1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Fbasic {
@Rule
public TestName testname = new TestName();
private static final String H5_FILE = "testFb.h5";
private static final String TXT_FILE = "testFb.txt";
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename)
{
File file = new File(filename);
if (file.exists()) {
try {
file.delete();
}
catch (SecurityException e) {
}
}
}
@Before
public void createH5file() throws HDF5LibraryException, NullPointerException
{
assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
public void deleteH5file() throws HDF5LibraryException
{
if (H5fid > 0) {
try {
H5.H5Fclose(H5fid);
}
catch (Exception ex) {
}
}
_deleteFile(H5_FILE);
System.out.println();
}
@Test
public void testH5Fcreate()
{
assertTrue(H5fid > 0);
}
@Test
public void testH5Fis_hdf5()
{
boolean isH5 = false;
try {
isH5 = H5.H5Fis_hdf5(H5_FILE);
}
catch (Throwable err) {
fail("H5.H5Fis_hdf5 failed on " + H5_FILE + ": " + err);
}
assertTrue(isH5 == true);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Fcreate_EXCL() throws Throwable
{
H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_EXCL, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Fopen_read_only() throws Throwable
{
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
H5.H5Fclose(fid);
}
catch (Exception ex) {
}
// set the file to read-only
File file = new File(H5_FILE);
if (file.setWritable(false)) {
// this should fail.
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
try {
H5.H5Fclose(fid);
}
catch (Exception ex) {
}
}
else {
fail("File.setWritable(true) failed.");
}
}
@Test(expected = HDF5LibraryException.class)
public void testH5Freopen_closed() throws Throwable
{
long fid = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
H5.H5Fclose(fid);
}
catch (Exception ex) {
}
// should fail because the file was closed.
fid2 = H5.H5Freopen(fid);
}
@Test
public void testH5Freopen()
{
long fid = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
fid2 = H5.H5Freopen(fid);
}
catch (Throwable err) {
fail("H5.H5Freopen: " + err);
}
assertTrue(fid2 > 0);
try {
H5.H5Fclose(fid2);
}
catch (Exception ex) {
}
try {
H5.H5Fclose(fid);
}
catch (Exception ex) {
}
}
@Test
public void testH5Fclose()
{
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
H5.H5Fclose(fid);
}
catch (Throwable err) {
fail("H5.H5Fclose: " + err);
}
}
@Test(expected = HDF5LibraryException.class)
public void testH5Fclose_twice() throws Throwable
{
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
H5.H5Fclose(fid);
}
catch (Throwable err) {
fail("H5.H5Fclose: " + err);
}
// it should fail since the file was closed.
H5.H5Fclose(fid);
}
@Test
public void testH5Fget_freespace()
{
long freeSpace = 0;
try {
freeSpace = H5.H5Fget_freespace(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_freespace: " + err);
}
assertEquals(freeSpace, 0);
}
// TODO add/and delete objects and test freespace
@Test
public void testH5Fget_filesize()
{
long fileSize = 0;
try {
fileSize = H5.H5Fget_filesize(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_freespace: " + err);
}
assertTrue(fileSize > 0);
}
// TODO add/and delete objects and test freespace
@Test
public void testH5Fget_mdc_hit_rate()
{
double rate;
try {
rate = H5.H5Fget_mdc_hit_rate(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_mdc_hit_rate: " + err);
}
}
@Test
public void testH5Fget_mdc_size()
{
int nentries = -1;
long cache_sizes[] = new long[3];
try {
nentries = H5.H5Fget_mdc_size(H5fid, cache_sizes);
}
catch (Throwable err) {
fail("H5.H5Fget_mdc_size: " + err);
}
assertTrue("H5.H5Fget_mdc_size #:" + nentries, nentries == 4);
}
// TODO: test more cases of different cache sizes.
@Test
public void testH5Freset_mdc_hit_rate_stats()
{
try {
H5.H5Freset_mdc_hit_rate_stats(H5fid);
}
catch (Throwable err) {
fail("H5.H5Freset_mdc_hit_rate_stats: " + err);
}
}
@Test
public void testH5Fget_name()
{
String fname = null;
try {
fname = H5.H5Fget_name(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_name: " + err);
}
assertNotNull(fname);
assertEquals(fname, H5_FILE);
}
@Test
public void testH5Fclear_elink_file_cache()
{
try {
H5.H5Fclear_elink_file_cache(H5fid);
}
catch (Throwable err) {
fail("H5.H5Freset_mdc_hit_rate_stats: " + err);
}
}
@Test
public void testH5F_dset_no_attrs_hint()
{
boolean ret_val_id = true;
try {
ret_val_id = H5.H5Fget_dset_no_attrs_hint(H5fid);
assertFalse("H5F_dset_no_attrs_hint", ret_val_id);
H5.H5Fset_dset_no_attrs_hint(H5fid, true);
ret_val_id = H5.H5Fget_dset_no_attrs_hint(H5fid);
assertTrue("H5F_dset_no_attrs_hint", ret_val_id);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5F_dset_no_attrs_hint: " + err);
}
}
}
|