstring  str    = NULL;
    ssize_t  buf_size;
    ssize_t  check_size = -1;
    char    *namePtr    = NULL;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_attr_name: reference buffer is NULL");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_attr_name: reference buffer not pinned");

    H5R_ref_t loc_ref;

    HDcompile_assert(H5R_REF_BUF_SIZE <= sizeof(H5R_ref_t));
    HDmemcpy(&loc_ref, refBuf, H5R_REF_BUF_SIZE);

    /* Get the length of the name */
    if ((buf_size = H5Rget_attr_name(&loc_ref, NULL, 0)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_attr_name: malloc failed");

    if ((check_size = H5Rget_attr_name(&loc_ref, namePtr, (size_t)buf_size + 1)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);
    namePtr[buf_size] = '\0';

    if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (namePtr)
        HDfree(namePtr);
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0);

    return str;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1attr_1name */

/* H5R: HDF5 1.8 Reference API Functions */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rcreate
 * Signature: ([BJLjava/lang/String;IJ)I
 */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rcreate(JNIEnv *env, jclass clss, jbyteArray ref, jlong loc_id, jstring name,
                              jint ref_type, jlong space_id)
{
    const char *refName = NULL;
    jboolean    isCopy;
    jbyte      *refBuf = NULL;
    jsize       refBufLen;
    herr_t      status = FAIL;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference is NULL");
    if (NULL == name)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: name is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: ref array length < 0");
    }

    if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference input array length != H5R_OBJ_REF_BUF_SIZE");
    else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
        H5_BAD_ARGUMENT_ERROR(ENVONLY,
                              "H5Rcreate: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE");
    else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: unknown reference type");

    PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate: reference name not pinned");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rcreate: reference buffer not pinned");

    if ((status = H5Rcreate(refBuf, (hid_t)loc_id, refName, (H5R_type_t)ref_type, (hid_t)space_id)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (status < 0) ? JNI_ABORT : 0);
    if (refName)
        UNPIN_JAVA_STRING(ENVONLY, name, refName);

    return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    _H5Rdereference
 * Signature: (JJI[B)J
 */
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rdereference(JNIEnv *env, jclass clss, jlong dataset, jlong access_list,
                                     jint ref_type, jbyteArray ref)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jsize    refBufLen;
    hid_t    retVal = H5I_INVALID_HID;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference buffer is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: ref array length < 0");
    }

    if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
        H5_BAD_ARGUMENT_ERROR(ENVONLY,
                              "H5Rdereference: reference input array length != H5R_OBJ_REF_BUF_SIZE");
    else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
        H5_BAD_ARGUMENT_ERROR(
            ENVONLY, "H5Rdereference: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE");
    else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: unknown reference type");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rderefernce: reference buffer not pinned");

    if ((retVal = H5Rdereference2((hid_t)dataset, (hid_t)access_list, (H5R_type_t)ref_type, refBuf)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);

    return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rdereference */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rget_region
 * Signature: (JI[B)J
 */
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rget_1region(JNIEnv *env, jclass clss, jlong dataset, jint ref_type, jbyteArray ref)
{
    jboolean isCopy;
    jbyte   *refBuf = NULL;
    jsize    refBufLen;
    hid_t    retVal = H5I_INVALID_HID;

    UNUSED(clss);

    if (H5R_DATASET_REGION != ref_type)
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: bad reference type");
    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: reference buffer is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: ref array length < 0");
    }

    if (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)
        H5_BAD_ARGUMENT_ERROR(
            ENVONLY, "H5Rget_region: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_region: reference buffer not pinned");

    if ((retVal = H5Rget_region((hid_t)dataset, (H5R_type_t)ref_type, refBuf)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);

    return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rget_1region */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5G_obj_t H5Rget_obj_type
 * Signature: (JI[B)I
 */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref)
{
    H5O_type_t object_info;
    jboolean   isCopy;
    jbyte     *refBuf = NULL;
    int        retVal = -1;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference buffer is NULL");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type: reference buffer not pinned");

    if ((retVal = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, &object_info)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    if (retVal >= 0)
        retVal = object_info;

done:
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);

    return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    int H5Rget_obj_type2
 * Signature: (JI[B[I)I
 */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref,
                                       jintArray ref_obj)
{
    jboolean isCopy, isCopy2;
    jbyte   *refBuf   = NULL;
    jint    *ref_objP = NULL;
    jint     status   = -1;
    int      retVal   = -1;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference buffer is NULL");
    if (NULL == ref_obj)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference object is NULL");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type: reference buffer not pinned");

    PIN_INT_ARRAY(ENVONLY, ref_obj, ref_objP, &isCopy2, "H5Rget_obj_type: reference object array not pinned");

    if ((status = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, (H5O_type_t *)ref_objP)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    retVal = ref_objP[0];

done:
    if (ref_objP)
        UNPIN_INT_ARRAY(ENVONLY, ref_obj, ref_objP, (status < 0) ? JNI_ABORT : 0);
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);

    return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2 */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rget_name
 * Signature: (JI[B[Ljava/lang/String;J)J
 */
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1name(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref,
                                 jobjectArray name, jlong size)
{
    jboolean isCopy;
    jstring  str;
    jsize    refBufLen;
    jbyte   *refBuf  = NULL;
    char    *aName   = NULL;
    jlong    ret_val = -1;

    UNUSED(clss);

    if (size <= 0)
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: size <= 0");
    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference buffer is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: ref array length < 0");
    }

    if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE");
    else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
        H5_BAD_ARGUMENT_ERROR(
            ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE");
    else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: unknown reference type");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_name: reference buffer not pinned");

    if (NULL == (aName = HDmalloc(sizeof(char) * (size_t)size + 1)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer");

    if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName, (size_t)size + 1)) <
        0)
        H5_LIBRARY_ERROR(ENVONLY);
    aName[(size_t)size] = '\0';

    if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

    ENVPTR->SetObjectArrayElement(ENVONLY, name, (jsize)0, str);
    CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (aName)
        HDfree(aName);
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);

    return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1name */

/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Rget_name_string
 * Signature: (JI[B)Ljava/lang/String;
 */
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1name_1string(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type,
                                         jbyteArray ref)
{
    jboolean isCopy;
    jstring  str = NULL;
    jsize    refBufLen;
    jbyte   *refBuf   = NULL;
    char    *aName    = NULL;
    ssize_t  buf_size = -1;
    jlong    ret_val  = -1;

    UNUSED(clss);

    if (NULL == ref)
        H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference buffer is NULL");

    if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: ref array length < 0");
    }

    if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE");
    else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
        H5_BAD_ARGUMENT_ERROR(
            ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE");
    else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
        H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: unknown reference type");

    PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_name: reference buffer not pinned");

    /* Get the length of the name */
    if ((buf_size = H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, NULL, 0)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);

    if (NULL == (aName = HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
        H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer");

    if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName,
                                      (size_t)buf_size + 1)) < 0)
        H5_LIBRARY_ERROR(ENVONLY);
    aName[(size_t)buf_size] = '\0';

    if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
        CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);

done:
    if (aName)
        HDfree(aName);
    if (refBuf)
        UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);

    return str;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1name_1string */

#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */